Utopia Documents is a semantic, scientific, web-enabled PDF reader that is part of the Utopia toolset. Utopia Documents can be downloaded for free. Utopia provides links to web resources and metadata. Although Utopia is a PDF-reader, it bridges the web-connectivity gap with HTML content by making normally static PDFs fully web-enabled (as long as the user is online). Since June 2, 2014, Utopia Documents changed their license to become open source under GPLv3.

Versions

Utopia Documents v. 3.1 is available for Microsoft Windows (XP, Vista and Windows 7), Mac ( OS X 10.6 (Snow Leopard) and above) and Linux (beta).

Software Features

Utopia Documents can be used in the same way as any other PDF reader, such as Adobe Acrobat Reader or the Preview application on a Mac. The application's workspace is split into three main panes (which can be collapsed): the PDF file itself is displayed on the left, a 'pager' is displayed at the bottom, and a sidebar to the right. The pager allows you to scan back and forth through the document and to move rapidly from one page to another. Although you can use Utopia Documents to look at any PDF file, the software really comes into its own as a reader for scholarly papers in the biomedical and biochemical fields. * Free PDF reader available for Windows, Mac and Linux (beta) * Recognizes a document by creating a unique ‘fingerprint’ of its contents as it is rendered and associates it with any version of the article even if it is a manuscript version deposited into an institutional repository * Fingerprints are created on the basis of interalia or key typographical and

bibliometric Bibliometrics is the use of statistical methods to analyse books, articles and other publications, especially in regard with scientific contents. Bibliometric methods are frequently used in the field of library and information science. Biblio ...

characteristics (authors, figures, references etc.) A PDF is "transformed from a digital facsimile of its printed counterpart into a gateway to related knowledge, providing the research community with focused interactive access to analysis tools, external resources and the literature" * Direct link-outs from highlighted text to various data sources, scientific information, and search tools * Article impact metrics e.g.

altmetrics In scholarly and scientific publishing, altmetrics are non-traditional bibliometrics proposed as an alternative or complement to more traditional citation impact metrics, such as impact factor and ''h''-index. The term altmetrics was proposed i ...

are included when available to allow readers to view article data * Comments feature to allow researchers to make private comments or publicly discuss an article * Export of tables into spreadsheets and 'toggle' converting numerical tables into scatter plots * Optimized for life science-biomedical-biochemical scientific disciplines * Relies on external services; accessed via plug-ins whose appearance in the interface is mediated by a ‘semantic core’ for processing and analyzing data

Data Sources

The following data sources are accessed in Utopia Documents and activated automatically when there is relevant content to display:
Altmetric

* CrossRef *

Dryad (repository) Dryad is an international open-access repository of research data, especially data underlying scientific and medical publications (mainly of evolutionary, genetic, and ecology biology). Dryad is a curated general-purpose repository that makes data ...

GPCRD
See also

G protein-coupled receptor G protein-coupled receptors (GPCRs), also known as seven-(pass)-transmembrane domain receptors, 7TM receptors, heptahelical receptors, serpentine receptors, and G protein-linked receptors (GPLR), form a large group of evolutionarily-related p ...

Mendeley Mendeley is a reference manager software developed by Elsevier. It is used to manage and share research papers and generate bibliographies for scholarly articles. History The company Mendeley, named after the biologist Gregor Mendel and chemist D ...

* NucleaRDB *

PubMed PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics. The United States National Library of Medicine (NLM) at the National Institutes of Health maintain t ...

Reflect
*

Royal Society of Chemistry The Royal Society of Chemistry (RSC) is a learned society (professional association) in the United Kingdom with the goal of "advancing the chemical sciences". It was formed in 1980 from the amalgamation of the Chemical Society, the Royal Instit ...

SciBite
* The Semantic Biochemical Journal * SHERPA/RoMEO

References

{{reflist Engineering and Physical Sciences Research Council PDF readers Science and technology in Greater Manchester