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''Trichoderma'' is a
genus Genus ( plural genera ) is a taxonomic rank used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In the hierarchy of biological classification, genus com ...
of
fungi A fungus ( : fungi or funguses) is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and molds, as well as the more familiar mushrooms. These organisms are classified as a kingdom, separately from ...
in the family
Hypocreaceae The Hypocreaceae are a family (biology), family within the class Sordariomycetes. Species of Hypocreaceae are usually recognized by their brightly colored, perithecial Ascocarp, ascomata, typically yellow, orange or red. The family was proposed b ...
that is present in all soils, where they are the most prevalent culturable fungi. Many species in this genus can be characterized as opportunistic avirulent plant
symbiont Symbiosis (from Greek , , "living together", from , , "together", and , bíōsis, "living") is any type of a close and long-term biological interaction between two different biological organisms, be it mutualistic, commensalistic, or parasit ...
s. This refers to the ability of several ''Trichoderma ''species to form mutualistic
endophytic An endophyte is an endosymbiont, often a bacterium or fungus, that lives within a plant for at least part of its life cycle without causing apparent disease. Endophytes are ubiquitous and have been found in all species of plants studied to date; h ...
relationships with several plant species. The genomes of several ''Trichoderma'' species'' ''have been sequenced and are publicly available from the JGI.


Taxonomy

The genus was described by
Christiaan Hendrik Persoon Christiaan Hendrik Persoon (1 February 1761 – 16 November 1836) was a German mycologist who made additions to Linnaeus' mushroom taxonomy. Early life Persoon was born in South Africa at the Cape of Good Hope, the third child of an immig ...
in 1794, but the taxonomy has remained difficult to resolve. For a long time, it was considered to consist of only one species, ''
Trichoderma viride ''Trichoderma viride'' is a fungus and a biofungicide. It is used for seed- and soil treatment for suppression of various diseases caused by fungal pathogens. Biology ''T. viride'' is a mold which produces spores asexually, by mitosis. It ...
'', named for producing green
mold A mold () or mould () is one of the structures certain fungus, fungi can form. The dust-like, colored appearance of molds is due to the formation of Spore#Fungi, spores containing Secondary metabolite#Fungal secondary metabolites, fungal seco ...
.


Subdivision

In 1991, Bissett divided the genus into five
sections Section, Sectioning or Sectioned may refer to: Arts, entertainment and media * Section (music), a complete, but not independent, musical idea * Section (typography), a subdivision, especially of a chapter, in books and documents ** Section sig ...
, partly based on the aggregate species described by Rifai: *''Pachybasium'' (20 species) *''Longibrachiatum'' (10 species) *''Trichoderma'' *''Saturnisporum'' (2 species) *''Hypocreanum'' With the advent of molecular markers from 1995 onwards, Bissett's scheme was largely confirmed but ''Saturnisporum'' was merged with ''Longibrachiatum''. While ''Longibrachiatum'' and ''Hypocreanum'' appeared
monophyletic In cladistics for a group of organisms, monophyly is the condition of being a clade—that is, a group of taxa composed only of a common ancestor (or more precisely an ancestral population) and all of its lineal descendants. Monophyletic gro ...
, ''Pachybasium'' was determined to be
paraphyletic In taxonomy (general), taxonomy, a group is paraphyletic if it consists of the group's most recent common ancestor, last common ancestor and most of its descendants, excluding a few Monophyly, monophyletic subgroups. The group is said to be pa ...
, many of its species clustering with ''Trichoderma''. Druzhina and Kubicek (2005) confirmed the genus as
circumscribed In geometry, the circumscribed circle or circumcircle of a polygon is a circle that passes through all the vertices of the polygon. The center of this circle is called the circumcenter and its radius is called the circumradius. Not every polyg ...
was
holomorphic In mathematics, a holomorphic function is a complex-valued function of one or more complex variables that is complex differentiable in a neighbourhood of each point in a domain in complex coordinate space . The existence of a complex derivativ ...
. They identified 88 species which they demonstrated could be assigned to two major
clades A clade (), also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, t ...
. Consequently, the formal description of sections has been largely replaced by informal descriptions of clades, such as the Aureoviride clade or the Gelatinosum clade.


Species

The belief that ''Trichoderma'' was
monotypic In biology, a monotypic taxon is a taxonomic group (taxon) that contains only one immediately subordinate taxon. A monotypic species is one that does not include subspecies or smaller, infraspecific taxa. In the case of genera, the term "unispec ...
persisted until the 1969 work of Rifai, who recognised nine species. There are currently 89 accepted species in the genus ''Trichoderma''. ''
Hypocrea ''Hypocrea'' is a genus of fungi in the family Hypocreaceae. The widespread genus is estimated to contain 171 species that grow on rotten wood, and are often associated with other fungi. Anamorphic genera associated with ''Hypocrea'' include ''Ac ...
'' are
teleomorph In mycology, the terms teleomorph, anamorph, and holomorph apply to portions of the life cycles of fungi in the phyla Ascomycota and Basidiomycota: *Teleomorph: the sexual reproductive stage (morph), typically a fruiting body. *Anamorph: an ase ...
s of ''Trichoderma'', which themselves have ''Hypocrea'' as
anamorphs In mycology, the terms teleomorph, anamorph, and holomorph apply to portions of the life cycles of fungi in the phyla Ascomycota and Basidiomycota: *Teleomorph: the sexual reproductive stage (morph), typically a fruiting body. *Anamorph: an ase ...
.


Characteristics

Cultures are typically fast-growing at , but some species of ''Trichoderma'' will grow at . Colonies are transparent at first on media such as cornmeal dextrose agar (CMD) or white on richer media such as potato dextrose agar (PDA). Mycelium are not typically obvious on CMD,
conidia A conidium ( ; ), sometimes termed an asexual chlamydospore or chlamydoconidium (), is an asexual, non-motile spore of a fungus. The word ''conidium'' comes from the Ancient Greek word for dust, ('). They are also called mitospores due to the ...
typically form within one week in compact or loose tufts in shades of green or yellow or less frequently white. A yellow pigment may be secreted into the agar, especially on PDA. Some species produce a characteristic sweet or 'coconut' odor. Conidiophores are highly branched and thus difficult to define or measure, loosely or compactly tufted, often formed in distinct concentric rings or borne along the scant aerial hyphae. Main branches of the conidiophores produce lateral side branches that may be paired or not, the longest branches distant from the tip and often phialides arising directly from the main axis near the tip. The branches may rebranch, with the secondary branches often paired and longest secondary branches being closest to the main axis. All primary and secondary branches arise at or near 90° with respect to the main axis. The typical ''Trichoderma'' conidiophore with paired branches assumes a pyramidal aspect. Typically the conidiophore terminates in one or a few phialides. In some species (e.g., '' T. polysporum'') the main branches are terminated by long, simple or branched, hooked, straight or sinuous, septate, thin-walled, sterile or terminally fertile elongations. The main axis may be the same width as the base of the phialide or it may be much wider.
Phialide The phialide ( ; el, phialis, diminutive of phiale, a broad, flat vessel) is a flask-shaped projection from the vesicle (dilated part of the top of conidiophore) of certain fungi. It projects from the mycelium without increasing in length unless ...
s are typically enlarged in the middle but may be cylindrical or nearly
subglobose This glossary of botanical terms is a list of definitions of terms and concepts relevant to botany and plants in general. Terms of plant morphology are included here as well as at the more specific Glossary of plant morphology and Glossary o ...
. Phialides may be held in whorls, at an angle of 90° with respect to other members of the whorl, or they may be variously penicillate (
gliocladium ''Gliocladium''Corda (1840) ''Icon. fung. (Prague)'' 4: 30. is an asexual fungal genus in the Hypocreaceae. Certain other species including ''Gliocladium virens'' were recently transferred to the genus ''Trichoderma'' and ''G. roseum'' became '' ...
-like). Phialides may be densely clustered on a wide main axis (e.g., '' T. polysporum'', '' T. hamatum''), or they may be solitary (e.g., '' T. longibrachiatum'').
Conidia A conidium ( ; ), sometimes termed an asexual chlamydospore or chlamydoconidium (), is an asexual, non-motile spore of a fungus. The word ''conidium'' comes from the Ancient Greek word for dust, ('). They are also called mitospores due to the ...
typically appear dry, but in some species, they may be held in drops of clear green or yellow liquid (e.g., '' T. virens'', '' T. flavofuscum''). Conidia of most species are ellipsoidal, 3–5 x 2–4 
µm The micrometre ( international spelling as used by the International Bureau of Weights and Measures; SI symbol: μm) or micrometer (American spelling), also commonly known as a micron, is a unit of length in the International System of Unit ...
(L/W = > 1.3); globose conidia (L/W < 1.3) are rare. Conidia are typically smooth but tuberculate to finely warted conidia are known in a few species. Conidia appear colorless to green, smooth to rough, and are in moist conidial masses, variable in shape and size, small, 2.8– 4.8 mm for common species. Conidiophores branch repeatedly, bearing clusters of phialides terminally in most cases. Synanamorphs are formed by some species that also have typical ''Trichoderma'' pustules. Synanamorphs are recognized by their solitary
conidiophore A conidium ( ; ), sometimes termed an asexual chlamydospore or chlamydoconidium (), is an Asexual reproduction, asexual, non-motility, motile spore of a fungus. The word ''conidium'' comes from the Ancient Greek word for dust, ('). They are al ...
s that are verticillately branched and that bear conidia in a drop of clear green liquid at the tip of each phialide.
Chlamydospore A chlamydospore is the thick-walled large resting spore of several kinds of fungi, including Ascomycota such as '' Candida'', Basidiomycota such as ''Panus'', and various Mortierellales species. It is the life-stage which survives in unfavourable c ...
s may be produced by all species, but not all species produce chlamydospores on CMD at 20 °C within 10 days. Chlamydospores are typically unicellular subglobose and terminate short hyphae; they may also be formed within hyphal cells. Chlamydospores of some species are multicellular (e.g., '' T. stromaticum''). ''Trichoderma'' genomes appear to be in the 30–40 Mb range, with approximately 12,000 genes being identifiable.


Teleomorph

Teleomorph In mycology, the terms teleomorph, anamorph, and holomorph apply to portions of the life cycles of fungi in the phyla Ascomycota and Basidiomycota: *Teleomorph: the sexual reproductive stage (morph), typically a fruiting body. *Anamorph: an ase ...
s of ''Trichoderma'' are species of the ascomycete genus ''
Hypocrea ''Hypocrea'' is a genus of fungi in the family Hypocreaceae. The widespread genus is estimated to contain 171 species that grow on rotten wood, and are often associated with other fungi. Anamorphic genera associated with ''Hypocrea'' include ''Ac ...
''. These are characterized by the formation of fleshy, stromata in shades of light or dark brown, yellow or orange. Typically the stroma is discoidal to pulvinate and limited in extent but stromata of some species are effused, sometimes covering extensive areas. Stromata of some species (Podostroma) are clavate or turbinate. Perithecia are completely immersed. Ascospores are bicellular but disarticulate at the septum early in development into 16 part-ascospores so that the ascus appears to contain 16 ascospores. Ascospores are hyaline or green and typically spinulose. More than 200 species of ''Hypocrea'' have been described but few have been grown in pure culture and even fewer have been described in modern terms.


Occurrence

''Trichoderma'' species are frequently isolated from forest or agricultural soils at all
latitude In geography, latitude is a coordinate that specifies the north– south position of a point on the surface of the Earth or another celestial body. Latitude is given as an angle that ranges from –90° at the south pole to 90° at the north pol ...
s. ''Hypocrea'' species are most frequently found on bark or on decorticated wood but many species grow on bracket fungi (e.g. '' H. pulvinata''), Exidia ('' H. sulphurea'') or bird's nest fungi ('' H. latizonata'') or agarics ('' H. avellanea'').


Biocontrol agent

Several strains of ''Trichoderma'' have been developed as biocontrol agents against fungal diseases of plants. The various mechanisms include
antibiosis Antibiosis is a biological interaction between two or more organisms that is detrimental to at least one of them; it can also be an antagonistic association between an organism and the metabolic substances produced by another. Examples of antibiosi ...
,
parasitism Parasitism is a Symbiosis, close relationship between species, where one organism, the parasite, lives on or inside another organism, the Host (biology), host, causing it some harm, and is Adaptation, adapted structurally to this way of lif ...
, inducing host-plant resistance , and
competition Competition is a rivalry where two or more parties strive for a common goal which cannot be shared: where one's gain is the other's loss (an example of which is a zero-sum game). Competition can arise between entities such as organisms, indivi ...
. Most biocontrol agents are from the species '' T. asperellum'', '' T. harzianum'', '' T. viride'', and '' T. hamatum''. The biocontrol agent generally grows in its natural habitat on the root surface, and so affects root disease in particular, but can also be effective against foliar diseases.


Causal agent of disease

'' T. aggressivum'' (formerly ''T. harzianum'' biotype 4) is the causal agent of green mold, a disease of cultivated
button mushroom ''Agaricus bisporus'' is an edible basidiomycete mushroom native to grasslands in Eurasia and North America. It has two color states while immature – white and brown – both of which have various names, with additional names for the mature ...
s. ''
Trichoderma viride ''Trichoderma viride'' is a fungus and a biofungicide. It is used for seed- and soil treatment for suppression of various diseases caused by fungal pathogens. Biology ''T. viride'' is a mold which produces spores asexually, by mitosis. It ...
'' is the causal agent of green mold rot of onion. A strain of ''Trichoderma viride'' is a known cause of dieback of ''
Pinus nigra ''Pinus nigra'', the Austrian pine or black pine, is a moderately variable species of pine, occurring across Southern Europe from the Iberian Peninsula to the eastern Mediterranean, on the Anatolian peninsula of Turkey, Corsica and Cyprus, as wel ...
'' seedlings.


Toxic house mold

The common house mold, ''
Trichoderma longibrachiatum ''Trichoderma longibrachiatum'' is a fungus in the genus ''Trichoderma''. In addition to being a distinct species, ''T. longibrachiatum'' also typifies one of several clades within ''Trichoderma'' which comprises 21 different species. ''Trichoder ...
'', produces small toxic peptides containing amino acids not found in common proteins, like alpha-aminoisobutyric acid, called trilongins (up to 10% w/w). Their toxicity is due to absorption into human cells and production of nano-channels that obstruct vital
ion channels Ion channels are pore-forming membrane proteins that allow ions to pass through the channel pore. Their functions include establishing a resting membrane potential, shaping action potentials and other electrical signals by gating the flow of io ...
that ferry potassium and sodium ions across the
cell membrane The cell membrane (also known as the plasma membrane (PM) or cytoplasmic membrane, and historically referred to as the plasmalemma) is a biological membrane that separates and protects the interior of all cells from the outside environment ( ...
. This affects in the cells
action potential An action potential occurs when the membrane potential of a specific cell location rapidly rises and falls. This depolarization then causes adjacent locations to similarly depolarize. Action potentials occur in several types of animal cells, ...
profile, as seen in
cardiomyocytes Cardiac muscle (also called heart muscle, myocardium, cardiomyocytes and cardiac myocytes) is one of three types of vertebrate muscle tissues, with the other two being skeletal muscle and smooth muscle. It is an involuntary, striated muscle that ...
,
pneumocytes A pulmonary alveolus (plural: alveoli, from Latin ''alveolus'', "little cavity"), also known as an air sac or air space, is one of millions of hollow, distensible cup-shaped cavities in the lungs where oxygen is exchanged for carbon dioxide. Al ...
and
neurons A neuron, neurone, or nerve cell is an electrically excitable cell that communicates with other cells via specialized connections called synapses. The neuron is the main component of nervous tissue in all animals except sponges and placozoa. N ...
leading to conduction defects. Trilongins are highly resistant to heat and
antimicrobials An antimicrobial is an agent that kills microorganisms or stops their growth. Antimicrobial medicines can be grouped according to the microorganisms they act primarily against. For example, antibiotics are used against bacteria, and antifungals ar ...
making
primary prevention Preventive healthcare, or prophylaxis, consists of measures taken for the purposes of disease prevention.Hugh R. Leavell and E. Gurney Clark as "the science and art of preventing disease, prolonging life, and promoting physical and mental hea ...
the only management option.


Medical uses

Cyclosporine A Ciclosporin, also spelled cyclosporine and cyclosporin, is a calcineurin inhibitor, used as an immunosuppressant medication. It is a natural product. It is taken orally or intravenously for rheumatoid arthritis, psoriasis, Crohn's disease ...
(CsA), a
calcineurin Calcineurin (CaN) is a calcium and calmodulin dependent serine/threonine protein phosphatase (also known as protein phosphatase 3, and calcium-dependent serine-threonine phosphatase). It activates the T cells of the immune system and can be bloc ...
inhibitor produced by the fungi ''
Trichoderma polysporum ''Trichoderma'' is a genus of fungi in the family Hypocreaceae that is present in all soils, where they are the most prevalent culturable fungi. Many species in this genus can be characterized as opportunistic avirulent plant symbionts. This re ...
'', ''
Tolypocladium inflatum ''Tolypocladium inflatum'' is an ascomycete fungus originally isolated from a Norwegian soil sample that, under certain conditions, produces the immunosuppressant drug ciclosporin. In its sexual stage (teleomorph) it is a parasite on scarab beetl ...
'', and '' Cylindrocarpon lucidum'', is an immunosuppressant prescribed in organ transplants to prevent rejection.


Industrial use

''Trichoderma'', being a saprophyte adapted to thrive in diverse situations, produces a wide array of enzymes. By selecting strains that produce a particular kind of enzyme, and culturing these in suspension, industrial quantities of enzyme can be produced. * ''
Trichoderma reesei ''Trichoderma reesei'' is a mesophilic and filamentous fungus. It is an anamorph of the fungus ''Hypocrea jecorina''. ''T. reesei'' can secrete large amounts of cellulolytic enzymes (cellulases and hemicellulases). Microbial cellulases have ...
'' is used to produce
cellulase Cellulase (EC 3.2.1.4; systematic name 4-β-D-glucan 4-glucanohydrolase) is any of several enzymes produced chiefly by fungi, bacteria, and protozoans that catalyze cellulolysis, the decomposition of cellulose and of some related polysaccharide ...
and hemicellulase. * ''
Trichoderma longibrachiatum ''Trichoderma longibrachiatum'' is a fungus in the genus ''Trichoderma''. In addition to being a distinct species, ''T. longibrachiatum'' also typifies one of several clades within ''Trichoderma'' which comprises 21 different species. ''Trichoder ...
'' is used to produce
xylanase Endo-1,4-β-xylanase (EC 3.2.1.8, systematic name 4-β-D-xylan xylanohydrolase) is any of a class of enzymes that degrade the linear polysaccharide xylan into xylose, thus breaking down hemicellulose, one of the major components of plant cell w ...
. * ''
Trichoderma harzianum ''Trichoderma harzianum'' is a fungus that is also used as a fungicide. It is used for foliar application, seed treatment and soil treatment for suppression of fungal pathogens causing various fungal plant diseases. Commercial biotechnological p ...
'' is used to produce
chitinase Chitinases (EC 3.2.1.14, chitodextrinase, 1,4-β-poly-N-acetylglucosaminidase, poly-β-glucosaminidase, β-1,4-poly-N-acetyl glucosamidinase, poly ,4-(N-acetyl-β-D-glucosaminide)glycanohydrolase, (1→4)-2-acetamido-2-deoxy-β-D-glucan glycano ...
.


See also

* List of ''Trichoderma'' species * Bisvertinolone


References


Bibliography

*Rifai, M. A. 1969. A revision of the genus ''Trichoderma''. Mycol. Pap. 116:1-56. *


External links

* * *
International Subcommission on Trichoderma and Hypocrea Taxonomy site
{{Taxonbar, from=Q135322 Taxa named by Christiaan Hendrik Persoon Fungi described in 1801 Sordariomycetes genera