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''Streptomyces griseus'' is a
species In biology, a species is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest group of organisms in which any two individuals of the appropriate s ...
of
bacteria Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among ...
in the
genus Genus ( plural genera ) is a taxonomic rank used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In the hierarchy of biological classification, genus com ...
''
Streptomyces ''Streptomyces'' is the largest genus of Actinomycetota and the type genus of the family Streptomycetaceae. Over 500 species of ''Streptomyces'' bacteria have been described. As with the other Actinomycetota, streptomycetes are gram-positive, ...
'' commonly found in soil. A few strains have been also reported from deep-sea sediments. It is a
Gram-positive In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. Gram-positive bacte ...
bacterium with high
GC content In molecular biology and genetics, GC-content (or guanine-cytosine content) is the percentage of nitrogenous bases in a DNA or RNA molecule that are either guanine (G) or cytosine (C). This measure indicates the proportion of G and C bases out o ...
. Along with most other streptomycetes, ''S. griseus'' strains are well known producers of
antibiotics An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting bacterial infections, and antibiotic medications are widely used in the treatment and prevention o ...
and other such commercially significant
secondary metabolite Secondary metabolites, also called specialised metabolites, toxins, secondary products, or natural products, are organic compounds produced by any lifeform, e.g. bacteria, fungi, animals, or plants, which are not directly involved in the norm ...
s. These strains are known to be producers of 32 different structural types of
bioactive compound A bioactive compound is a compound that has an effect on a living organism, tissue or cell, usually demonstrated by basic research in vitro or in vivo in the laboratory. While dietary nutrients are essential to life, bioactive compounds have not ...
s.
Streptomycin Streptomycin is an antibiotic medication used to treat a number of bacterial infections, including tuberculosis, ''Mycobacterium avium'' complex, endocarditis, brucellosis, ''Burkholderia'' infection, plague, tularemia, and rat bite fever. Fo ...
, the first antibiotic ever reported from a bacterium, comes from strains of ''S. griseus''. Recently, the
whole genome sequence Whole genome sequencing (WGS), also known as full genome sequencing, complete genome sequencing, or entire genome sequencing, is the process of determining the entirety, or nearly the entirety, of the DNA sequence of an organism's genome at a ...
of one of its strains had been completed. The taxonomic history of ''S. griseus'' and its phylogenetically related strains has been turbulent. ''S. griseus'' was first described in 1914 by Krainsky, who called the species ''
Actinomyces ''Actinomyces'' is a genus of the Actinomycetia class of bacteria. They all are gram-positive. ''Actinomyces'' species are facultatively anaerobic and they grow best under anaerobic conditions. ''Actinomyces'' species may form endospores, an ...
griseus''. The name was changed in 1948 by Waksman and Henrici to ''Streptomyces griseus''. The interest in these strains stems from their ability to produce streptomycin, a compound which demonstrated significant bactericidal activity against organisms such as ''
Yersinia pestis ''Yersinia pestis'' (''Y. pestis''; formerly '' Pasteurella pestis'') is a gram-negative, non-motile, coccobacillus bacterium without spores that is related to both ''Yersinia pseudotuberculosis'' and ''Yersinia enterocolitica''. It is a facult ...
'' (the causative agent of plague) and ''
Mycobacterium tuberculosis ''Mycobacterium tuberculosis'' (M. tb) is a species of pathogenic bacteria in the family Mycobacteriaceae and the causative agent of tuberculosis. First discovered in 1882 by Robert Koch, ''M. tuberculosis'' has an unusual, waxy coating on its c ...
'' (the causative agent of tuberculosis). Streptomycin was discovered in the laboratory of
Selman Waksman Selman Abraham Waksman (July 22, 1888 – August 16, 1973) was a Jewish Russian-born American inventor, Nobel Prize laureate, biochemist and microbiologist whose research into the decomposition of organisms that live in soil enabled the discov ...
, although his PhD student Albert Schatz probably did most of the work on these strains of bacteria and the antibiotic they produce.


Taxonomy

''Streptomyces'' is the largest genus of the
Actinomycetota The ''Actinomycetota'' (or ''Actinobacteria'') are a phylum of all gram-positive bacteria. They can be terrestrial or aquatic. They are of great economic importance to humans because agriculture and forests depend on their contributions to soi ...
and is the type genus of the family Streptomycetaceae. These are Gram-positive bacteria with high GC content and are characterised by a complex
secondary metabolism Secondary metabolism (also called specialized metabolism) is a term for pathways and small molecule products of metabolism that are involved in ecological interactions, but are not absolutely required for the survival of the organism. These molecul ...
. They produce over two-thirds of the clinically useful
antibiotic An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting bacterial infections, and antibiotic medications are widely used in the treatment and prevention of ...
s of natural origin. Streptomycetes are found predominantly in
soil Soil, also commonly referred to as earth or dirt, is a mixture of organic matter, minerals, gases, liquids, and organisms that together support life. Some scientific definitions distinguish ''dirt'' from ''soil'' by restricting the former te ...
and in decaying vegetation, and most produce spores. Streptomycetes are noted for their distinct "earthy" odor which results from production of a volatile
metabolite In biochemistry, a metabolite is an intermediate or end product of metabolism. The term is usually used for small molecules. Metabolites have various functions, including fuel, structure, signaling, stimulatory and inhibitory effects on enzymes, c ...
,
geosmin Geosmin ( ) is an irregular sesquiterpenoid, produced from the universal sesquiterpene precursor farnesyl pyrophosphate (also known as farnesyl diphosphate), in a two-step -dependent reaction. Geosmin, along with the irregular monoterpene 2-met ...
. Like other streptomycetes, ''S. griseus'' has a high GC content in its genome, with an average of 72.2%. The species was first classified within the genus ''Streptomyces'' by Waksman and Henrici in 1948. The taxonomy of ''S. griseus'' and its evolutionarily related strains have been a considerable source of confusion for microbial systematists. 16S rRNA gene sequence data have been used to recognise the related strains, and are called ''S. griseus'' 16S rRNA gene clade. The strains of this clade have homogeneous
phenotypic In genetics, the phenotype () is the set of observable characteristics or traits of an organism. The term covers the organism's morphology or physical form and structure, its developmental processes, its biochemical and physiological proper ...
properties but show substantial genotypic heterogenecity based on
genomic Genomics is an interdisciplinary field of biology focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as well as its hierarchical, three-dim ...
data. Several attempts are still made to solve this issue using techniques such as DNA:DNA homology and
multilocus sequence typing Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci, using DNA sequences of internal fragments of multiple housekeeping genes to characterize isolates of microbial species. The first MLST scheme ...
. A whole genome sequence was carried out on the IFO 13350 strain of ''S. griseus''.


Physiology and morphology

''S. griseus'' and its related strains have recently been shown to be
alkaliphilic Alkaliphiles are a class of extremophilic microbes capable of survival in alkaline ( pH roughly 8.5–11) environments, growing optimally around a pH of 10. These bacteria can be further categorized as obligate alkaliphiles (those that require high ...
, i.e., they grow best at
alkaline In chemistry, an alkali (; from ar, القلوي, al-qaly, lit=ashes of the saltwort) is a base (chemistry), basic, ionic compound, ionic salt (chemistry), salt of an alkali metal or an alkaline earth metal. An alkali can also be defined as ...
pH values. Although these organisms grow in a wide pH range (from 5 to 11), they show a growth optimum at pH 9. They produce grey
spore In biology, a spore is a unit of sexual or asexual reproduction that may be adapted for dispersal and for survival, often for extended periods of time, in unfavourable conditions. Spores form part of the life cycles of many plants, algae, f ...
masses and grey-yellow reverse
pigments A pigment is a colored material that is completely or nearly insoluble in water. In contrast, dyes are typically soluble, at least at some stage in their use. Generally dyes are often organic compounds whereas pigments are often inorganic compou ...
when they grow as
colonies In modern parlance, a colony is a territory subject to a form of foreign rule. Though dominated by the foreign colonizers, colonies remain separate from the administration of the original country of the colonizers, the '' metropolitan state'' ...
. The spores have smooth surfaces and are arranged as straight chains.


Ecology

''S. griseus'' strains have been isolated from various ecologies, including stell waste tips,
rhizosphere The rhizosphere is the narrow region of soil or substrate that is directly influenced by root secretions and associated soil microorganisms known as the root microbiome. Soil pores in the rhizosphere can contain many bacteria and other microor ...
, deep sea sediments and coastal beach and dune sand systems. Recent studies have indicated the strains of ''S. griseus'' might be undergoing ecology-specific evolution, giving rise to genetic variation with the specific ecology, termed ecovars.


Antibiotic production

Interest in the genus ''Streptomyces'' for antibiotics came after the discovery of the antibiotic streptomycin in a ''S. griseus'' strain in 1943. The discovery of streptomycin, an anti
tuberculosis Tuberculosis (TB) is an infectious disease usually caused by '' Mycobacterium tuberculosis'' (MTB) bacteria. Tuberculosis generally affects the lungs, but it can also affect other parts of the body. Most infections show no symptoms, in ...
antibiotic, earned Selman Waksman the
Nobel Prize The Nobel Prizes ( ; sv, Nobelpriset ; no, Nobelprisen ) are five separate prizes that, according to Alfred Nobel's will of 1895, are awarded to "those who, during the preceding year, have conferred the greatest benefit to humankind." Alfr ...
in 1952. The award was not without controversy, since it excluded the nomination of Albert Schatz, who is now recognized as one of the major co-inventors of streptomycin. The strains of this species are now known to be rich sources of antibiotics and to produce 32 different structural types of commercially significant
secondary metabolites Secondary metabolites, also called specialised metabolites, toxins, secondary products, or natural products, are organic compounds produced by any lifeform, e.g. bacteria, fungi, animals, or plants, which are not directly involved in the nor ...
. Furthermore, the genomic studies have revealed a single strain of ''S. griseus'' IFO 13350 has the capacity to produce 34 different secondary metabolites.


Etymology

By 1943, Albert Schatz, a PhD student working in Selman Waksman’s laboratory, had isolated streptomycin from ''Streptomyces griseus'' (from the
Greek Greek may refer to: Greece Anything of, from, or related to Greece, a country in Southern Europe: *Greeks, an ethnic group. *Greek language, a branch of the Indo-European language family. **Proto-Greek language, the assumed last common ancestor ...
''strepto''- ("twisted") + ''mykēs'' fungus"and the
Latin Latin (, or , ) is a classical language belonging to the Italic branch of the Indo-European languages. Latin was originally a dialect spoken in the lower Tiber area (then known as Latium) around present-day Rome, but through the power of the ...
''griseus'', “gray”).


The official New Jersey state microbe

''S. griseus'' was designated the official New Jersey
state microbe A state microbe is a microorganism used as an official state symbol. Several U.S. states have honored microorganisms by nominating them to become official state symbols. The first state to declare an Official State Microbe is Oregon which chose ' ...
in legislation submitted by Senator Sam Thompson (R-12) in May 2017 and Assemblywoman Annette Quijano (D-20) in June 2017. The organism was chosen because it is a New Jersey native that made unique contributions to healthcare and scientific research worldwide. A strain of ''S. griseus'' that produced the antibiotic streptomycin was discovered in New Jersey in “heavily manured field soil” from the New Jersey Agricultural Experimental Station by Albert Schatz in 1943. Streptomycin is noteworthy because it is the first significant antibiotic discovered after penicillin, the first systemic antibiotic discovered in America, the first antibiotic active against tuberculosis, and the first-line treatment for plague. Moreover, New Jersey was the home of Selman Waksman, who was awarded the Nobel Prize in Physiology or Medicine for his systematic studies of antibiotic production by ''S. griseus'' and other soil microbes. The bill, S1729, was signed into law by NJ Governor Phil Murphy May 2019.


See also

*
CRT (genetics) CRT is the gene cluster responsible for the biosynthesis of carotenoids. Those genes are found in eubacteria,Carotenoid biosynthetic pathway: molecular phylogenies and evolutionary behavior of crt genes in eubacteria. Phadwal K, Gene, 17 January 2 ...
,
gene cluster A gene family is a set of homologous genes within one organism. A gene cluster is a group of two or more genes found within an organism's DNA that encode similar polypeptides, or proteins, which collectively share a generalized function and are ...
responsible for the
biosynthesis Biosynthesis is a multi-step, enzyme-catalyzed process where substrates are converted into more complex products in living organisms. In biosynthesis, simple compounds are modified, converted into other compounds, or joined to form macromolecules. ...
of
carotenoid Carotenoids (), also called tetraterpenoids, are yellow, orange, and red organic compound, organic pigments that are produced by plants and algae, as well as several bacteria, and Fungus, fungi. Carotenoids give the characteristic color to pumpki ...
s


References


External links


Type strain of ''Streptomyces griseus'' at Bac''Dive'' - the Bacterial Diversity Metadatabase
{{Taxonbar, from=Q7623385 griseus