Streptomyces Antibioticus
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''Streptomyces antibioticus'' (previously known as ''Actinomyces antibioticus'') is a
gram-positive In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. Gram-positive bacte ...
bacterium Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among ...
discovered in 1941 by Nobel-prize-winner
Selman Waksman Selman Abraham Waksman (July 22, 1888 – August 16, 1973) was a Jewish Russian-born American inventor, Nobel Prize laureate, biochemist and microbiologist whose research into the decomposition of organisms that live in soil enabled the discov ...
and
H. Boyd Woodruff Harold Boyd Woodruff (July 22, 1917 – January 19, 2017) was an American soil microbiologist and a member of the National Academy of Sciences. He is known for the discovery of actinomycin, and the development of the industrial production by fe ...
. Its name is derived from the Greek ''"strepto-"'' meaning "twisted", alluding to this
genus Genus ( plural genera ) is a taxonomic rank used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In the hierarchy of biological classification, genus com ...
' chain-like
spore In biology, a spore is a unit of sexual or asexual reproduction that may be adapted for dispersal and for survival, often for extended periods of time, in unfavourable conditions. Spores form part of the life cycles of many plants, algae, f ...
production, and "''antibioticus''", referring to this species' extensive
antibiotic An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting bacterial infections, and antibiotic medications are widely used in the treatment and prevention of ...
production. Upon its first characterization, it was noted that ''S. antibioticus'' produces a distinct soil odor.


Discovery

''Streptomyces antibioticus'' was discovered by Selman Waksman and H. Boyd Woodruff, who named the bacterium ''Actinomyces antibioticus.'' In their 1941 publication, Waksman and Woodruff describe their use of the "bacterial-agar plate method", in which they mixed a suspension of ''
E. coli ''Escherichia coli'' (),Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. also known as ''E. coli'' (), is a Gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus ''Escher ...
'' with washed
agar Agar ( or ), or agar-agar, is a jelly-like substance consisting of polysaccharides obtained from the cell walls of some species of red algae, primarily from ogonori (''Gracilaria'') and "tengusa" (''Gelidiaceae''). As found in nature, agar is ...
containing 1.5%
NaCl Sodium chloride , commonly known as salt (although sea salt also contains other chemical salts), is an ionic compound with the chemical formula NaCl, representing a 1:1 ratio of sodium and chloride ions. With molar masses of 22.99 and 35.45 g ...
and 0.5% K3PO4. To this blend, they added "fresh field or garden soil" that was diluted with sterile tap water, and plated their final mixture. They concluded that "bacterial antagonists", that is,
antibiotic An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting bacterial infections, and antibiotic medications are widely used in the treatment and prevention of ...
producing organisms, would produce clear patches in the agar. Through this method they isolated and characterized ''Actinomyces antibioticus''. Two years later, Waksman renamed the organism ''Streptomyces antibioticus.''


Characteristics


Phylogeny

''Streptomyces'' ''antibioticus'' belongs to the family Streptomycetacae, which contains two other genera: ''
Micromonospora ''Micromonospora'' is a genus of bacteria of the family Micromonosporaceae. They are gram-positive, spore-forming, generally aerobic, and form a branched mycelium; they occur as saprotrophic forms in soil and water. Various species are sources o ...
'' and ''
Kitasatospora ''Kitasatospora'' is an Actinobacteria genus in the family Streptomycetaceae. The genus name comes from Shibasaburo Kitasato, a Japanese bacteriologist. Species ''Kitasatospora'' comprises the following genera: * '' K. aburaviensis'' (Nish ...
''.
16S rRNA 16S rRNA may refer to: * 16S ribosomal RNA 16 S ribosomal RNA (or 16 S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome ( SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure. The g ...
gene-based
phylogeny A phylogenetic tree (also phylogeny or evolutionary tree Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, MA.) is a branching diagram or a tree showing the evolutionary relationships among various biological spec ...
shows that within the ''
Streptomyces ''Streptomyces'' is the largest genus of Actinomycetota and the type genus of the family Streptomycetaceae. Over 500 species of ''Streptomyces'' bacteria have been described. As with the other Actinomycetota, streptomycetes are gram-positive, ...
'' clade, the species ''S. antibioticus'' is more closely related to '' Streptomyces griseorubor'' than to any other ''Streptomyces'' species''.'' One study showed that these two species form a late-diverging
clade A clade (), also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, ...
within the phylogenetic tree of the genus ''Streptomyces.''


Genomics

The
NCBI The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The ...
's
GenBank The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a part ...
contains thousands of DNA sequences for ''S. antibioticus'' genes, partial genome sequences, and three complete genome sequences. The currently available ''S. antibioticus'' genomes range in size from 8 to 10 million basepairs. As with other members of the
Actinomycetes The Actinomycetales is an order of Actinomycetota. A member of the order is often called an actinomycete. Actinomycetales are generally gram-positive and anaerobic and have mycelia in a filamentous and branching growth pattern. Some actinomycete ...
, the ''S. antibioticus'' genome is known to have a high GC content (>55%).


Physiology and ecology

''Streptomyces'' species produce differentiated, branch-like structures known as
hypha A hypha (; ) is a long, branching, filamentous structure of a fungus, oomycete, or actinobacterium. In most fungi, hyphae are the main mode of vegetative growth, and are collectively called a mycelium. Structure A hypha consists of one or ...
e, which collectively make up the organism's
mycelium Mycelium (plural mycelia) is a root-like structure of a fungus consisting of a mass of branching, thread-like hyphae. Fungal colonies composed of mycelium are found in and on soil and many other substrate (biology), substrates. A typical single ...
(plural mycelia). For ''Streptomyces antibioticus'', as with other ''Streptomyces'' species, mycelia can be divided into two types: aerial and substrate. The substrate mycelium is formed for vegetative growth, whereas the aerial mycelium is formed for the purpose of spore production. Aerial hyphae branch out from the substrate mycelium and subsequently differentiate into chains of spores. ''Streptomyces antibioticus'' is known to be an
aerobic Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics, a form of aerobic exercise * Aerobic respiration, the aerobic process of cellu ...
microorganism that resides in soil communities. ''S. antibioticus'' has been demonstrated to grow in temperatures ranging from 28-37 °C. As an Actinomycete, this microbe is inferred to behave as a
mesophile A mesophile is an organism that grows best in moderate temperature, neither too hot nor too cold, with an optimum growth range from . The optimum growth temperature for these organisms is 37°C. The term is mainly applied to microorganisms. Organi ...
in laboratory settings, having an optimum growth temperature between 25-30 °C. As a member of the genus ''Streptomyces'', ''S. antibioticus'' is inferred to live off of organic matter in the soil, and possess the ability to degrade large polymers such as
chitin Chitin ( C8 H13 O5 N)n ( ) is a long-chain polymer of ''N''-acetylglucosamine, an amide derivative of glucose. Chitin is probably the second most abundant polysaccharide in nature (behind only cellulose); an estimated 1 billion tons of chit ...
and
keratin Keratin () is one of a family of structural fibrous proteins also known as ''scleroproteins''. Alpha-keratin (α-keratin) is a type of keratin found in vertebrates. It is the key structural material making up scales, hair, nails, feathers, ho ...
. ''S. antibioticus'' has been shown to grow on several types of media, including
gelatin Gelatin or gelatine (from la, gelatus meaning "stiff" or "frozen") is a translucent, colorless, flavorless food ingredient, commonly derived from collagen taken from animal body parts. It is brittle when dry and rubbery when moist. It may also ...
,
Litmus milk Litmus milk is a milk-based medium used to distinguish between different species of bacteria. The lactose (milk sugar), litmus (pH indicator), and casein (milk protein) contained within the medium can all be metabolized by different types of bacter ...
, Czapek's agar, and Peptone media.


Medical relevance

A unique trait of ''Streptomyces antibioticus'' is its ability to produce several antibiotics of different classes. Upon its discovery, it was found that ''S. antibioticus'' produced a then novel substance named
Actinomycin Dactinomycin, also known as actinomycin D, is a chemotherapy medication used to treat a number of types of cancer. This includes Wilms tumor, rhabdomyosarcoma, Ewing's sarcoma, trophoblastic neoplasm, testicular cancer, and certain types of ovari ...
. This substance was then separated into two compounds: Actinomycin A and Actinomycin B. Actinomycin A was found to be highly
bacteriostatic A bacteriostatic agent or bacteriostat, abbreviated Bstatic, is a biological or chemical agent that stops bacteria from reproducing, while not necessarily killing them otherwise. Depending on their application, bacteriostatic antibiotics, disinfect ...
(bacteria hindering) against all bacteria it was tested with. Actinomycin B displayed little bacteriostatic activity but was shown to be highly
bactericidal A bactericide or bacteriocide, sometimes abbreviated Bcidal, is a substance which kills bacteria. Bactericides are disinfectants, antiseptics, or antibiotics. However, material surfaces can also have bactericidal properties based solely on their ...
(bacteria killing), particularly towards gram-positive bacteria. Actinomycin is also known to display
antifungal An antifungal medication, also known as an antimycotic medication, is a pharmaceutical fungicide or fungistatic used to treat and prevent mycosis such as athlete's foot, ringworm, candidiasis (thrush), serious systemic infections such as crypto ...
properties. The antibiotic
Boromycin Boromycin is a bacteriocidal polyether-macrolide antibiotic. It was initially isolated from the '' Streptomyces antibioticus'', and is notable for being the first natural product found to contain the element boron. It is effective against most G ...
is also produced by ''S. antibioticus''. This compound was first isolated from a ''S. antibioticus'' strain found in an African soil sample. Boromycin is active against gram-positive bacteria, but inactive against
gram-negative Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall ...
bacteria. Boromycin has also been shown to have antifungal and
antiprotozoal Antiprotozoal agents ( ATC code: ATC P01) is a class of pharmaceuticals used in treatment of protozoan infection. A paraphyletic group, protozoans have little in common with each other. For example, ''Entamoeba histolytica'', a unikont eukaryotic ...
properties. Certain ''Streptomyces antibioticus'' strains produce antibiotics that have yet to be named and thoroughly characterized, such as the one mentioned in a 1998 study from
Calcutta University The University of Calcutta (informally known as Calcutta University; CU) is a public collegiate state university in India, located in Kolkata, West Bengal, India. Considered one of best state research university all over India every year, C ...
. The antibiotic described was found to show antimicrobial activity against gram-negative bacteria, gram-positive bacteria, and pathogenic fungi. In addition to producing antibiotics, one strain of ''S. antibioticus'' has been discovered to induce a different species of ''Streptomyces'' to produce antibiotics. Research done by Li et al. from
Osaka University , abbreviated as , is a public research university located in Osaka Prefecture, Japan. It is one of Japan's former Imperial Universities and a Designated National University listed as a "Top Type" university in the Top Global University Project. ...
studied a strain of ''S. antibioticus'' that produced a molecule with the ability to induce the organism '' Streptomyces virginiae'' to produce the antibiotic
Virginiamycin Virginiamycin is a streptogramin antibiotic similar to pristinamycin and quinupristin/dalfopristin. It is a combination of pristinamycin IIA (virginiamycin M1) and virginiamycin S1. Virginiamycin is used in the fuel ethanol Ethanol (a ...
. Presently,
bacterial diseases Pathogenic bacteria are bacteria that can cause disease. This article focuses on the bacteria that are pathogenic to humans. Most species of bacteria are harmless and are often Probiotic, beneficial but others can cause infectious diseases. The n ...
persist as a substantial cause of death worldwide. To further exacerbate this issue, the discovery
antibiotic-resistant Antimicrobial resistance (AMR) occurs when microbes evolve mechanisms that protect them from the effects of antimicrobials. All classes of microbes can evolve resistance. Fungi evolve antifungal resistance. Viruses evolve antiviral resistance. ...
strains of bacteria is steadily increasing, a problem that raises the demand for novel antibiotics. Currently, over two thirds of the antibiotics clinically prescribed have been produced by species within the genus ''Streptomyces''. With the recent availability of whole genome sequences, ''Streptomyces'' species known for producing antibiotics are being studied for potential new antibiotics that may be present in their genomes, but not yet characterized.


References

{{Taxonbar, from=Q22286909 antibioticus Bacteria described in 1943