Sim4 is a
nucleotide sequence alignment
In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Alig ...
program akin to
BLAST but specifically tailored to
DNA to
cDNA
In genetics, complementary DNA (cDNA) is DNA synthesized from a single-stranded RNA (e.g., messenger RNA (mRNA) or microRNA (miRNA)) template in a reaction catalyzed by the enzyme reverse transcriptase. cDNA is often used to express a speci ...
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EST (Expressed Sequence Tag) alignment (as opposed to DNA–DNA or protein–protein alignment). It was written by Florea et al.
External links
A Computer Program for Aligning a cDNA Sequence with a Genomic DNA SequenceDownload
Phylogenetics software
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