San Joaquin Church may refer to:
;Philippines
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San Joaquin Church (Iloilo)
The San Joaquin Parish Church (Spanish: ''Iglesia Parroquial de San Joaquin''), commonly known as San Joaquin Church, is a Roman Catholic Church in the municipality of San Joaquin, Iloilo, Philippines within the jurisdiction of the Roman Catholic A ...
;United States
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San Joaquin Church (Ensenada, New Mexico), listed on the National Register of Historic Places
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