Peptidase 1 (mite)
   HOME

TheInfoList



OR:

Peptidase 1 (mite) (), also known as endopeptidase 1 (mite), is an
enzyme Enzymes () are proteins that act as biological catalysts by accelerating chemical reactions. The molecules upon which enzymes may act are called substrates, and the enzyme converts the substrates into different molecules known as products ...
found in various
species In biology, a species is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest group of organisms in which any two individuals of the appropriat ...
of
mite Mites are small arachnids (eight-legged arthropods). Mites span two large orders of arachnids, the Acariformes and the Parasitiformes, which were historically grouped together in the subclass Acari, but genetic analysis does not show clear e ...
s. This enzyme exhibits
cysteine protease Cysteine proteases, also known as thiol proteases, are hydrolase enzymes that degrade proteins. These proteases share a common catalytic mechanism that involves a nucleophilic cysteine thiol in a catalytic triad or dyad. Discovered by Gopal ...
activity with broad
endopeptidase Endopeptidase or endoproteinase are proteolytic peptidases that break peptide bonds of nonterminal amino acids (i.e. within the molecule), in contrast to exopeptidases, which break peptide bonds from end-pieces of terminal amino acids. For this ...
specificity. The various forms of peptidase 1 pertaining to individual mite species comprise the group 1 mite
allergen An allergen is a type of antigen that produces an abnormally vigorous immune response in which the immune system fights off a perceived threat that would otherwise be harmless to the body. Such reactions are called allergies. In technical t ...
s. Following the naming conventions of allergens, these peptidase 1 variants include Der p 1 of the European
house dust mite House dust mites (HDM, or simply dust mites) are various species of acariform mites belonging to the family Pyroglyphidae that are found in association with dust in dwellings. They are known for causing allergies. Biology Species The curren ...
''Dermatophagoides pteronyssinus''; Der f 1 of the American house dust mite ''Dermatophagoides farinae''; Eur m 1 of the Mayne's house dust mite ''Euroglyphus maynei''; and Pso o 1 of the sheep scab mite ''
Psoroptes ovis ''Psoroptes'' is a genus of mites, including the agents that cause psoroptic mange. Psoroptic mange ''Psoroptes'' mites are responsible for causing psoroptic mange in various animals, leading to economic losses among farmers of cattle, sheep ...
''. The group 1 mite allergens, especially Der p 1 and Der f 1, are major sources of house dust mite (HDM)
allergies Allergies, also known as allergic diseases, refer a number of conditions caused by the hypersensitivity of the immune system to typically harmless substances in the environment. These diseases include hay fever, food allergies, atopic dermat ...
in
temperate climate In geography, the temperate climates of Earth occur in the middle latitudes (23.5° to 66.5° N/S of Equator), which span between the tropics and the polar regions of Earth. These zones generally have wider temperature ranges throughout ...
s.


History

The first allergen to be purified and characterized was Der p 1, in a 1980 study by Martin D. Chapman and Thomas Platts-Mills. By the end of the decade, it was suspected that Der p 1 was a cysteine protease when its structure showed similarities to that of
actinidin Actinidain (, ''actinidin'', ''Actinidia anionic protease'', ''proteinase A2 of Actinidia chinensis'') is a type of cysteine protease enzyme found in fruits including kiwifruit (genus ''Actinidia''), pineapple, mango, banana, figs, and papaya. Th ...
and
papain Papain, also known as papaya proteinase I, is a cysteine protease () enzyme present in papaya (''Carica papaya'') and mountain papaya (''Vasconcellea cundinamarcensis''). It is the namesake member of the papain-like protease family. It has wide ...
. In the mid-1990s, Hewitt ''et al.'', Shakib ''et al.'', and King ''et al.'' proposed methods of Der p 1 promoting
allergic response An allergic response is a hypersensitive immune reaction to a substance that normally is harmless or would not cause an immune response in everyone. An allergic response may cause harmful symptoms such as itching or inflammation or tissue inju ...
s through its
protease A protease (also called a peptidase, proteinase, or proteolytic enzyme) is an enzyme that catalyzes (increases reaction rate or "speeds up") proteolysis, breaking down proteins into smaller polypeptides or single amino acids, and spurring the ...
activities. In 2002, Pso o 1 was identified and characterized by Lee ''et al.'', who determined its
amino acid Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although hundreds of amino acids exist in nature, by far the most important are the alpha-amino acids, which comprise proteins. Only 22 alpha ...
sequence In mathematics, a sequence is an enumerated collection of objects in which repetitions are allowed and order matters. Like a set, it contains members (also called ''elements'', or ''terms''). The number of elements (possibly infinite) is called ...
and found it to be homologous to the other group 1 mite allergens. In 2009, Der f 1 was the first observed instance of a natural allergen in the form of a
monomer In chemistry, a monomer ( ; '' mono-'', "one" + '' -mer'', "part") is a molecule that can react together with other monomer molecules to form a larger polymer chain or three-dimensional network in a process called polymerization. Classification ...
.


Structure

Peptidase 1 is a cysteine protease belonging to the C1
protein family A protein family is a group of evolutionarily related proteins. In many cases, a protein family has a corresponding gene family, in which each gene encodes a corresponding protein with a 1:1 relationship. The term "protein family" should not be ...
, with a structure similar to that of papain. Initially, peptidase 1 is synthesized as an inactive
zymogen In biochemistry, a zymogen (), also called a proenzyme (), is an inactive precursor of an enzyme. A zymogen requires a biochemical change (such as a hydrolysis reaction revealing the active site, or changing the configuration to reveal the activ ...
, which is activated by enzymatic cleavage. Structurally, peptidase 1 enzymes are nearly identical; for example, a two-domain structure and an approximate 81%
sequence identity In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Ali ...
are retained between Der p 1 and Der f 1. Due to the conserved structures, a single allergen may be used as a model in the development of drugs intended to target group 1 mite allergens, with Der p 1 usually considered the archetype. Specificity and
cross-reactivity Cross-reactivity, in a general sense, is the reactivity of an observed agent which initiates reactions outside the main reaction expected. This has implications for any kind of test or assay, including diagnostic tests in medicine, and can be a c ...
between multiple group 1 allergens is thought to stem from the differences and homologies in structure, particularly regarding the positions of
epitope An epitope, also known as antigenic determinant, is the part of an antigen that is recognized by the immune system, specifically by antibodies, B cells, or T cells. The epitope is the specific piece of the antigen to which an antibody binds. The p ...
s.


Der p 1

Der p 1 is a 25
kDa The dalton or unified atomic mass unit (symbols: Da or u) is a non-SI unit of mass widely used in physics and chemistry. It is defined as of the mass of an unbound neutral atom of carbon-12 in its nuclear and electronic ground state and at re ...
glycoprotein Glycoproteins are proteins which contain oligosaccharide chains covalently attached to amino acid side-chains. The carbohydrate is attached to the protein in a cotranslational or posttranslational modification. This process is known as glyco ...
composed of a 222-amino acid sequence encoded by the
gene In biology, the word gene (from , ; "...Wilhelm Johannsen coined the word gene to describe the Mendelian units of heredity..." meaning ''generation'' or ''birth'' or ''gender'') can have several different meanings. The Mendelian gene is a b ...
DERP1. Der p 1 is synthesized as an inactive 80-amino acid
protein precursor A protein precursor, also called a pro-protein or pro-peptide, is an inactive protein (or peptide) that can be turned into an active form by post-translational modification, such as breaking off a piece of the molecule or adding on another molecule ...
known as p 1, which is then cleaved and activated by mature Der p 1. Due to its cysteine protease structure, Der p 1 may be irreversibly inhibited by E-64 or
iodoacetamide 2-Iodoacetamide is an alkylating agent used for peptide mapping purposes. Its actions are similar to those of iodoacetate. It is commonly used to bind covalently with the thiol group of cysteine so the protein cannot form disulfide bonds. Also use ...
, which bind to the
cysteine Cysteine (symbol Cys or C; ) is a semiessential proteinogenic amino acid with the formula . The thiol side chain in cysteine often participates in enzymatic reactions as a nucleophile. When present as a deprotonated catalytic residue, some ...
active site In biology and biochemistry, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction. The active site consists of amino acid residues that form temporary bonds with the substrate ( binding site) ...
and block substrate access. The major
kiwifruit Kiwifruit (often shortened to kiwi in North American, British and continental European English) or Chinese gooseberry is the edible berry of several species of woody vines in the genus ''Actinidia''. The most common cultivar group of kiwif ...
cysteine proteinase inhibitor KCPI1 has also been shown to be able to inhibit Der p 1.


Der f 1

Der f 1 is a 25 kDa protease composed of a 223-amino acid sequence. In its inactive precursor state, f 1 has an 80-amino acid prodomain. Unlike Der p 1, Der f 1 lacks
binding site In biochemistry and molecular biology, a binding site is a region on a macromolecule such as a protein that binds to another molecule with specificity. The binding partner of the macromolecule is often referred to as a ligand. Ligands may includ ...
s for metals such as
magnesium Magnesium is a chemical element with the symbol Mg and atomic number 12. It is a shiny gray metal having a low density, low melting point and high chemical reactivity. Like the other alkaline earth metals (group 2 of the periodic ...
and
calcium Calcium is a chemical element with the symbol Ca and atomic number 20. As an alkaline earth metal, calcium is a reactive metal that forms a dark oxide-nitride layer when exposed to air. Its physical and chemical properties are most similar ...
. Through secretion by ''
Pichia pastoris ''Pichia pastoris'' is a species of methylotrophic yeast. It was found in the 1960s, with its feature of using methanol as a source of carbon and energy. After years of study, ''P. pastoris'' was widely used in biochemical research and biotech ...
'', Der f 1 is easier to produce in a recombinant form than Der p 1 due to the removal of an N-glycosylation site. In solution or
crystal A crystal or crystalline solid is a solid material whose constituents (such as atoms, molecules, or ions) are arranged in a highly ordered microscopic structure, forming a crystal lattice that extends in all directions. In addition, macro ...
, Der f 1 is a monomer. Der f 1 has been shown to express polymorphism, with at least two
haplotype A haplotype ( haploid genotype) is a group of alleles in an organism that are inherited together from a single parent. Many organisms contain genetic material ( DNA) which is inherited from two parents. Normally these organisms have their DNA o ...
s observed in different regions. Der f 1 can be inhibited by
chestnut The chestnuts are the deciduous trees and shrubs in the genus ''Castanea'', in the beech family Fagaceae. They are native to temperate regions of the Northern Hemisphere. The name also refers to the edible nuts they produce. The unrel ...
cystatin The cystatins are a family of cysteine protease inhibitors which share a sequence homology and a common tertiary structure of an alpha helix lying on top of an anti-parallel beta sheet. The family is subdivided as described below. Cystatins sho ...
, which is thought to stem from the presence of the amino acid Gln152 (instead of Der p 1's Arg151) near the enzyme's active site.


Eur m 1

Eur m 1 is composed of a 223-amino acid sequence. In its inactive precursor state, Eur m 1 has an 80-amino acid prodomain. Eur m 1 shares 88% identity with Der f 1, which has led to the proposal that ''Euroglyphus maynei'' may be more closely related to ''Dermatophagoides farinae'' than ''Dermatophagoides pteronyssinus''.


Pso o 1

Pso o 1 is a 36 kDa protease composed of a 223-amino acid sequence. Pso o 1's precursor form is thought to be composed of an 81-amino acid sequence. Compared to other forms of peptidase 1, Pso o 1 shares 54% identity with Der f 1, 53% identity with Der p 1, and 53% identity with Eur m 1. A number of amino acid sequences from other peptidase 1 enzymes are shown to be conserved in Pso o 1, including enzymatic amino acids, a N-glycosylation site, and the Der p 1 epitope Leu147-Gln160.


Biological function

Peptidase 1 enzymes are found in the
fecal pellets Feces ( or faeces), known colloquially and in slang as poo and poop, are the solid or semi-solid remains of food that was not digested in the small intestine, and has been broken down by bacteria in the large intestine. Feces contain a relati ...
of mites. Some of these enzymes have also been located in the mite gut, suggesting that these enzymes play a role in
digestion Digestion is the breakdown of large insoluble food molecules into small water-soluble food molecules so that they can be absorbed into the watery blood plasma. In certain organisms, these smaller substances are absorbed through the small intest ...
. As a cysteine protease, peptidase 1 functions by cleaving other mite proteases in a
biochemical cascade A biochemical cascade, also known as a signaling cascade or signaling pathway, is a series of chemical reactions that occur within a biological cell when initiated by a stimulus. This stimulus, known as a first messenger, acts on a receptor that ...
that results in the activation of other allergens. Mite fecal pellets carrying peptidase 1 enter the
respiratory tract The respiratory tract is the subdivision of the respiratory system involved with the process of respiration in mammals. The respiratory tract is lined with respiratory epithelium as respiratory mucosa. Air is breathed in through the nose to ...
through inhalation. There, as group 1 mite allergens, peptidase 1 enzymes promote allergic
sensitization Sensitization is a non-associative learning process in which repeated administration of a stimulus results in the progressive amplification of a response. Sensitization often is characterized by an enhancement of response to a whole class of sti ...
, usually either by causing
epithelial Epithelium or epithelial tissue is one of the four basic types of animal tissue, along with connective tissue, muscle tissue and nervous tissue. It is a thin, continuous, protective layer of compactly packed cells with a little intercellu ...
leakage in the respiratory tract through cleavage of the cells'
tight junction Tight junctions, also known as occluding junctions or ''zonulae occludentes'' (singular, ''zonula occludens''), are multiprotein junctional complexes whose canonical function is to prevent leakage of solutes and water and seals between the epith ...
s or by triggering innate
chemokine Chemokines (), or chemotactic cytokines, are a family of small cytokines or signaling proteins secreted by cells that induce directional movement of leukocytes, as well as other cell types, including endothelial and epithelial cells. In additi ...
release through activation of
signal transduction Signal transduction is the process by which a chemical or physical signal is transmitted through a cell as a series of molecular events, most commonly protein phosphorylation catalyzed by protein kinases, which ultimately results in a cellula ...
pathways.


Der p 1

Der p 1 is located in the mid-gut and fecal pellets of the European house dust mite ''Dermatophagoides pteronyssinus''. It has been suggested that the mite's gastrointestinal cells produce Der p 1. In the mite, Der p 1 is responsible for the activation of zymogens located in the mite digestive tract, including itself and the
serine protease Serine proteases (or serine endopeptidases) are enzymes that cleave peptide bonds in proteins. Serine serves as the nucleophilic amino acid at the (enzyme's) active site. They are found ubiquitously in both eukaryotes and prokaryotes. Seri ...
s Der p 3, Der p 6, and Der p 9, which are then secreted as potent allergens and thereby increase the pathogenesis of the allergy. Der p 1 is a major source of HDM allergies, triggering
immunoglobulin E Immunoglobulin E (IgE) is a type of antibody (or immunoglobulin (Ig) " isotype") that has been found only in mammals. IgE is synthesised by plasma cells. Monomers of IgE consist of two heavy chains (ε chain) and two light chains, with the Π...
binding levels of 80-90% and, combined with the group 2 allergen Der p 2, accounting for over 50% of all HDM-related IgE binding.
CD23 CD23, also known as Fc epsilon RII, or FcεRII, is the "low-affinity" receptor for IgE, an antibody isotype involved in allergy and resistance to parasites, and is important in regulation of IgE levels. Unlike many of the antibody receptors, CD23 ...
and
CD25 Interleukin-2 receptor alpha chain (also called CD25) is the human protein encoded by the ''IL2RA'' gene. The interleukin 2 (IL2) receptor alpha (IL2RA) and beta ( IL2RB) chains, together with the common gamma chain (IL2RG), constitute the high-a ...
are targets of Der p 1, which cleaves these receptors from the surfaces of active
B cell B cells, also known as B lymphocytes, are a type of white blood cell of the lymphocyte subtype. They function in the humoral immunity component of the adaptive immune system. B cells produce antibody molecules which may be either secreted o ...
s and
T cell A T cell is a type of lymphocyte. T cells are one of the important white blood cells of the immune system and play a central role in the adaptive immune response. T cells can be distinguished from other lymphocytes by the presence of a T-cell r ...
s, respectively, and thereby triggers the release of more IgE. Because of the prevalence of Der p 1 in mite allergies, developers of HDM allergy vaccines consider it necessary to factor in Der p 1. As a result, Der p 1 is a major component of mite allergen crude extracts and is frequently used as the basis of numerous hypoallergenic derivatives created in the refinement of specific immunotherapy. Even by inhibiting only Der p 1, allergic responses may be noticeably alleviated.


Der f 1

Der f 1 is found in the fecal pellets of the American house dust mite ''Dermatophagoides farinae''. Der f 1 is considered a major mite allergen and has been shown to promote allergic reactions in the
lung The lungs are the primary organs of the respiratory system in humans and most other animals, including some snails and a small number of fish. In mammals and most other vertebrates, two lungs are located near the backbone on either side of ...
s and
skin Skin is the layer of usually soft, flexible outer tissue covering the body of a vertebrate animal, with three main functions: protection, regulation, and sensation. Other animal coverings, such as the arthropod exoskeleton, have different ...
. Der f 1 shows over 80% cross-reactivity with Der p 1. Like Der p 1, Der f 1 functions by cleaving CD23 to trigger an IgE response. Der f 1 also triggers an immune response through
eosinophil Eosinophils, sometimes called eosinophiles or, less commonly, acidophils, are a variety of white blood cells (WBCs) and one of the immune system components responsible for combating multicellular parasites and certain infections in vertebrates. A ...
degranulation Degranulation is a cellular process that releases antimicrobial cytotoxic or other molecules from secretory vesicles called granules found inside some cells. It is used by several different cells involved in the immune system, including gra ...
.


Eur m 1

Eur m 1 is secreted by the Mayne's house dust mite ''Euroglyphus maynei''. Eur m 1 provokes allergic responses from T cells. Der p 1 and Der f 1 show only low levels of cross-reactivity with Eur m 1.


Pso o 1

Pso o 1 is found in the gut and fecal pellets of the sheep scab mite ''Psoroptes ovis''. Psoroptic mange in
sheep Sheep or domestic sheep (''Ovis aries'') are domesticated, ruminant mammals typically kept as livestock. Although the term ''sheep'' can apply to other species in the genus '' Ovis'', in everyday usage it almost always refers to domesticate ...
is promoted by the cysteine protease activity of Pso o 1, which targets
connective tissue Connective tissue is one of the four primary types of animal tissue, along with epithelial tissue, muscle tissue, and nervous tissue. It develops from the mesenchyme derived from the mesoderm the middle embryonic germ layer. Connective tiss ...
s and the molecules of the
extracellular matrix In biology, the extracellular matrix (ECM), also called intercellular matrix, is a three-dimensional network consisting of extracellular macromolecules and minerals, such as collagen, enzymes, glycoproteins and hydroxyapatite that provide s ...
. Although ''Psoroptes'' belongs to a different
order Order, ORDER or Orders may refer to: * Categorization, the process in which ideas and objects are recognized, differentiated, and understood * Heterarchy, a system of organization wherein the elements have the potential to be ranked a number of ...
from the house dust mite species, Pso o 1 is classified as a group 1 mite allergen alongside Der p 1, Der f 1, and Eur m 1.


References


External links

* * {{Portal bar, Biology, border=no EC 3.4.22