Proteins are large
biomolecule
A biomolecule or biological molecule is a loosely used term for molecules present in organisms that are essential to one or more typically biological processes, such as cell division, morphogenesis, or development. Biomolecules include large ...
s and
macromolecule
A macromolecule is a very large molecule important to biophysical processes, such as a protein or nucleic acid. It is composed of thousands of covalently bonded atoms. Many macromolecules are polymers of smaller molecules called monomers. The ...
s that comprise one or more long chains of
amino acid residues
Residue may refer to:
Chemistry and biology
* An amino acid, within a peptide chain
* Crop residue, materials left after agricultural processes
* Pesticide residue, refers to the pesticides that may remain on or in food after they are appli ...
. Proteins perform a vast array of functions within organisms, including
catalysing metabolic reactions,
DNA replication,
responding to stimuli, providing
structure to cells and
organisms, and
transporting molecules from one location to another. Proteins differ from one another primarily in their sequence of amino acids, which is dictated by the
nucleotide sequence of their
genes, and which usually results in
protein folding into a specific
3D structure that determines its activity.
A linear chain of amino acid residues is called a
polypeptide
Peptides (, ) are short chains of amino acids linked by peptide bonds. Long chains of amino acids are called proteins. Chains of fewer than twenty amino acids are called oligopeptides, and include dipeptides, tripeptides, and tetrapeptides.
A p ...
. A protein contains at least one long polypeptide. Short polypeptides, containing less than 20–30 residues, are rarely considered to be proteins and are commonly called
peptides. The individual amino acid residues are bonded together by
peptide bond
In organic chemistry, a peptide bond is an amide type of covalent chemical bond linking two consecutive alpha-amino acids from C1 (carbon number one) of one alpha-amino acid and N2 (nitrogen number two) of another, along a peptide or protein cha ...
s and adjacent amino acid residues. The
sequence of amino acid residues in a protein is defined by the
sequence of a gene, which is encoded in the
genetic code. In general, the genetic code specifies 20 standard amino acids; but in certain organisms the genetic code can include
selenocysteine
Selenocysteine (symbol Sec or U, in older publications also as Se-Cys) is the 21st proteinogenic amino acid. Selenoproteins contain selenocysteine residues. Selenocysteine is an analogue of the more common cysteine with selenium in place of the s ...
and—in certain
archaea
Archaea ( ; singular archaeon ) is a domain of single-celled organisms. These microorganisms lack cell nuclei and are therefore prokaryotes. Archaea were initially classified as bacteria, receiving the name archaebacteria (in the Archaebac ...
—
pyrrolysine
Pyrrolysine (symbol Pyl or O; encoded by the 'amber' stop codon UAG) is an α-amino acid that is used in the biosynthesis of proteins in some methanogenic archaea and bacteria; it is not present in humans. It contains an α-amino group (which is ...
. Shortly after or even during synthesis, the residues in a protein are often chemically modified by
post-translational modification, which alters the physical and chemical properties, folding, stability, activity, and ultimately, the function of the proteins. Some proteins have non-peptide groups attached, which can be called
prosthetic groups or
cofactors
Cofactor may also refer to:
* Cofactor (biochemistry), a substance that needs to be present in addition to an enzyme for a certain reaction to be catalysed
* A domain parameter in elliptic curve cryptography, defined as the ratio between the order ...
. Proteins can also work together to achieve a particular function, and they often associate to form stable
protein complexes.
Once formed, proteins only exist for a certain period and are then
degraded and recycled by the cell's machinery through the process of
protein turnover
In cell biology, protein turnover refers to the replacement of older proteins as they are broken down within the cell. Different types of proteins have very different turnover rates.
A balance between protein synthesis and protein degradation is ...
. A protein's lifespan is measured in terms of its
half-life and covers a wide range. They can exist for minutes or years with an average lifespan of 1–2 days in mammalian cells. Abnormal or misfolded proteins are degraded more rapidly either due to being targeted for destruction or due to being unstable.
Like other biological macromolecules such as
polysaccharide
Polysaccharides (), or polycarbohydrates, are the most abundant carbohydrates found in food. They are long chain polymeric carbohydrates composed of monosaccharide units bound together by glycosidic linkages. This carbohydrate can react with wa ...
s and
nucleic acid
Nucleic acids are biopolymers, macromolecules, essential to all known forms of life. They are composed of nucleotides, which are the monomers made of three components: a 5-carbon sugar, a phosphate group and a nitrogenous base. The two main cl ...
s, proteins are essential parts of organisms and participate in virtually every process within
cells
Cell most often refers to:
* Cell (biology), the functional basic unit of life
Cell may also refer to:
Locations
* Monastic cell, a small room, hut, or cave in which a religious recluse lives, alternatively the small precursor of a monastery w ...
. Many proteins are
enzymes that
catalyse biochemical reactions and are vital to
metabolism. Proteins also have structural or mechanical functions, such as
actin and
myosin
Myosins () are a superfamily of motor proteins best known for their roles in muscle contraction and in a wide range of other motility processes in eukaryotes. They are ATP-dependent and responsible for actin-based motility.
The first myosin ...
in muscle and the proteins in the
cytoskeleton, which form a system of
scaffolding that maintains cell shape. Other proteins are important in cell signaling,
immune responses,
cell adhesion
Cell adhesion is the process by which cells interact and attach to neighbouring cells through specialised molecules of the cell surface. This process can occur either through direct contact between cell surfaces such as cell junctions or indir ...
, and the
cell cycle. In animals, proteins are needed in the
diet to provide the
essential amino acids that cannot be
synthesized.
Digestion breaks the proteins down for metabolic use.
Proteins may be
purified from other cellular components using a variety of techniques such as
ultracentrifugation,
precipitation,
electrophoresis
Electrophoresis, from Ancient Greek ἤλεκτρον (ḗlektron, "amber") and φόρησις (phórēsis, "the act of bearing"), is the motion of dispersed particles relative to a fluid under the influence of a spatially uniform electric fie ...
, and
chromatography; the advent of
genetic engineering
Genetic engineering, also called genetic modification or genetic manipulation, is the modification and manipulation of an organism's genes using technology. It is a set of technologies used to change the genetic makeup of cells, including t ...
has made possible a number of methods to facilitate purification. Methods commonly used to study protein structure and function include
immunohistochemistry
Immunohistochemistry (IHC) is the most common application of immunostaining. It involves the process of selectively identifying antigens (proteins) in cells of a tissue section by exploiting the principle of antibodies binding specifically to an ...
,
site-directed mutagenesis,
X-ray crystallography,
nuclear magnetic resonance and
mass spectrometry
Mass spectrometry (MS) is an analytical technique that is used to measure the mass-to-charge ratio of ions. The results are presented as a ''mass spectrum'', a plot of intensity as a function of the mass-to-charge ratio. Mass spectrometry is use ...
.
History and etymology
Proteins were recognized as a distinct class of biological molecules in the eighteenth century by
Antoine Fourcroy
Antoine is a French given name (from the Latin '' Antonius'' meaning 'highly praise-worthy') that is a variant of Danton, Titouan, D'Anton and Antonin.
The name is used in France, Switzerland, Belgium, Canada, West Greenland, Haiti, French Gui ...
and others, distinguished by the molecules' ability to
coagulate or
flocculate under treatments with heat or acid. Noted examples at the time included
albumin from
egg white
Egg white is the clear liquid (also called the albumen or the glair/glaire) contained within an egg. In chickens it is formed from the layers of secretions of the anterior section of the hen's oviduct during the passage of the egg. It forms arou ...
s, blood
serum albumin,
fibrin
Fibrin (also called Factor Ia) is a fibrous, non-globular protein involved in the clotting of blood. It is formed by the action of the protease thrombin on fibrinogen, which causes it to polymerize. The polymerized fibrin, together with platele ...
, and wheat
gluten.
Proteins were first described by the Dutch chemist
Gerardus Johannes Mulder and named by the Swedish chemist
Jöns Jacob Berzelius
Baron Jöns Jacob Berzelius (; by himself and his contemporaries named only Jacob Berzelius, 20 August 1779 – 7 August 1848) was a Swedish chemist. Berzelius is considered, along with Robert Boyle, John Dalton, and Antoine Lavoisier, to be on ...
in 1838.
Mulder carried out
elemental analysis of common proteins and found that nearly all proteins had the same
empirical formula, C
400H
620N
100O
120P
1S
1.
[ He came to the erroneous conclusion that they might be composed of a single type of (very large) molecule. The term "protein" to describe these molecules was proposed by Mulder's associate Berzelius; protein is derived from the Greek word (), meaning "primary", "in the lead", or "standing in front",][ + '' -in''. Mulder went on to identify the products of protein degradation such as the amino acid leucine for which he found a (nearly correct) molecular weight of 131 Da.][ Prior to "protein", other names were used, like "albumins" or "albuminous materials" (''Eiweisskörper'', in German).
Early nutritional scientists such as the German Carl von Voit believed that protein was the most important nutrient for maintaining the structure of]