Phosphate (Pho) Regulon
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The Phosphate (Pho)
regulon In molecular genetics, a regulon is a group of genes that are regulated as a unit, generally controlled by the same regulatory gene that expresses a protein acting as a repressor or activator. This terminology is generally, although not exclusiv ...
is a regulatory mechanism used for the conservation and management of inorganic
phosphate In chemistry, a phosphate is an anion, salt, functional group or ester derived from a phosphoric acid. It most commonly means orthophosphate, a derivative of orthophosphoric acid . The phosphate or orthophosphate ion is derived from phospho ...
within the
cell Cell most often refers to: * Cell (biology), the functional basic unit of life Cell may also refer to: Locations * Monastic cell, a small room, hut, or cave in which a religious recluse lives, alternatively the small precursor of a monastery w ...
. It was first discovered in ''
Escherichia coli ''Escherichia coli'' (),Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. also known as ''E. coli'' (), is a Gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus ''Escher ...
'' as an operating system for the bacterial strain, and was later identified in other species. The Pho system is composed of various components including extracellular
enzymes Enzymes () are proteins that act as biological catalysts by accelerating chemical reactions. The molecules upon which enzymes may act are called substrate (chemistry), substrates, and the enzyme converts the substrates into different molecule ...
and transporters that are capable of phosphate assimilation in addition to extracting inorganic phosphate from organic sources. This is an essential process since phosphate plays an important role in cellular membranes,
genetic expression Gene expression is the process by which information from a gene is used in the synthesis of a functional gene product that enables it to produce end products, protein or non-coding RNA, and ultimately affect a phenotype, as the final effect. The ...
, and
metabolism Metabolism (, from el, μεταβολή ''metabolē'', "change") is the set of life-sustaining chemical reactions in organisms. The three main functions of metabolism are: the conversion of the energy in food to energy available to run cell ...
within the cell. Under low nutrient availability, the Pho regulon helps the cell survive and thrive despite a depletion of phosphate within the environment. When this occurs, phosphate starvation-inducible (''psi'') genes activate other proteins that aid in the transport of inorganic phosphate.


Function

The Pho regulon is controlled by a
two-component regulatory system In the field of molecular biology, a two-component regulatory system serves as a basic stimulus-response coupling mechanism to allow organisms to sense and respond to changes in many different environmental conditions. Two-component systems t ...
composed of a
histidine kinase Histidine kinases (HK) are multifunctional, and in non-animal kingdoms, typically transmembrane, proteins of the transferase class of enzymes that play a role in signal transduction across the cellular membrane. The vast majority of HKs are homod ...
sensor protein (PhoR) within the inner membrane and a transcriptional
response regulator A response regulator is a protein that mediates a cell's response to changes in its environment as part of a two-component regulatory system. Response regulators are coupled to specific histidine kinases which serve as sensors of environmental cha ...
(PhoB/PhoR) on the cytoplasmic side of the membrane. These proteins bind to upstream promoters in the pho regulon in order to induce a general change in
gene transcription Transcription is the process of copying a segment of DNA into RNA. The segments of DNA transcribed into RNA molecules that can encode proteins are said to produce messenger RNA (mRNA). Other segments of DNA are copied into RNA molecules calle ...
. This occurs when the cell senses low concentrations of phosphate within its internal environment causing the response regulator to be phosphorylated inducing an overall decrease in gene transcription. This mechanism is ubiquitous within
gram The gram (originally gramme; SI unit symbol g) is a Physical unit, unit of mass in the International System of Units (SI) equal to one one thousandth of a kilogram. Originally defined as of 1795 as "the absolute weight of a volume of pure wate ...
-positive, gram-negative,
cyanobacteria Cyanobacteria (), also known as Cyanophyta, are a phylum of gram-negative bacteria that obtain energy via photosynthesis. The name ''cyanobacteria'' refers to their color (), which similarly forms the basis of cyanobacteria's common name, blu ...
,
yeasts Yeasts are eukaryotic, single-celled microorganisms classified as members of the fungus kingdom. The first yeast originated hundreds of millions of years ago, and at least 1,500 species are currently recognized. They are estimated to constitut ...
, and
archaea Archaea ( ; singular archaeon ) is a domain of single-celled organisms. These microorganisms lack cell nuclei and are therefore prokaryotes. Archaea were initially classified as bacteria, receiving the name archaebacteria (in the Archaebac ...
.


Signal transduction pathway

Depletion of inorganic phosphate within the cell is required for activation of the Pho regulon in most
prokaryotes A prokaryote () is a single-celled organism that lacks a nucleus and other membrane-bound organelles. The word ''prokaryote'' comes from the Greek πρό (, 'before') and κάρυον (, 'nut' or 'kernel').Campbell, N. "Biology:Concepts & Connec ...
. In the most commonly studied bacterium, ''E. coli,'' seven total proteins are used to detect intracellular levels of inorganic phosphate along with transfusing that signal appropriately. Of the seven proteins, one is a metal binding protein (PhoU) and four are phosphate-specific transporters (Pst S, Pst C, Pst A, and Pst B). The transcriptional response regulator PhoR activates PhoB when it senses low intracellular inorganic phosphate levels.


Alternative phosphate usage

Although inorganic phosphate is primarily used in the Pho regulon system, there are several species of bacteria that can utilize varying forms of phosphate. One example is seen in ''E. coli'' which can use both inorganic and organic phosphate, as well as naturally occurring or synthetic phosphates (Phn). Several enzymes breakdown the compounds of the alternative phosphates, allowing the organism to use the phosphate via the C-P lyase pathway. Other species of bacteria like ''
Pseudomonas aeruginosa ''Pseudomonas aeruginosa'' is a common encapsulated, gram-negative, aerobic–facultatively anaerobic, rod-shaped bacterium that can cause disease in plants and animals, including humans. A species of considerable medical importance, ''P. aerugi ...
'' and ''
Salmonella typhimurium ''Salmonella enterica'' subsp. ''enterica'' is a subspecies of ''Salmonella enterica'', the rod-shaped, flagellated, aerobic, Gram-negative bacterium. Many of the pathogenic serovars of the ''S. enterica'' species are in this subspecies, includi ...
'' use a different pathway called the phosphonatase pathway, whereas the bacterium ''
Enterobacter aerogenes ''Klebsiella aerogenes'', previously known as ''Enterobacter aerogenes,'' is a Gram-negative, oxidase negative, catalase positive, citrate positive, indole negative, rod-shaped bacterium. The bacterium is approximately 1-3 microns in length, and ...
'' can use either one of the pathways to cleave the C-P bond found in the alternative phosphates.


Conservation among bacterial species

Although the Pho regulon system is most widely studied in ''Escherichia coli'' it is found in other bacterial species such as ''
Pseudomonas fluorescens ''Pseudomonas fluorescens'' is a common Gram-negative, rod-shaped bacterium. It belongs to the ''Pseudomonas'' genus; 16S rRNA analysis as well as phylogenomic analysis has placed ''P. fluorescens'' in the ''P. fluorescens'' group within the genu ...
'' and ''
Bacillus subtilis ''Bacillus subtilis'', known also as the hay bacillus or grass bacillus, is a Gram-positive, catalase-positive bacterium, found in soil and the gastrointestinal tract of ruminants, humans and marine sponges. As a member of the genus ''Bacillu ...
.'' In ''Pseudomonas fluorescens'', the transcriptional response regulator (PhoB/PhoR) retain the same function they play in ''E. coli''. ''Bacillus subtilis'' also shares some similarities when encountering low intracellular phosphate concentrations. Under phosphate-starved conditions ''B. subtilis'' binds its transcription regulator, PhoP and the histidine kinase, PhoR to the Pho-regulon gene which induces a production of teichuronic acid. Furthermore, recent studies have suggested the critical role that techoic acid plays in the cell wall of ''B. subtilis,'' by acting as a phosphate reservoir and storing the necessary amount of inorganic phosphate in phosphate-starved conditions.


The Pho regulon's effect on pathogenesis

Because bacteria use the Pho regulon to maintain homeostasis of Pi, it has the added effect of being used to control other genes. Many of the other genes activated or repressed by the Pho regulon cause virulence in bacterial pathogens. Three ways that this regulon effects virulence and pathogenicity are toxin production, biofilm formation, and acid tolerance.


Toxin production

''Pseudomonas aeruginosa'' is a known opportunistic pathogen. One of its virulence factors is its ability to produce
pyocyanin Pyocyanin (PCN−) is one of the many toxic compounds produced and secreted by the Gram negative bacterium ''Pseudomonas aeruginosa''. Pyocyanin is a blue secondary metabolite, turning red below pH 4.9, with the ability to oxidise and reduce other ...
, a toxin released to kill both microbes and mammalian cells alike. The pyocyanin production occurs when activated by PhoB. This implies that ''P. aeruginosa'' uses the low Pi as a signal that the host has been damaged and to start producing toxin to improve chances of its survival. In contrast to ''P. aeruginosa'', ''
Vibrio cholerae ''Vibrio cholerae'' is a species of Gram-negative, facultative anaerobe and comma-shaped bacteria. The bacteria naturally live in brackish or saltwater where they attach themselves easily to the chitin-containing shells of crabs, shrimps, and oth ...
'' has its toxin genes repressed by PhoB. It is thought that PhoB in ''V. cholerae'' is activated when Pi is low to prevent the production of toxins. It could be activated by other signals in the environment, but it has been shown that PhoB directly inhibits the toxins production by binding to the ''tcpPH'' promoter and stopping the ToxR regulon from being activated. Evidence supporting Pi as the signal is given by how the regulon is not repressed under high Pi conditions. The regulatory cascade is only repressed under low Pi conditions.


Biofilm formation

Biofilm A biofilm comprises any syntrophic consortium of microorganisms in which cells stick to each other and often also to a surface. These adherent cells become embedded within a slimy extracellular matrix that is composed of extracellular ...
s are a mixture of microorganisms, layered together and usually adhered to a surface. The advantages of a biofilm include resistance to environmental stresses, antibiotics, and the ability to more easily obtain nutrients. PhoB is used to enhance biofilm formation in environments where Pi is not in sufficient supply. This has been shown in multiple microbes including ''Pseudomonas, V. cholera,'' and ''E. coli.'' This is not always the effect of the Pho regulon as for other species in different environments it is more advantageous to not be in biofilm when Pi is low. In these cases PhoB represses biofilm formation.


Acid tolerance

''E. coli'' has a protein to protect other periplasmic proteins from low pH environments called the Asr protein. The gene responsible for this protein is PhoB-dependent, and can only be turned on when the Pho regulon is activated by low Pi concentration. Synthesis of the Asr protein imparts acid shock resistance to ''E. coli'' enabling it to survive in environments like the stomach which has a low pH. Many acid tolerance genes are induced by more than just the low pH environment and require other environmental signals to be present in order to be activated. These specific nutrients being present or in low concentrations,
anaerobiosis An anaerobic organism or anaerobe is any organism that does not require molecular oxygen for growth. It may react negatively or even die if free oxygen is present. In contrast, an aerobic organism (aerobe) is an organism that requires an oxygenate ...
, and host-produced factors.


References

{{reflist, 30em Molecular biology Bacterial genetics