Multi-particle Collision Dynamics
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Multi-particle collision dynamics (MPC), also known as stochastic rotation dynamics (SRD), is a particle-based mesoscale simulation technique for complex fluids which fully incorporates thermal fluctuations and hydrodynamic interactions. Coupling of embedded particles to the coarse-grained solvent is achieved through
molecular dynamics Molecular dynamics (MD) is a computer simulation method for analyzing the physical movements of atoms and molecules. The atoms and molecules are allowed to interact for a fixed period of time, giving a view of the dynamic "evolution" of the ...
.


Method of simulation

The solvent is modelled as a set of N point particles of mass m with continuous coordinates \vec_ and velocities \vec_. The simulation consists of streaming and collision steps. During the streaming step, the coordinates of the particles are updated according to \vec_(t+\delta t_) = \vec_(t) + \vec_(t) \delta t_ where \delta t_ is a chosen simulation time step which is typically much larger than a molecular dynamics time step. After the streaming step, interactions between the solvent particles are modelled in the collision step. The particles are sorted into collision cells with a lateral size a. Particle velocities within each cell are updated according to the collision rule :\vec_ \rightarrow \vec_ + \hat ( \vec_ - \vec_ ) where \vec_ is the centre of mass velocity of the particles in the collision cell and \hat is a
rotation matrix In linear algebra, a rotation matrix is a transformation matrix that is used to perform a rotation in Euclidean space. For example, using the convention below, the matrix :R = \begin \cos \theta & -\sin \theta \\ \sin \theta & \cos \theta \end ...
. In two dimensions, \hat performs a rotation by an angle +\alpha or -\alpha with probability 1/2. In three dimensions, the rotation is performed by an angle \alpha around a random rotation axis. The same rotation is applied for all particles within a given collision cell, but the direction (axis) of rotation is statistically independent both between all cells and for a given cell in time. If the structure of the collision grid defined by the positions of the collision cells is fixed,
Galilean invariance Galilean invariance or Galilean relativity states that the laws of motion are the same in all inertial frames of reference. Galileo Galilei first described this principle in 1632 in his ''Dialogue Concerning the Two Chief World Systems'' using th ...
is violated. It is restored with the introduction of a random shift of the collision grid. Explicit expressions for the
diffusion coefficient Diffusivity, mass diffusivity or diffusion coefficient is a proportionality constant between the molar flux due to molecular diffusion and the gradient in the concentration of the species (or the driving force for diffusion). Diffusivity is enco ...
and
viscosity The viscosity of a fluid is a measure of its resistance to deformation at a given rate. For liquids, it corresponds to the informal concept of "thickness": for example, syrup has a higher viscosity than water. Viscosity quantifies the inte ...
derived based on Green-Kubo relations are in excellent agreement with simulations.


Simulation parameters

The set of parameters for the simulation of the solvent are: * solvent particle mass m * average number of solvent particles per collision box n_ * lateral collision box size a * stochastic rotation angle \alpha *
kT (energy) {, class="wikitable" style="float: right;" ! Approximate values of ''kT'' at 298 K ! Units , - , ''kT'' = , , J , - , ''kT'' = , , pN⋅nm , - , ''kT'' = , , cal , - , ''kT'' = , , meV , - , ''kT'' = {{val, kT=-174 , , dBm/H ...
* time step \delta t_ The simulation parameters define the solvent properties, such as *
mean free path In physics, mean free path is the average distance over which a moving particle (such as an atom, a molecule, or a photon) travels before substantially changing its direction or energy (or, in a specific context, other properties), typically as a ...
\lambda = \delta t_ \sqrt *
diffusion coefficient Diffusivity, mass diffusivity or diffusion coefficient is a proportionality constant between the molar flux due to molecular diffusion and the gradient in the concentration of the species (or the driving force for diffusion). Diffusivity is enco ...
D = \frac \Bigg \frac -1 \Bigg/math> *
shear viscosity The viscosity of a fluid is a measure of its resistance to deformation at a given rate. For liquids, it corresponds to the informal concept of "thickness": for example, syrup has a higher viscosity than water. Viscosity quantifies the inter ...
\nu *
thermal diffusivity In heat transfer analysis, thermal diffusivity is the thermal conductivity divided by density and specific heat capacity at constant pressure. It measures the rate of transfer of heat of a material from the hot end to the cold end. It has the SI ...
D_ where d is the dimensionality of the system. A typical choice for normalisation is a=1,\; kT=1,\;m=1. To reproduce fluid-like behaviour, the remaining parameters may be fixed as \alpha = 130^,\; n_ = 10,\; \delta t_ \in .01;0.1/math>.J. Elgeti "Sperm and Cilia Dynamics" PhD thesis, Universität zu Köln (2006)
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Applications

MPC has become a notable tool in the simulations of many soft-matter systems, including *
colloid A colloid is a mixture in which one substance consisting of microscopically dispersed insoluble particles is suspended throughout another substance. Some definitions specify that the particles must be dispersed in a liquid, while others extend ...
dynamics *
polymer A polymer (; Greek '' poly-'', "many" + ''-mer'', "part") is a substance or material consisting of very large molecules called macromolecules, composed of many repeating subunits. Due to their broad spectrum of properties, both synthetic a ...
dynamics *
vesicles Vesicle may refer to: ; In cellular biology or chemistry * Vesicle (biology and chemistry), a supramolecular assembly of lipid molecules, like a cell membrane * Synaptic vesicle ; In human embryology * Vesicle (embryology), bulge-like features o ...
* active systems *
liquid crystal Liquid crystal (LC) is a state of matter whose properties are between those of conventional liquids and those of solid crystals. For example, a liquid crystal may flow like a liquid, but its molecules may be oriented in a crystal-like way. T ...
s


References

{{reflist Computational fluid dynamics