''Methylorubrum extorquens'' is a
Gram-negative bacterium
Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall ...
. ''
Methylorubrum
''Methylorubrum'' is a genus of bacteria from the family ''Methylobacteriaceae
The Methylobacteriaceae are a family of Hyphomicrobiales
The ''Hyphomicrobiales'' are an order of Gram-negative Alphaproteobacteria.
The rhizobia, which fi ...
'' species often appear pink, and are classified as pink-pigmented facultative methylotrophs, or
PPFMs.
The
wild type
The wild type (WT) is the phenotype of the typical form of a species as it occurs in nature. Originally, the wild type was conceptualized as a product of the standard "normal" allele at a locus, in contrast to that produced by a non-standard, "m ...
has been known to use both methane and multiple carbon compounds as energy sources.
Specifically, ''M. extorquens'' has been observed to use primarily methanol an
C1 compoundsas substrates in their energy cycles. It has been also observed that use
lanthanide
The lanthanide () or lanthanoid () series of chemical elements comprises the 15 metallic chemical elements with atomic numbers 57–71, from lanthanum through lutetium. These elements, along with the chemically similar elements scandium and yttr ...
s as a cofactor to increase its
methanol dehydrogenase
In enzymology, a methanol dehydrogenase is an enzyme that catalyzes the chemical reaction:
:methanol \rightleftharpoons formaldehyde + 2 electrons + 2H+
How the electrons are captured and transported depends upon the kind of methanol dehydrogenas ...
activity
Genetic structure
After isolation from soil, ''M. extorquens'' was found to have a single
chromosome
A chromosome is a long DNA molecule with part or all of the genetic material of an organism. In most chromosomes the very long thin DNA fibers are coated with packaging proteins; in eukaryotic cells the most important of these proteins are ...
measuring 5.71-
Mb. The bacterium itself contains 70
gene
In biology, the word gene (from , ; "...Wilhelm Johannsen coined the word gene to describe the Mendelian units of heredity..." meaning ''generation'' or ''birth'' or ''gender'') can have several different meanings. The Mendelian gene is a ba ...
s over eight
regions
In geography, regions, otherwise referred to as zones, lands or territories, are areas that are broadly divided by physical characteristics (physical geography), human impact characteristics (human geography), and the interaction of humanity and t ...
of the chromosome that are used for its metabolism of methanol.
Within a section of the chromosome, of ''M. extorquens'' AM1 are tw
xoxFgenes that enable it to grow in methanol.
''M. extorquens'' AM1 genome encodes a 47.5 kb gene of unknown function. This gene encodes an over 15,000 residue-long polypeptide along with three unique compounds that are not expressed.
The microbe uses the ''mxa'' gene as a way to dehydrogenate methanol and use it as an energy source.
Chemical use
''Methylorubrum extorquens'' uses primarily C
1 and C
2 compounds to grow.
Utilizing compounds with few carbon-carbon bonds allows the bacterium to successfully grow in environments with methanol, such as on the surface of leaves whose stomata emit methanol. The ability to use methanol as both a carbon and energy source was show to be advantageous when colonizing ''
Medicago truncatula
''Medicago truncatula'', the barrelclover, strong-spined medick, barrel medic, or barrel medick, is a small annual legume native to the Mediterranean region that is used in genomic research. It is a low-growing, clover-like plant tall with trifol ...
''.
H
4MPT-dependent formaldehyde oxidation was first isolated in ''M. extroquens'' AM1 and has been used to define if an organism is utilizing methylotrophic metabolism.
Relationships with other organisms
Many bacteria within the family ''Methylobacteriaceae'' live in differen
bioticenvironments such as soils, dust, and plant leaves.
Some of these bacteria have been found in
symbiotic
Symbiosis (from Greek , , "living together", from , , "together", and , bíōsis, "living") is any type of a close and long-term biological interaction between two different biological organisms, be it mutualistic, commensalistic, or parasit ...
relationships with the plants they inhabit in which they provide fixed nitrogen or produce
vitamin B12.
''M. extorquens'' also produce
PhyRwhich plants use to regulate
stress response
The fight-or-flight or the fight-flight-or-freeze response (also called hyperarousal or the acute stress response) is a physiological reaction that occurs in response to a perceived harmful event, attack, or threat to survival. It was first des ...
, allowing the plant to survive in different conditions. In addition to PhyR, the bacterium can produce a hormone related to overall plant and root growth.
''M. extorquens'' has been found to have a
mutualistic relationship with strawberries.
Ultimately, ''M. extorquens'' is used to oxidize 1,2-propanediol to lactaldehyde, which is later used in chemical reactions.
If introduced to blooming plants,
furaneol
Furaneol, or strawberry furanone, is an organic compound used in the flavor and perfume industry. It is formally a derivative of furan. It is a white or colorless solid that is soluble in water and organic solvents.
Odor and occurrence
Althoug ...
production increases, changing the way the strawberry tastes.
See also
* ''
Methylacidiphilum fumariolicum
''Methylacidiphilum fumariolicum '' is an autotrophic bacterium first described in 2007 growing on volcanic pools near Naples, Italy. It grows in mud at temperatures between 50 °C and 60 °C and an acidic pH of 2–5. It is able to oxi ...
''
* ''
Methylobacterium radiotolerans
Methylobacterium radiotolerans is a radiation-tolerating Gram-negative bacterium.. It has been shown that it can use lanthanide as a cofactor to increase its methanol dehydrogenase activity
See also
* Methylacidiphilum fumariolicum
* Methyl ...
''
References
External links
''Methylorubrum''J.P. Euzéby: List of Prokaryotic names with Standing in Nomenclature
''Methylobacterium extorquens''NCBI
Type strain of ''Methylobacterium extorquens'' at Bac''Dive'' - the Bacterial Diversity Metadatabase
{{Taxonbar, from=Q6824039
Hyphomicrobiales
Bacteria described in 1985
Formatotrophs