Methylophaga Thiooxydans
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''Methylophaga thiooxydans'' is a
methylotroph Methylotrophs are a diverse group of microorganisms that can use reduced one-carbon compounds, such as methanol or methane, as the carbon source for their growth; and multi-carbon compounds that contain no carbon-carbon bonds, such as dimethyl et ...
ic bacterium that requires high salt concentrations for growth. It was originally isolated from a culture of the algae ''
Emiliania huxleyi ''Emiliania huxleyi'' is a species of coccolithophore found in almost all ocean ecosystems from the equator to sub-polar regions, and from nutrient rich upwelling zones to nutrient poor oligotrophic waters. It is one of thousands of different ...
'', where it grows by breaking down dimethylsulfoniopropionate from ''E. hexleyi'' into
dimethylsulfide Dimethyl sulfide (DMS) or methylthiomethane is an organosulfur compound with the formula (CH3)2S. Dimethyl sulfide is a flammable liquid that boils at and has a characteristic disagreeable odor. It is a component of the smell produced from cook ...
and acrylate. ''M. thiooxydans'' has been implicated as a dominant organism in
phytoplankton Phytoplankton () are the autotrophic (self-feeding) components of the plankton community and a key part of ocean and freshwater ecosystems. The name comes from the Greek words (), meaning 'plant', and (), meaning 'wanderer' or 'drifter'. Ph ...
blooms, where it consumes dimethylsulfide,
methanol Methanol (also called methyl alcohol and wood spirit, amongst other names) is an organic chemical and the simplest aliphatic alcohol, with the formula C H3 O H (a methyl group linked to a hydroxyl group, often abbreviated as MeOH). It is a ...
and
methyl bromide Bromomethane, commonly known as methyl bromide, is an organobromine compound with formula C H3 Br. This colorless, odorless, nonflammable gas is produced both industrially and biologically. It has a tetrahedral shape and it is a recognized ozon ...
released by dying phytoplankton. It was also identified as one of the dominant organisms present in the plume following the ''Deepwater Horizon'' oil spill, and was identified as a major player in the breakdown of methanol in coastal surface water in the
English channel The English Channel, "The Sleeve"; nrf, la Maunche, "The Sleeve" (Cotentinais) or ( Jèrriais), (Guernésiais), "The Channel"; br, Mor Breizh, "Sea of Brittany"; cy, Môr Udd, "Lord's Sea"; kw, Mor Bretannek, "British Sea"; nl, Het Kana ...
.


Metabolism

''M. thiooxydans'' is a chemolithoheterotroph. ''Emiliania huxleyi'' produces dimethylsulfoniopropionate as an osmolyte to allow it to grow at the elevated salt concentrations in
seawater Seawater, or salt water, is water from a sea or ocean. On average, seawater in the world's oceans has a salinity of about 3.5% (35 g/L, 35 ppt, 600 mM). This means that every kilogram (roughly one liter by volume) of seawater has appro ...
, which is broken down by
bacteria Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among ...
in the mixed-culture to release dimethylsulfide and acrylate - some bacteria can use the former as a carbon and energy source - taking some of the carbon up into
biomass Biomass is plant-based material used as a fuel for heat or electricity production. It can be in the form of wood, wood residues, energy crops, agricultural residues, and waste from industry, farms, and households. Some people use the terms bi ...
and mineralising the remainder into
carbon dioxide Carbon dioxide (chemical formula ) is a chemical compound made up of molecules that each have one carbon atom covalently double bonded to two oxygen atoms. It is found in the gas state at room temperature. In the air, carbon dioxide is transpar ...
and sulfate or
thiosulfate Thiosulfate ( IUPAC-recommended spelling; sometimes thiosulphate in British English) is an oxyanion of sulfur with the chemical formula . Thiosulfate also refers to the compounds containing this anion, which are the salts of thiosulfuric acid, ...
. Most bacteria that degrade dimethylsulfide (including some ''
Methylophaga The genus ''Methylophaga'' consists of halophilic methylotrophic members of the ''Gammaproteobacteria'', all of which were isolated from marine or otherwise low water activity environments, such as the surface of marble or hypersaline lakes. The ...
'' strains) as a source of carbon leave the
sulfur Sulfur (or sulphur in British English) is a chemical element with the symbol S and atomic number 16. It is abundant, multivalent and nonmetallic. Under normal conditions, sulfur atoms form cyclic octatomic molecules with a chemical formula ...
behind in the fully oxidised form of sulfate, whereas '' Methylophaga sulfidovorans'' forms thiosulfate as the end-product of growth. ''M. thiooxydans'' performs an additional step, using the cytochrome ''c''-linked thiosulfate dehydrogenase to dimerise thiosulfate into tetrathionate, which yields electrons that can be transferred to the respiratory chain and used to produce
ATP ATP may refer to: Companies and organizations * Association of Tennis Professionals, men's professional tennis governing body * American Technical Publishers, employee-owned publishing company * ', a Danish pension * Armenia Tree Project, non ...
. The same is true for both the
endogenous Endogenous substances and processes are those that originate from within a living system such as an organism, tissue, or cell. In contrast, exogenous substances and processes are those that originate from outside of an organism. For example, es ...
thiosulfate formed in this way or
exogenous In a variety of contexts, exogeny or exogeneity () is the fact of an action or object originating externally. It contrasts with endogeneity or endogeny, the fact of being influenced within a system. Economics In an economic model, an exogeno ...
thiosulfate from the environment - in both cases, electrons from the thiosulfate dehydrogenase reduce
cytochrome Cytochromes are redox-active proteins containing a heme, with a central Fe atom at its core, as a cofactor. They are involved in electron transport chain and redox catalysis. They are classified according to the type of heme and its mode of bin ...
''c'' and are then transferred to a ''cbb''3-type cytochrome c oxidase, from which they are transferred to molecular
oxygen Oxygen is the chemical element with the symbol O and atomic number 8. It is a member of the chalcogen group in the periodic table, a highly reactive nonmetal, and an oxidizing agent that readily forms oxides with most elements as wel ...
, which - as the
terminal electron acceptor An electron acceptor is a chemical entity that accepts electrons transferred to it from another compound. It is an oxidizing agent that, by virtue of its accepting electrons, is itself reduced in the process. Electron acceptors are sometimes mista ...
is reduced to
water Water (chemical formula ) is an inorganic, transparent, tasteless, odorless, and nearly colorless chemical substance, which is the main constituent of Earth's hydrosphere and the fluids of all known living organisms (in which it acts as a ...
. The respiratory chain of this species contains a ''bc''1 complex, unlike ''
Escherichia coli ''Escherichia coli'' (),Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. also known as ''E. coli'' (), is a Gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus ''Escher ...
'' and the flavoprotein
succinate dehydrogenase Succinate dehydrogenase (SDH) or succinate-coenzyme Q reductase (SQR) or respiratory complex II is an enzyme complex, found in many bacterial cells and in the inner mitochondrial membrane of eukaryotes. It is the only enzyme that participates i ...
, which is not always present in
methylotroph Methylotrophs are a diverse group of microorganisms that can use reduced one-carbon compounds, such as methanol or methane, as the carbon source for their growth; and multi-carbon compounds that contain no carbon-carbon bonds, such as dimethyl et ...
ic or autotrophic bacteria since they do not have the complete Krebs cycle, and instead have the partial cycle dubbed Smith's horseshoe - in the case of ''
Methylophaga The genus ''Methylophaga'' consists of halophilic methylotrophic members of the ''Gammaproteobacteria'', all of which were isolated from marine or otherwise low water activity environments, such as the surface of marble or hypersaline lakes. The ...
'' species, the
fumarase Fumarase (or fumarate hydratase) is an enzyme () that catalyzes the reversible hydration/dehydration of fumarate to malate. Fumarase comes in two forms: mitochondrial and cytosolic. The mitochondrial isoenzyme is involved in the Krebs cycle and ...
and succinate dehydrogenase that are often missing are present and permit growth on a limited range of carbohydrates rather than just one-carbon compounds such as methanol or dimethylsulfide, which are metabolised not via Krebs cycle but via the ribulose monophosphate pathway (RuMP pathway, also known as the Quayle pathway). This species has a somewhat restricted range of carbon sources, including methanol, dimethylsulfide and thiophene-3-carboxylate


Research

The
genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding ge ...
sequence was completed in 2011 and was the first genome sequence of a marine
methylotroph Methylotrophs are a diverse group of microorganisms that can use reduced one-carbon compounds, such as methanol or methane, as the carbon source for their growth; and multi-carbon compounds that contain no carbon-carbon bonds, such as dimethyl et ...
. The genome is around 3MBp in length, and has a G+C fraction of 45.9 mol%.


History

''M. thiooxydans'' was isolated in 2010 from a culture of the
coccolithophore Coccolithophores, or coccolithophorids, are single celled organisms which are part of the phytoplankton, the autotrophic (self-feeding) component of the plankton community. They form a group of about 200 species, and belong either to the kingdo ...
''Emiliania huxleyi'' after
enrichment culture Enrichment culture is the use of certain growth media to favor the growth of a particular microorganism over others, enriching a sample for the microorganism of interest. This is generally done by introducing nutrients or environmental conditions th ...
using dimethylsulfide as the sole source of carbon and the sole electron donor, with molecular oxygen as the terminal electron acceptor.


References


External links


Type strain of ''Methylophaga thiooxydans'' at Bac''Dive'' - the Bacterial Diversity Metadatabase
{{taxonbar, from=Q25863260 Piscirickettsiaceae Halophiles