Maximum Clade Credibility Tree
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A maximum clade credibility tree is a
tree In botany, a tree is a perennial plant with an elongated stem, or trunk, usually supporting branches and leaves. In some usages, the definition of a tree may be narrower, including only woody plants with secondary growth, plants that are ...
that summarises the results of a Bayesian phylogenetic inference. Whereas a majority-rule tree combines the most common
clade A clade (), also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, ...
s, and usually yields a tree that wasn't sampled in the analysis, the maximum-credibility method evaluates each of the sampled posterior trees. Each clade within the tree is given a score based on the fraction of times that it appears in the set of sampled posterior trees, and the product of these scores are taken as the tree's score. The tree with the highest score is then the maximum clade credibility tree.


References

{{reflist Phylogenetics Trees (data structures)