In
coordination chemistry
A coordination complex consists of a central atom or ion, which is usually metallic and is called the ''coordination centre'', and a surrounding array of bound molecules or ions, that are in turn known as ''ligands'' or complexing agents. Many ...
, a macrocyclic ligand is a
macrocyclic ring having at least nine atoms (including all
hetero atoms) and three or more
donor sites that serve as
ligands
In coordination chemistry, a ligand is an ion or molecule (functional group) that binds to a central metal atom to form a coordination complex. The bonding with the metal generally involves formal donation of one or more of the ligand's electro ...
that can bind to a central metal ion.
Crown ether
In organic chemistry, crown ethers are cyclic chemical compounds that consist of a ring containing several ether groups (). The most common crown ethers are cyclic oligomers of ethylene oxide, the repeating unit being ethyleneoxy, i.e., . Impor ...
s and
porphyrin
Porphyrins ( ) are a group of heterocyclic macrocycle organic compounds, composed of four modified pyrrole subunits interconnected at their α carbon atoms via methine bridges (=CH−). The parent of porphyrin is porphine, a rare chemical com ...
s are prominent examples. Macrocyclic ligands exhibit high affinity for metal ions.
History
Porphyrins and
phthalocyanines
Phthalocyanine () is a large, aromatic, macrocyclic, organic compound with the formula and is of theoretical or specialized interest in chemical dyes and photoelectricity.
It is composed of four isoindole units linked by a ring of nitrogen atom ...
have long been recognized as potent ligands in coordination chemistry as illustrated by numerous
transition metal porphyrin complexes 220px, A picket-fence porphyrin complex of Fe, with axial coordination sites occupied by methylimidazole (green) and dioxygen (R = amide groups).
Transition metal porphyrin complexes are a family of coordination complexes of the conjugate base of ...
and the commercialization of
copper phthalocyanine
Copper phthalocyanine (CuPc), also called phthalocyanine blue, phthalo blue and many other names, is a bright, crystalline, synthetic blue pigment from the group of phthalocyanine dyes. Its brilliant blue is frequently used in paints and dyes ...
pigments. In the 1960s the synthesis of macrocylic ligands received much attention. One early contribution involved the synthesis of the "Curtis macrocycles", in which a metal ion serves as a
template
Template may refer to:
Tools
* Die (manufacturing), used to cut or shape material
* Mold, in a molding process
* Stencil, a pattern or overlay used in graphic arts (drawing, painting, etc.) and sewing to replicate letters, shapes or designs
Co ...
for ring formation.
Polyether macrocycles - or "crown" ligands - were also developed at that time.
A few years later, three-dimensional analogs of crown ethers called "
cryptands" were reported by Lehn and co-workers.
Macrocyclic effect
Ag(18-ane-S6) dication.png, The silver complex of a thia-crown ether
In organic chemistry, thia-crown ethers are organosulfur compounds which are the ''thia'' analogues of crown ethers (cyclic polyethers). That is, they have a sulfur atom (sulfide linkage, ) in place of each oxygen atom (ether linkage, ) around th ...
g(18-ane-S6)sup>2+
Cyclen Zinc InorgChem 1997 4579 commons.jpg, Crystal structure of a Zn(II)-cyclen
Cyclen (1,4,7,10-tetraazacyclododecane) is a aza-crown ether with the formula (CH2CH2NH)4. It is a white solid.
Synthesis
Some syntheses exploit the Thorpe-Ingold effect to facilitate ring-formation. Illustrative is the reaction of the depro ...
-ethanol
Ethanol (abbr. EtOH; also called ethyl alcohol, grain alcohol, drinking alcohol, or simply alcohol) is an organic compound. It is an Alcohol (chemistry), alcohol with the chemical formula . Its formula can be also written as or (an ethyl ...
dication.
FeTAML.png, Fe- TAML complex.
1,4,7-triazacyclononane.svg, 1,4,7-Triazacyclononane is a tridentate ligand, which is prepared without metal templating.
FeTPPCl.png, Iron(tetraporphyriinato) chloride
Cyclam.png, cyclam
Cyclam (1,4,8,11-tetraazacyclotetradecane) is an organic compound with the formula (NHCH2CH2NHCH2CH2CH2)2. Classified as an aza-crown ether, it is a white solid that is soluble in water. As a macrocyclic ligand, it binds strongly to many transitio ...
is a popular aza-crown ether
In organic chemistry, an aza-crown ether is an aza analogue of a crown ether (cyclic polyether). That is, it has a nitrogen atom (amine linkage, or ) in place of each oxygen atom (ether linkage, ) around the ring. While the parent crown ethers ...
The macrocyclic effect is the high affinity of metal cations for macrocyclic ligands, compared to their acyclic analogues. The high affinity of macrocyclic ligands is thought to be a combination of the entropic effect seen in the
chelate effect
Chelation is a type of bonding of ions and molecules to metal ions. It involves the formation or presence of two or more separate coordinate bonds between a polydentate (multiple bonded) ligand and a single central metal atom. These ligands are ...
, together with an additional energetic contribution that comes from the preorganized nature of the ligating groups (that is, no additional strains are introduced to the ligand on coordination).
Synthesis
In general, macrocyclic complexes are synthesized by combining macrocyclic ligands and metal ions.
In
template reaction
In coordination chemistry, a template reaction is any of a class of ligand-based reactions that occur between two or more adjacent coordination sites on a metal center. In the absence of the metal ion, the same organic reactants produce different ...
s, macrocyclic ligands are synthesized in the presence of metal ions. In the absence of the metal ion, the same organic reactants may produce different, often polymeric, products. The metal ion may direct the condensation preferentially to cyclic rather than polymeric products (the kinetic template effect) or stabilize the macrocycle once formed (the thermodynamic template effect). The template effect makes use of the pre-organization provided by the
coordination sphere
In coordination chemistry, the first coordination sphere refers to the array of molecules and ions (the ligands) directly attached to the central metal atom. The second coordination sphere consists of molecules and ions that attached in various ...
of the metal. The coordination modifies the electronic properties such as the acidity and electrophilicity of the ligands. When the metal atom is not desired in the final product, a disadvantage of templated synthesis is the difficulty in removing the templating metal from the macrocyclic ligand.
Phthalocyanine
Phthalocyanine () is a large, aromatic, macrocyclic, organic compound with the formula and is of theoretical or specialized interest in chemical dyes and photoelectricity.
It is composed of four isoindole units linked by a ring of nitrogen atom ...
s were the first macrocycles synthesized by template reaction. Featuring planar, dianionic, 18-membered rings with four nitrogenous ligands, phthalocyanines resemble
porphyrin
Porphyrins ( ) are a group of heterocyclic macrocycle organic compounds, composed of four modified pyrrole subunits interconnected at their α carbon atoms via methine bridges (=CH−). The parent of porphyrin is porphine, a rare chemical com ...
s.
The size of the metal
cation
An ion () is an atom or molecule with a net electrical charge.
The charge of an electron is considered to be negative by convention and this charge is equal and opposite to the charge of a proton, which is considered to be positive by convent ...
used as the template has proved to be of importance in directing the synthetic pathway for the
Schiff base
In organic chemistry, a Schiff base (named after Hugo Schiff) is a compound with the general structure ( = alkyl or aryl, but not hydrogen). They can be considered a sub-class of imines, being either secondary ketimines or secondary aldimine ...
systems. The compatibility between the radius of the template cation and the "hole" of the macrocycle contributes to the effectiveness of the synthetic pathway and to the geometry of the resulting complex.
Uses and occurrence
Phthalocyanine
Phthalocyanine () is a large, aromatic, macrocyclic, organic compound with the formula and is of theoretical or specialized interest in chemical dyes and photoelectricity.
It is composed of four isoindole units linked by a ring of nitrogen atom ...
s, as their metal complexes, are arguably the most commercially useful complex of a macrocyclic ligand. They are used as dyes and pigments such as
phthalocyanine blue.
Macrocyclic ligands occur in many cofactors in proteins and enzymes. Of particular interest are tetraazamacrocycles.
[S. J. Lippard, J. M. Berg “Principles of Bioinorganic Chemistry” University Science Books: Mill Valley, CA; 1994. .]
Heme
Heme, or haem (pronounced / hi:m/ ), is a precursor to hemoglobin, which is necessary to bind oxygen in the bloodstream. Heme is biosynthesized in both the bone marrow and the liver.
In biochemical terms, heme is a coordination complex "consisti ...
, the active site in the
hemoglobin
Hemoglobin (haemoglobin BrE) (from the Greek word αἷμα, ''haîma'' 'blood' + Latin ''globus'' 'ball, sphere' + ''-in'') (), abbreviated Hb or Hgb, is the iron-containing oxygen-transport metalloprotein present in red blood cells (erythrocyte ...
(the
metalloprotein
Metalloprotein is a generic term for a protein that contains a metal ion Cofactor (biochemistry), cofactor. A large proportion of all proteins are part of this category. For instance, at least 1000 human proteins (out of ~20,000) contain zinc-bi ...
in blood that transports oxygen), is a
porphyrin
Porphyrins ( ) are a group of heterocyclic macrocycle organic compounds, composed of four modified pyrrole subunits interconnected at their α carbon atoms via methine bridges (=CH−). The parent of porphyrin is porphine, a rare chemical com ...
that contains iron.
Chlorophyll
Chlorophyll (also chlorophyl) is any of several related green pigments found in cyanobacteria and in the chloroplasts of algae and plants. Its name is derived from the Greek words , ("pale green") and , ("leaf"). Chlorophyll allow plants to a ...
, the green
photosynthetic pigment
A photosynthetic pigment (accessory pigment; chloroplast pigment; antenna pigment) is a pigment that is present in chloroplasts or photosynthetic bacteria and captures the light energy necessary for photosynthesis.
List of photosynthetic pigmen ...
found in
plants
Plants are predominantly Photosynthesis, photosynthetic eukaryotes of the Kingdom (biology), kingdom Plantae. Historically, the plant kingdom encompassed all living things that were not animals, and included algae and fungi; however, all curr ...
, contains a
chlorin
In organic chemistry, chlorins are tetrapyrrole pigments that are partially hydrogenated porphyrins. The parent chlorin is an unstable compound which undergoes air oxidation to porphine.
The name chlorin derives from chlorophyll. Chlorophylls a ...
ring.
Vitamin B12 contains a
corrin
Corrin is a heterocyclic compound. It is the parent macrocycle related to the substituted derivative that is found in vitamin B12. Its name reflects that it is the "core" of vitamin B12 (cobalamins).Nelson, D. L.; Cox, M. M. "Lehninger, Princ ...
ring.
References
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