List Of Protein Structure Prediction Software
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This list of protein structure prediction software summarizes notable used software tools in
protein structure prediction Protein structure prediction is the inference of the three-dimensional structure of a protein from its amino acid sequence—that is, the prediction of its secondary and tertiary structure from primary structure. Structure prediction is different ...
, including
homology modeling Homology modeling, also known as comparative modeling of protein, refers to constructing an atomic-resolution model of the "''target''" protein from its amino acid sequence and an experimental three-dimensional structure of a related homologous pr ...
, protein threading, ''ab initio'' methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.


Software list

Below is a list which separates programs according to the method used for structure prediction.


Homology modeling


Threading/fold recognition


''Ab initio'' structure prediction


Secondary structure prediction

Detailed list of programs can be found at
List of protein secondary structure prediction programs List of notable protein secondary structure prediction programs See also * List of protein structure prediction software * Protein structure prediction Protein structure prediction is the inference of the three-dimensional structure of a prot ...


See also

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List of protein secondary structure prediction programs List of notable protein secondary structure prediction programs See also * List of protein structure prediction software * Protein structure prediction Protein structure prediction is the inference of the three-dimensional structure of a prot ...
*
Comparison of nucleic acid simulation software This is a list of notable computer programs that are used for nucleic acids simulations. See also References Computational chemistry software Software comparisons Molecular dynamics software Molecular modelling software {{sc ...
*
List of software for molecular mechanics modeling This is a list of computer programs that are predominantly used for molecular mechanics calculations. See also * Car–Parrinello molecular dynamics * Comparison of force-field implementations *Comparison of nucleic acid simulation software ...
*
Molecular design software Molecular design software is notable software for molecular modeling, that provides special support for developing molecular models ''de novo''. In contrast to the usual molecular modeling programs, such as for molecular dynamics and quantum chemi ...
*
Protein design Protein design is the rational design of new protein molecules to design novel activity, behavior, or purpose, and to advance basic understanding of protein function. Proteins can be designed from scratch (''de novo'' design) or by making calcul ...


External link


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finding more tools


References

{{DEFAULTSORT:Protein structure prediction software Lists of software Protein methods Protein structure Structural bioinformatics software Proteomics