The JME Molecule Editor is a

molecule editor A molecule editor is a computer program for creating and modifying representations of chemical structures. Molecule editors can manipulate chemical structure representations in either a simulated two-dimensional space or three-dimensional space, v ...

Java Java (; id, Jawa, ; jv, ꦗꦮ; su, ) is one of the Greater Sunda Islands in Indonesia. It is bordered by the Indian Ocean to the south and the Java Sea to the north. With a population of 151.6 million people, Java is the world's List ...

applet In computing, an applet is any small application that performs one specific task that runs within the scope of a dedicated widget engine or a larger program, often as a plug-in. The term is frequently used to refer to a Java applet, a program w ...

with which users make and edit drawings of

molecules A molecule is a group of two or more atoms held together by attractive forces known as chemical bonds; depending on context, the term may or may not include ions which satisfy this criterion. In quantum physics, organic chemistry, and bioche ...

and reactions (including generating substructure queries), and can display molecules within an

HTML The HyperText Markup Language or HTML is the standard markup language for documents designed to be displayed in a web browser. It can be assisted by technologies such as Cascading Style Sheets (CSS) and scripting languages such as JavaScri ...

page. The editor can generate Daylight

simplified molecular-input line-entry system The simplified molecular-input line-entry system (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings. SMILES strings can be imported by most molecule editors f ...

(SMILES) or MDL Molfiles of the created structures. The JME Editor was written by Peter Ertl while at

Comenius University Comenius University in Bratislava ( sk, Univerzita Komenského v Bratislave) is the largest university in Slovakia, with most of its faculties located in Bratislava. It was founded in 1919, shortly after the creation of Czechoslovakia. It is name ...

in Bratislava, and then at Ciba-Geigy, later merged with Sandoz Laboratories, to form

Novartis Novartis AG is a Swiss-American multinational pharmaceutical corporation based in Basel, Switzerland and Cambridge, Massachusetts, United States (global research).name="novartis.com">https://www.novartis.com/research-development/research-loc ...

International AG, in

Basel , french: link=no, Bâlois(e), it, Basilese , neighboring_municipalities= Allschwil (BL), Hégenheim (FR-68), Binningen (BL), Birsfelden (BL), Bottmingen (BL), Huningue (FR-68), Münchenstein (BL), Muttenz (BL), Reinach (BL), Riehen (BS ...

, Switzerland. It is released as

freeware Freeware is software, most often proprietary, that is distributed at no monetary cost to the end user. There is no agreed-upon set of rights, license, or EULA that defines ''freeware'' unambiguously; every publisher defines its own rules for the f ...

for noncommercial use and has become a standard for molecular-structure input on the web.

JSME

JME has been

ported In software engineering, porting is the process of adapting software for the purpose of achieving some form of execution in a computing environment that is different from the one that a given program (meant for such execution) was originally desi ...

JavaScript JavaScript (), often abbreviated as JS, is a programming language that is one of the core technologies of the World Wide Web, alongside HTML and CSS. As of 2022, 98% of Website, websites use JavaScript on the Client (computing), client side ...

using the

Google Web Toolkit Google Web Toolkit (GWT ), or GWT Web Toolkit, is an open-source set of tools that allows web developers to create and maintain JavaScript front-end applications in Java. It is licensed under the Apache License 2.0. GWT emphasizes reusab ...

(GWT). In analogy to JME, the JavaScript version is named JSME. Its interface is almost identical to that of JME, although some cosmetic options are available. It is released as

free and open-source software Free and open-source software (FOSS) is a term used to refer to groups of software consisting of both free software and open-source software where anyone is freely licensed to use, copy, study, and change the software in any way, and the source ...

under a 3-clause

BSD license BSD licenses are a family of permissive free software licenses, imposing minimal restrictions on the use and distribution of covered software. This is in contrast to copyleft licenses, which have share-alike requirements. The original BSD lic ...

in the form of minified JavaScript produced by GWT. , JSME is capable of

SMILES The simplified molecular-input line-entry system (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings. SMILES strings can be imported by most molecule editors for ...

, MOL (original and V3000),

InChI The International Chemical Identifier (InChI or ) is a textual identifier for chemical substances, designed to provide a standard way to encode molecular information and to facilitate the search for such information in databases and on the we ...

(and key), and SVG export.

References

External links

* , JME * , JSME

Notes

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Interesting cheminformatics services using the JME editor
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Freeware Computational chemistry software {{science-software-stub

JSME

See also

References

External links

Notes