Isotopomers or isotopic isomers are
isomers
In chemistry, isomers are molecules or polyatomic ions with identical molecular formulae – that is, same number of atoms of each element – but distinct arrangements of atoms in space. Isomerism is existence or possibility of isomers.
Iso ...
with
isotopic atoms, having the same number of each isotope of each element but differing in their positions. The result is that the molecules are either
constitutional isomer
In chemistry, a structural isomer (or constitutional isomer in the IUPAC nomenclature) of a chemical compound, compound is another compound whose molecule has the same number of atoms of each element, but with logically distinct chemical bond, b ...
s or
stereoisomer
In stereochemistry, stereoisomerism, or spatial isomerism, is a form of isomerism in which molecules have the same molecular formula and sequence of bonded atoms (constitution), but differ in the three-dimensional orientations of their atoms in ...
s solely based on isotopic location.
For example:
CH
3CHDCH
3 and CH
3CH
2CH
2D are a pair of constitutional isotopomers of
propane
Propane () is a three-carbon alkane with the molecular formula . It is a gas at standard temperature and pressure, but compressible to a transportable liquid. A by-product of natural gas processing and petroleum refining, it is commonly used a ...
.
(''R'')- and (''S'')-CH
3CHDOH are isotopic stereoisomers of
ethanol
Ethanol (abbr. EtOH; also called ethyl alcohol, grain alcohol, drinking alcohol, or simply alcohol) is an organic compound. It is an Alcohol (chemistry), alcohol with the chemical formula . Its formula can be also written as or (an ethyl ...
.
(''Z'')- and (''E'')-CH
3CH=CHD are examples of isotopic stereoisomers of
propene
Propylene, also known as propene, is an unsaturated organic compound with the chemical formula CH3CH=CH2. It has one double bond, and is the second simplest member of the alkene class of hydrocarbons. It is a colorless gas with a faint petrole ...
.
The term isotopomer was first proposed by
Seeman and Paine in 1992 to distinguish isotopic isomers from
isotopologues
In chemistry, isotopologues are molecules that differ only in their isotopic composition. They have the same chemical formula and bonding arrangement of atoms, but at least one atom has a different number of neutrons than the parent.
An exampl ...
(isotopic homologues).
13C-NMR
In
nuclear magnetic resonance spectroscopy
Nuclear magnetic resonance spectroscopy, most commonly known as NMR spectroscopy or magnetic resonance spectroscopy (MRS), is a spectroscopic technique to observe local magnetic fields around atomic nuclei. The sample is placed in a magnetic fiel ...
, the highly abundant
12C isotope does not produce any signal whereas the comparably rare
13C isotope is easily detected. As a result, carbon isotopomers of a compound can be studied by
carbon-13 NMR Carbon-13 (C13) nuclear magnetic resonance (most commonly known as carbon-13 NMR spectroscopy or 13C NMR spectroscopy or sometimes simply referred to as carbon NMR) is the application of nuclear magnetic resonance (NMR) spectroscopy to carbon. It is ...
to learn about the different carbon atoms in the structure. Each individual structure that contains a single
13C isotope provides data about the structure in its immediate vicinity. A large sample of a chemical contains a mixture of all such isotopomers, so a single spectrum of the sample contains data about all carbons in it. Nearly all of the carbon in normal samples of carbon-based chemicals is
12C, with only about 1%
abundance
Abundance may refer to:
In science and technology
* Abundance (economics), the opposite of scarcities
* Abundance (ecology), the relative representation of a species in a community
* Abundance (programming language), a Forth-like computer prog ...
of
13C, so there is only about a 1% abundance of the total of the singly-substituted
isotopologue
In chemistry, isotopologues are molecules that differ only in their isotopic composition. They have the same chemical formula and bonding arrangement of atoms, but at least one atom has a different number of neutrons than the parent.
An exampl ...
s, and exponentially smaller amounts of structures having two or more
13C in them. The rare case where two adjacent carbon atoms in a single structure are both
13C causes a detectable
coupling effect between them as well as signals for each one itself. The
INADEQUATE Two-dimensional nuclear magnetic resonance spectroscopy (2D NMR) is a set of nuclear magnetic resonance spectroscopy (NMR) methods which give data plotted in a space defined by two frequency axes rather than one. Types of 2D NMR include correlation ...
correlation experiment uses this effect to provide evidence for which carbon atoms in a structure are attached to each other, which can be useful for determining the actual structure of an unknown chemical.
Reaction kinetics
In reaction kinetics, a rate effect is sometimes observed between different isotopomers of the same chemical. This
kinetic isotope effect
In physical organic chemistry, a kinetic isotope effect (KIE) is the change in the reaction rate of a chemical reaction when one of the atoms in the reactants is replaced by one of its isotopes. Formally, it is the ratio of rate constants for th ...
can be used to study reaction mechanisms by analyzing how the differently massed atom is involved in the process.
In biochemistry differences between the isotopomers of biochemicals such as starches is of practical importance in archaeology. They offer clues to the diet of prehistoric humans that lived as long ago as paleolithic times. This is because naturally occurring
carbon dioxide
Carbon dioxide (chemical formula ) is a chemical compound made up of molecules that each have one carbon atom covalently double bonded to two oxygen atoms. It is found in the gas state at room temperature. In the air, carbon dioxide is transpar ...
contains both
12C and
13C.
Monocots
Monocotyledons (), commonly referred to as monocots, (Lilianae ''sensu'' Chase & Reveal) are grass and grass-like flowering plants (angiosperms), the seeds of which typically contain only one embryonic leaf, or cotyledon. They constitute one of t ...
, such as
rice
Rice is the seed of the grass species ''Oryza sativa'' (Asian rice) or less commonly ''Oryza glaberrima
''Oryza glaberrima'', commonly known as African rice, is one of the two domesticated rice species. It was first domesticated and grown i ...
and
oat
The oat (''Avena sativa''), sometimes called the common oat, is a species of cereal grain grown for its seed, which is known by the same name (usually in the plural, unlike other cereals and pseudocereals). While oats are suitable for human con ...
s, differ from
dicots, such as
potato
The potato is a starchy food, a tuber of the plant ''Solanum tuberosum'' and is a root vegetable native to the Americas. The plant is a perennial in the nightshade family Solanaceae.
Wild potato species can be found from the southern Unit ...
es and
tree fruit
A fruit tree is a tree which bears fruit that is consumed or used by animals and humans — all trees that are flowering plants produce fruit, which are the ripened ovaries of flowers containing one or more seeds. In horticultural usage, ...
s, in the relative amounts of
12CO
2 and
13CO
2 that they incorporate into their tissues as products of
photosynthesis
Photosynthesis is a process used by plants and other organisms to convert light energy into chemical energy that, through cellular respiration, can later be released to fuel the organism's activities. Some of this chemical energy is stored i ...
. When tissues of such subjects are recovered, usually tooth or bone, the relative isotopic content can give useful indications of the main source of the
staple food
A staple food, food staple, or simply a staple, is a food that is eaten often and in such quantities that it constitutes a dominant portion of a standard diet for a given person or group of people, supplying a large fraction of energy needs and ...
s of the subjects of the investigations.
See also
*
Mass (mass spectrometry)
The mass recorded by a mass spectrometer can refer to different physical quantities depending on the characteristics of the instrument and the manner in which the mass spectrum is displayed.
Units
The dalton (symbol: Da) is the standard unit tha ...
*
Isotopocule
Isotopocule is a shorthand for an isotopically substituted molecule. Isotopocules are molecules that differ only in their isotopic composition or the intramolecular position of the isotopes. It is an umbrella term for the more specific terms is ...
References
{{reflist
Physical chemistry
Isomerism