Helicoverpa Zea Nudivirus 2
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''Helicoverpa zea'' nudivirus 2 (HzNV-2, Hz-2V, gonad specific virus ''GSV or ''Heliothis zea'' nudivirus 2) is an enveloped,
rod-shaped A bacillus (), also called a bacilliform bacterium or often just a rod (when the context makes the sense clear), is a rod-shaped bacterium or archaeon. Bacilli are found in many different taxonomic groups of bacteria. However, the name ''Bacillu ...
, nonoccluded, double stranded DNA (dsDNA) sexually transmitted virus whose natural host is the corn earworm moth. At about 440 by 90  nm, it is the causative agent of the only sexually transmitted viral disease of any insect. It was originally identified in a colony of corn earworm moths established and maintained in
Stoneville, Mississippi Stoneville is a census-designated place and unincorporated community located in northeastern Washington County, Mississippi. Deer Creek flows through Stoneville. A post office was established in 1876, and remains open. Stoneville was incorpora ...
, U.S. and was found to be responsible for the sterility of those infected. The virus does not always cause sterility, though. Many moths are asymptomatic carriers of the virus. Infected female hosts mate much more than those uninfected. With more mating events, the virus spreads to several males. Fertile female hosts may also pass the virus on through their eggs. HzNV-2 is closely related to HzNV-1; it is likely that HzNV-1 is a variant of HzNV-2 which exists in a persistent state in infected moths. HzNV-2 was discovered in 1995. Originally, symptomatic hosts were described as being "agonadal". Then, the virus was given the name "gonad specific virus". It was later given the name "''Helicoverpa zea'' nudivirus 2" because of the similar physical properties between it and HzNV-1, which had been described about 20 years prior. It is highly unlikely that the common effects of HzNV-2 on their hosts, malformed reproductive tissues causing infertility, would have been selected for establishing an ovarian cell line. It is more likely that those chosen moths were asymptomatic. Their common ancestor is believed to share a common ancestor with
baculovirus ''Baculoviridae'' is a family of viruses. Arthropod Arthropods (, (gen. ποδός)) are invertebrate animals with an exoskeleton, a Segmentation (biology), segmented body, and paired jointed appendages. Arthropods form the phylum Arthropod ...
es, a family of viruses whose natural hosts are decapods,
arthropod Arthropods (, (gen. ποδός)) are invertebrate animals with an exoskeleton, a Segmentation (biology), segmented body, and paired jointed appendages. Arthropods form the phylum Arthropoda. They are distinguished by their jointed limbs and Arth ...
s,
hymenoptera Hymenoptera is a large order (biology), order of insects, comprising the sawfly, sawflies, wasps, bees, and ants. Over 150,000 living species of Hymenoptera have been described, in addition to over 2,000 extinct ones. Many of the species are Par ...
,
diptera Flies are insects of the order Diptera, the name being derived from the Greek δι- ''di-'' "two", and πτερόν ''pteron'' "wing". Insects of this order use only a single pair of wings to fly, the hindwings having evolved into advanced ...
, and
lepidoptera Lepidoptera ( ) is an order (biology), order of insects that includes butterfly, butterflies and moths (both are called lepidopterans). About 180,000 species of the Lepidoptera are described, in 126 Family (biology), families and 46 Taxonomic r ...
.


Pathology

The natural host of HzNV-2 is the corn earworm moth (''Helicoverpa zea''). The virus is spread to offspring through their mothers' eggs (
Vertical transmission Vertical transmission of symbionts is the transfer of a microbial symbiont from the parent directly to the offspring.  Many metazoan species carry symbiotic bacteria which play a mutualistic, commensal, or parasitic role.  A symbiont is acquire ...
) and through mating attempts between adult moths (
Horizontal transmission Horizontal transmission is the transmission of organisms between biotic and/or abiotic members of an ecosystem that are not in a parent-progeny relationship. This concept has been generalized to include transmissions of infectious agents, symbiont ...
). Infected moths are referred to as either asymptomatic (AS) or agonadal (AG), due to the virus causing larvae to never form functional gonads. HzNV-2 is very common among wild moths, and it is very able to survive in host populations.


Asymptomatic carriers

Persistent replication of HzNV-2 in insect hosts make
asymptomatic In medicine, any disease is classified asymptomatic if a patient tests as carrier for a disease or infection but experiences no symptoms. Whenever a medical condition fails to show noticeable symptoms after a diagnosis it might be considered asy ...
(AS),
fertile Fertility is the capability to produce offspring through reproduction following the onset of sexual maturity. The fertility rate is the average number of children born by a female during her lifetime and is quantified demographically. Fertilit ...
carriers. Unlike baculoviruses, the productive replication of this virus does not kill the hosts. Instead, it causes malformed
gonad A gonad, sex gland, or reproductive gland is a mixed gland that produces the gametes and sex hormones of an organism. Female reproductive cells are egg cells, and male reproductive cells are sperm. The male gonad, the testicle, produces sper ...
s, sterilizing the hosts. When healthy females mate with infected males, the offspring are infected through the
egg An egg is an organic vessel grown by an animal to carry a possibly fertilized egg cell (a zygote) and to incubate from it an embryo within the egg until the embryo has become an animal fetus that can survive on its own, at which point the a ...
s ( transovarially). Typically, some of the offspring are
infertile Infertility is the inability of a person, animal or plant to reproduce by natural means. It is usually not the natural state of a healthy adult, except notably among certain eusocial species (mostly haplodiploid insects). It is the normal state ...
while others are infected, AS carriers. Whether or not the offspring is AS or agonadal is dependent on how much viral particle content they receive from their mothers. The amount of virus mothers spread to their children increases over the time of infection. In fact, most infected,
wild Wild, wild, wilds or wild may refer to: Common meanings * Wild animal * Wilderness, a wild natural environment * Wildness, the quality of being wild or untamed Art, media and entertainment Film and television * ''Wild'' (2014 film), a 2014 A ...
female moths are fertile and AS carriers, and infected females account for up to 69% of all wild females. When they mate with sterile, infected moths are still able to spread the virus through mating. After mating, the virus productively replicates inside the females, which makes the viral dose increase on successive oviposition days. These abilities to spread differently through hosts that are both asymptomatic and symptomatic and that spread the virus vertically to offspring and horizontally to mates makes HzNV-2 very fit and able to coexist well in the wild with its host.


Symptomatic hosts

HzNV-2 is able to change the molecular processes of their hosts. Though infected larvae appear to be very normal, when they emerge from their cocoons as adults, they may be without gonads. This condition is described as being "agonadal". The reproductive systems of both sexes are malformed as appear as a large "Y" shape. Female hosts infected through vertical transmission often do not develop several reproductive structures, including their
ovaries The ovary is an organ in the female reproductive system that produces an ovum. When released, this travels down the fallopian tube into the uterus, where it may become fertilized by a sperm. There is an ovary () found on each side of the body. T ...
,
bursa copulatrix ( grc-gre, Προῦσα, Proûsa, Latin: Prusa, ota, بورسه, Arabic:بورصة) is a city in northwestern Turkey and the administrative center of Bursa Province. The fourth-most populous city in Turkey and second-most populous in the ...
,
accessory gland This glossary of entomology describes terms used in the formal study of insect species by entomologists. A–C A synthetic chlorinated hydrocarbon insecticide, toxic to vertebrates. Though i ...
s, and
spermatheca The spermatheca (pronounced plural: spermathecae ), also called receptaculum seminis (plural: receptacula seminis), is an organ of the female reproductive tract in insects, e.g. ants, bees, some molluscs, oligochaeta worms and certain other ...
. In addition, their common and lateral
oviduct The oviduct in mammals, is the passageway from an ovary. In human females this is more usually known as the Fallopian tube or uterine tube. The eggs travel along the oviduct. These eggs will either be fertilized by spermatozoa to become a zygote, o ...
s are malformed and enlarged. Viral replication in female gonads result in
hypertrophy Hypertrophy is the increase in the volume of an organ or tissue due to the enlargement of its component cells. It is distinguished from hyperplasia, in which the cells remain approximately the same size but increase in number.Updated by Linda J ...
of the oviducts and proliferation of the cells making up these tissues. These enlargements appear to begin as early as their last instar as larvae. The lateral oviducts of healthy, adult female moths areone or two cell layers; those of infected female moths have four to eight layers instead. These enlargements may increase virus production. HzNV-2 also causes the formation of a "viral plug" that prolongs their mating behaviors and serves as a source of contamination for males attempting to mate. Infected females also produce five to seven times more
sex pheromone Sex pheromones are pheromones released by an organism to attract an individual of the same species, encourage them to mate with them, or perform some other function closely related with sexual reproduction. Sex pheromones specifically focus on ind ...
than those uninfected and attract two times as many mates. While mating, female moths will continue to call to other males, uncharacteristic of the species. Since the virus can spread horizontally through
sex Sex is the trait that determines whether a sexually reproducing animal or plant produces male or female gametes. Male plants and animals produce smaller mobile gametes (spermatozoa, sperm, pollen), while females produce larger ones (ova, oft ...
, this transmits it quicker. Infected males may grow to have small, unfused
testes A testicle or testis (plural testes) is the male reproductive gland or gonad in all bilaterians, including humans. It is homologous to the female ovary. The functions of the testes are to produce both sperm and androgens, primarily testoster ...
, no
seminal vesicle The seminal vesicles (also called vesicular glands, or seminal glands) are a pair of two convoluted tubular glands that lie behind the urinary bladder of some male mammals. They secrete fluid that partly composes the semen. The vesicles are 5 ...
s, vas deferencia, or
accessory gland This glossary of entomology describes terms used in the formal study of insect species by entomologists. A–C A synthetic chlorinated hydrocarbon insecticide, toxic to vertebrates. Though i ...
s. Accessory glands produce pheromonostatic peptide (PSP), which inhibits the amount of mating pheromones females make. Without PSP, female moths continue to attract more partners. The tissues needed for the initiation of
copulation Sexual intercourse (or coitus or copulation) is a sexual activity typically involving the insertion and thrusting of the penis into the vagina for sexual pleasure or reproduction.Sexual intercourse most commonly means penile–vaginal penetrat ...
and the transfer of reproductive fluids during mating function normally. The lumen of the primary simplex of infected male moths is greatly filled with virus particles that they very likely transmit to healthy females without fertilizing them.


Genome

The
genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding ge ...
of HzNV-2 is a circular double-stranded DNA molecule of 231,621 bp, making it the largest dsDNA insect virus. It has a
guanine-cytosine content In molecular biology and genetics, GC-content (or guanine-cytosine content) is the percentage of nitrogenous bases in a DNA or RNA molecule that are either guanine (G) or cytosine (C). This measure indicates the proportion of G and C bases out ...
of 41.9%. It contains 376
open reading frame In molecular biology, open reading frames (ORFs) are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a prokaryotic DNA sequence, where only one of the six possible readin ...
s (ORFs) coding more than 60
amino acid Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although hundreds of amino acids exist in nature, by far the most important are the alpha-amino acids, which comprise proteins. Only 22 alpha am ...
s. Of the 113 ORFs that are likely to encode
protein Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions within organisms, including catalysing metabolic reactions, DNA replication, respo ...
s, 66 are on the forward strand of DNA, the other 47 on the reverse. All of these are evenly arranged, producing 29 clusters of 1 to 6 ORFs. The average ORF is 1.4 kb in length, though the sizes range from 189 bp and 5.7 kb. The
gene density In genetics, the gene density of an organism's genome is the ratio of the number of genes per number of base pairs, usually written in terms of a million base pairs, or ''megabase'' (Mb). The human genome has a gene density of 11-15 genes/Mb, while ...
of HzNV-2 is one gene per 2.05 kb with a coding density of 68%. The HsNV-2 genome shares
homology Homology may refer to: Sciences Biology *Homology (biology), any characteristic of biological organisms that is derived from a common ancestor * Sequence homology, biological homology between DNA, RNA, or protein sequences *Homologous chrom ...
with 16 conserved baculovirus core genes. Since HzNV-1 shares all of these homologous genes with baculovirus genome and four more, it is very likely that HsNV-1 and HzNV-2 have a recent common ancestor and their common ancestor diverged from a common ancestor of the baculoviruses. 75 of the virus' 113 putative genes have poor or no
homology Homology may refer to: Sciences Biology *Homology (biology), any characteristic of biological organisms that is derived from a common ancestor * Sequence homology, biological homology between DNA, RNA, or protein sequences *Homologous chrom ...
to any other known genes, except with genes of HzNV-1. Of the 38 genes with homologues, 6 are involved in
DNA replication In molecular biology, DNA replication is the biological process of producing two identical replicas of DNA from one original DNA molecule. DNA replication occurs in all living organisms acting as the most essential part for biological inheritanc ...
, 4 in
transcription Transcription refers to the process of converting sounds (voice, music etc.) into letters or musical notes, or producing a copy of something in another medium, including: Genetics * Transcription (biology), the copying of DNA into RNA, the fir ...
, 5 in
nucleic acid metabolism Nucleic acid metabolism is a collective term that refers to the variety of chemical reactions by which nucleic acids ( DNA and/or RNA) are either synthesized or degraded. Nucleic acids are polymers (so-called "biopolymers") made up of a variety of ...
, 3 structural proteins.


Comparison to HsNV-1

Both viruses can replicate in
cell culture Cell culture or tissue culture is the process by which cells are grown under controlled conditions, generally outside of their natural environment. The term "tissue culture" was coined by American pathologist Montrose Thomas Burrows. This te ...
s, though only HzNV-2 can replicate in an insect host. The genomes of HzNV-2 and HzNV-1 are very similar, sharing a 93.5%
sequence identity In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Ali ...
. Of the 113 putative genes, the viruses share 97 that are not overlapping or inverted. There is a 5.1 kb area at 174.7-179.8 kb region of HsNV-2 that has no equivalent in the genome of HzNV-1. In this region of HsNV-2, three ORFs are found: Hz2V008, Hz2V091, and Hz2V092. In total, 14 ORFs identified in HsNV-2 are not found in the HzNV-1 genome. None of which have been determined to share sequence homology with any genes of known function.


Genes related to DNA replication and repair

The
C-terminal The C-terminus (also known as the carboxyl-terminus, carboxy-terminus, C-terminal tail, C-terminal end, or COOH-terminus) is the end of an amino acid chain (protein or polypeptide), terminated by a free carboxyl group (-COOH). When the protein is ...
region of Hz2V008 has homology with the
catalytic Catalysis () is the process of increasing the rate of a chemical reaction by adding a substance known as a catalyst (). Catalysts are not consumed in the reaction and remain unchanged after it. If the reaction is rapid and the catalyst recyc ...
domain for
integrase Retroviral integrase (IN) is an enzyme produced by a retrovirus (such as HIV) that integrates—forms covalent links between—its genetic information into that of the host cell it infects. Retroviral INs are not to be confused with phage int ...
and recombinase, which has DNA breaking and rejoining activity. This region of HsNV-2's genome has similarity to the INT_REC_C conserved domain. This domain is related to
phage integrase Site-specific recombination, also known as conservative site-specific recombination, is a type of genetic recombination in which DNA strand exchange takes place between segments possessing at least a certain degree of sequence homology. Enzymes kno ...
and
bacterial Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among ...
and yeast recombinase. It also contains motif cores for
DNA binding site DNA binding sites are a type of binding site found in DNA where other molecules may bind. DNA binding sites are distinct from other binding sites in that (1) they are part of a DNA sequence (e.g. a genome) and (2) they are bound by DNA-binding ...
s, catalytic residues, the
active site In biology and biochemistry, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction. The active site consists of amino acid residues that form temporary bonds with the substrate (binding site) a ...
s, and
topoisomerase DNA topoisomerases (or topoisomerases) are enzymes that catalyze changes in the topological state of DNA, interconverting relaxed and supercoiled forms, linked (catenated) and unlinked species, and knotted and unknotted DNA. Topological issues i ...
. The best similarity to this gene comes from monodon baculovirus and ''Gryllus bimaculatus'' nudivirus (GbNV), suggesting a possible common ancestor. The C-terminal region of Hz2V018 has homology to
DNA polymerase A DNA polymerase is a member of a family of enzymes that catalyze the synthesis of DNA molecules from nucleoside triphosphates, the molecular precursors of DNA. These enzymes are essential for DNA replication and usually work in groups to create ...
. It has great similarity to the ''Oryctes rhinoceros'' nudivirus' (OrNV) DNA polymerase and the DNA-dependent DNA polymerase type-B family ( POLBc) conserved domain, which is linked with DNA binding,
polymerase A polymerase is an enzyme ( EC 2.7.7.6/7/19/48/49) that synthesizes long chains of polymers or nucleic acids. DNA polymerase and RNA polymerase are used to assemble DNA and RNA molecules, respectively, by copying a DNA template strand using base- ...
, and 3'-5'
exonuclease Exonucleases are enzymes that work by cleaving nucleotides one at a time from the end (exo) of a polynucleotide chain. A hydrolyzing reaction that breaks phosphodiester bonds at either the 3′ or the 5′ end occurs. Its close relative is the ...
activity. This region also contains the well-conserved nucleotide binding motif, K(3x)NS(x)YG(2x)G, at 842-853 aa and the polymerase catalytic motif, YxDTD, at 892-897 aa. The 256 aa long
N-terminal The N-terminus (also known as the amino-terminus, NH2-terminus, N-terminal end or amine-terminus) is the start of a protein or polypeptide, referring to the free amine group (-NH2) located at the end of a polypeptide. Within a peptide, the ami ...
region of Hz2V029 is similar to the C-terminal region of the SbcC conserved domain, a
prokaryotic A prokaryote () is a Unicellular organism, single-celled organism that lacks a cell nucleus, nucleus and other membrane-bound organelles. The word ''prokaryote'' comes from the Greek language, Greek wikt:πρό#Ancient Greek, πρό (, 'before') a ...
ortholog of the
rad50 DNA repair protein RAD50, also known as RAD50, is a protein that in humans is encoded by the ''RAD50'' gene. Function The protein encoded by this gene is highly similar to ''Saccharomyces cerevisiae'' Rad50, a protein involved in DNA double- ...
gene of
human Humans (''Homo sapiens'') are the most abundant and widespread species of primate, characterized by bipedalism and exceptional cognitive skills due to a large and complex brain. This has enabled the development of advanced tools, culture, ...
s which has
ATPase ATPases (, Adenosine 5'-TriPhosphatase, adenylpyrophosphatase, ATP monophosphatase, triphosphatase, SV40 T-antigen, ATP hydrolase, complex V (mitochondrial electron transport), (Ca2+ + Mg2+)-ATPase, HCO3−-ATPase, adenosine triphosphatase) are ...
activity and is a critical part of DNA double-strand break repair. In totality, the gene is 823 aa long. This gene is most similar to the GbNV putative desmoplakin and ''Spodoptera frugiperda'' ascovirus 1a SbcC/ATPase domain. The C-terminal region of Hz2V038 is similar to a
poxvirus ''Poxviridae'' is a family of double-stranded DNA viruses. Vertebrates and arthropods serve as natural hosts. There are currently 83 species in this family, divided among 22 genera, which are divided into two subfamilies. Diseases associated wit ...
D5 protein and it has homology
DNA helicase Helicases are a class of enzymes thought to be vital to all organisms. Their main function is to unpack an organism's genetic material. Helicases are motor proteins that move directionally along a nucleic acid phosphodiester backbone, separatin ...
, essential for
virus replication Viral replication is the formation of biological viruses during the infection process in the target host cells. Viruses must first get into the cell before viral replication can occur. Through the generation of abundant copies of its genome an ...
. The most homologous gene is found in the ''Ectoropis oblique'' nucleopolyhedrovirus (NPV). Hz2V070 has the most similarity to the
xeroderma pigmentosum Xeroderma pigmentosum (XP) is a genetic disorder in which there is a decreased ability to repair DNA damage such as that caused by ultraviolet (UV) light. Symptoms may include a severe sunburn after only a few minutes in the sun, freckling in sun- ...
G (XPG) enzyme, which is related to other enzymes playing roles in nucleotide-excision repair and
transcription-coupled repair Nucleotide excision repair is a DNA repair mechanism. DNA damage occurs constantly because of chemicals (e.g. intercalating agents), radiation and other mutagens. Three excision repair pathways exist to repair single stranded DNA damage: Nucleo ...
of oxidative DNA damage.


Genes related to RNA transcription

Hz2V028 shows homology with the baculovirus very late expression factor 1 ('' vlf-1''), necessary for burst expression of the genes '' polyhedrin'' and '' p10''. ''Vlf-1'' is a transcription initiation factor that recognizes and binds to DTAAG, a promoter motif of baculovirus very late genes, though it is likely Hz2V028 recognizes a different motif. Hz2V040 is closest in similarity to '' Spodoptera furugiperda'' NPV ''lef-5''. It has characteristic
zinc Zinc is a chemical element with the symbol Zn and atomic number 30. Zinc is a slightly brittle metal at room temperature and has a shiny-greyish appearance when oxidation is removed. It is the first element in group 12 (IIB) of the periodi ...
ribbon motif for DNA binding, and it likely has transcriptional initiation activity. Hz2V043 most likely plays a role in
mRNA In molecular biology, messenger ribonucleic acid (mRNA) is a single-stranded molecule of RNA that corresponds to the genetic sequence of a gene, and is read by a ribosome in the process of Protein biosynthesis, synthesizing a protein. mRNA is ...
5'-capping and is likely able to from stable enzyme-nucleotide monophosphate complexes for guanylation, like GbNV ''lef-4''. Hz2V051 is most similar to GbNV ''lef-8'', which helps encode one of the main catalytic subunits of the baculovirus
RNA polymerase In molecular biology, RNA polymerase (abbreviated RNAP or RNApol), or more specifically DNA-directed/dependent RNA polymerase (DdRP), is an enzyme that synthesizes RNA from a DNA template. Using the enzyme helicase, RNAP locally opens the ...
. Hz2V063 shows homology to the N-terminal region of the nudivirus and baculovirus LEF-9. It may, then, have a part in RNA polymerase.


Genes related to virus entry

Hz2V026 is most similar to GbNV ''pif-2'' and ''Autographa californica'' multiple nucleopolyhedrovirus (AcMPV), and it may form
disulfide bond In biochemistry, a disulfide (or disulphide in British English) refers to a functional group with the structure . The linkage is also called an SS-bond or sometimes a disulfide bridge and is usually derived by the coupling of two thiol groups. In ...
s and be a structural component of the occlusion-derived
virus envelope A viral envelope is the outermost layer of many types of viruses. It protects the genetic material in their life cycle when traveling between host cells. Not all viruses have envelopes. Numerous human pathogenic viruses in circulation are encase ...
. zz Hz2V053 is a homologue of baculovirus ''pif-3'' and GbNV ''pif-3''. It contains an N-terminal
transmembrane A transmembrane protein (TP) is a type of integral membrane protein that spans the entirety of the cell membrane. Many transmembrane proteins function as gateways to permit the transport of specific substances across the membrane. They frequentl ...
domain. Hz2V082 is a homologue of the GbNV ''pif-1'' gene and is very similar to the ''Spodoptera littoralis'' NPV (SlNPV). It is likely responsible for oral infectivity through directly binding the virus particle to host cells. Hz2V106 shows homology with baculovirus ''p74'' and likely mediates the specific binding of the virus particle to host cells by aiding the formation of disulfide bonds inside its C-terminal transmembrane's membrane anchoring domain.


Genes related to nucleic acid metabolism

Hz2V035 is most similar to ''Bombyx mori'' thymidlylate synthase and is likely involved in the synthesis of
dTMP Thymidine monophosphate (TMP), also known as thymidylic acid (conjugate base thymidylate), deoxythymidine monophosphate (dTMP), or deoxythymidylic acid (conjugate base deoxythymidylate), is a nucleotide that is used as a monomer in DNA. It is an ...
precursors from dUTP. Hz2V047 and Hz2V065 are most similar to SlNPV sibonucleotide reductase large (RR1) and small subunit (RR2) respectively. RR1 and RR2 help reduce ribonucleotides to deoxyribonucleotides in order to produce precursors of DNA. Hz2V066 is most homologous with the ''Bombyx mori'' serine hydroxymethyltransferase (SHMT), which catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate. Hz2V067 is most similar to ''
Drosophila melanogaster ''Drosophila melanogaster'' is a species of fly (the taxonomic order Diptera) in the family Drosophilidae. The species is often referred to as the fruit fly or lesser fruit fly, or less commonly the "vinegar fly" or "pomace fly". Starting with Ch ...
'' deoxynucleotide kinase (dNK). dNK catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates and it is a key enzyme involved in salvaging deoxyribonucleosides. Hz2V069 encodes a protein 350 aa long and is most homologous with ''
Culex quinquefasciatus ''Culex'' is a genus of mosquitoes, several species of which serve as vectors of one or more important diseases of birds, humans, and other animals. The diseases they vector include arbovirus infections such as West Nile virus, Japanese encep ...
''
dUTPase In Enzymology, a dUTP diphosphatase () is an enzyme that catalysis, catalyzes the chemical reaction :dUTP + H2O \rightleftharpoons dUMP + diphosphate Thus, the two substrate (biochemistry), substrates of this enzyme are Deoxyuridine triphosph ...
. dUTPase helps minimize the misincoporation of uracil into virus DNA during replication, and it may be a key enzyme in HzNV-2 replication and latency in asymptomatic carriers. Hz2V093 is similar to HzNV-1 ORF65, and it may play a role in RNA capping while not being essential for virus replication. Hz2V111 is a homologue of ''
Heliothis virescens ''Chloridea virescens'', commonly known as the tobacco budworm, is a moth of the family Noctuidae found throughout the eastern and southwestern United States along with parts of Central America and South America. It is a major pest of field cro ...
''
dihydrofolate reductase Dihydrofolate reductase, or DHFR, is an enzyme that reduces dihydrofolic acid to tetrahydrofolic acid, using NADPH as an electron donor, which can be converted to the kinds of tetrahydrofolate cofactors used in 1-carbon transfer chemistry. In ...
(DHFR) and to
herpesvirus ''Herpesviridae'' is a large family of DNA viruses that cause infections and certain diseases in animals, including humans. The members of this family are also known as herpesviruses. The family name is derived from the Greek word ''ἕρπειν ...
DHFR. DHFR reduces
dihydrofolate Dihydrofolic acid (conjugate base dihydrofolate) (DHF) is a folic acid (vitamin B9, vitamin B9) derivative which is converted to tetrahydrofolic acid by dihydrofolate reductase. Since tetrahydrofolate is needed to make both purines and pyrimidine ...
into
tetrahydrofolate Tetrahydrofolic acid (THFA), or tetrahydrofolate, is a folic acid derivative. Metabolism Human synthesis Tetrahydrofolic acid is produced from dihydrofolic acid by dihydrofolate reductase. This reaction is inhibited by methotrexate. It is co ...
, which is necessary for DNA synthesis to take place.


Genes related to structural proteins

Hz2V062 is most similar to GbNV ''odv-e56''. Hz2V089 is homologous to baculovirus ''vp91''. Hz2V108 is a homologue of MBV 38K protein gene, which is crucial for
nucleocapsid A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or may ...
assembly.


Auxiliary and undefined genes

Hz2V007 is very similar to the ''
Bombyx mori The domestic silk moth (''Bombyx mori''), is an insect from the moth family Bombycidae. It is the closest relative of ''Bombyx mandarina'', the wild silk moth. The silkworm is the larva or caterpillar of a silk moth. It is an economically imp ...
''
carboxylesterase The enzyme carboxylesterase (or carboxylic-ester hydrolase, EC 3.1.1.1; systematic name carboxylic-ester hydrolase) catalyzes reactions of the following form: :a carboxylic ester + H2O \rightleftharpoons an alcohol + a carboxylate Most enzymes f ...
(COE) and, to a lesser degree, ''
Anopheles gambiae The ''Anopheles gambiae'' complex consists of at least seven morphologically indistinguishable species of mosquitoes in the genus ''Anopheles''. The complex was recognised in the 1960s and includes the most important vectors of malaria in sub- ...
'' juvenile hormone esterase (JHE). This high similarity may mean that HzNV-2 can control the
physiology Physiology (; ) is the scientific study of functions and mechanisms in a living system. As a sub-discipline of biology, physiology focuses on how organisms, organ systems, individual organs, cells, and biomolecules carry out the chemical ...
of infected hosts through the regulation of
Juvenile hormone Juvenile hormones (JHs) are a group of acyclic sesquiterpenoids that regulate many aspects of insect physiology. The first discovery of a JH was by Vincent Wigglesworth. JHs regulate development, reproduction, diapause, and polyphenisms.The chemic ...
levels and the level of gene expression occurring at different stages of their development. In addition, this gene more closely resembles a host gene than a viral gene. Hz2V012 and Hz2V015 encode
inhibitor of apoptosis Inhibitors of apoptosis are a group of proteins that mainly act on the intrinsic pathway that block programmed cell death, which can frequently lead to cancer or other effects for the cell if mutated or improperly regulated. Many of these inhibito ...
(IAP) homologues. Hz2V023 shows homology to the
major facilitator superfamily The major facilitator superfamily (MFS) is a superfamily of membrane transport proteins that facilitate movement of small solutes across cell membranes in response to chemiosmotic gradients. Function The major facilitator superfamily (MFS) are ...
(MFS), specifically ''
Aedes aegypti ''Aedes aegypti'', the yellow fever mosquito, is a mosquito that can spread dengue fever, chikungunya, Zika fever, Mayaro and yellow fever viruses, and other disease agents. The mosquito can be recognized by black and white markings on its legs ...
''
adenylate cyclase Adenylate cyclase (EC 4.6.1.1, also commonly known as adenyl cyclase and adenylyl cyclase, abbreviated AC) is an enzyme with systematic name ATP diphosphate-lyase (cyclizing; 3′,5′-cyclic-AMP-forming). It catalyzes the following reaction: :A ...
. MFS is a group of transporter genes found exclusively in
living organisms In biology, an organism () is any life, living system that functions as an individual entity. All organisms are composed of cells (cell theory). Organisms are classified by taxonomy (biology), taxonomy into groups such as Multicellular o ...
and this virus. They code for carrier proteins involved in uptaking and effluxing
small molecule Within the fields of molecular biology and pharmacology, a small molecule or micromolecule is a low molecular weight (≤ 1000 daltons) organic compound that may regulate a biological process, with a size on the order of 1 nm. Many drugs ar ...
s, particularly
sugar Sugar is the generic name for sweet-tasting, soluble carbohydrates, many of which are used in food. Simple sugars, also called monosaccharides, include glucose, fructose, and galactose. Compound sugars, also called disaccharides or double ...
and drugs respectively. This gene more closely resembles host genes than viral genes. In fact, an MFS gene has never before been found in a viral genome; it is found exclusively in living species genomes. The protein it encodes for likely facilitates the enhanced
metabolism Metabolism (, from el, μεταβολή ''metabolē'', "change") is the set of life-sustaining chemical reactions in organisms. The three main functions of metabolism are: the conversion of the energy in food to energy available to run cell ...
necessary for the
cell proliferation Cell proliferation is the process by which ''a cell grows and divides to produce two daughter cells''. Cell proliferation leads to an exponential increase in cell number and is therefore a rapid mechanism of tissue growth. Cell proliferation re ...
in the infected hosts' reproductive tissues Hz2V034 is relatively similar to the guanosine monophosphate kinase (GMPK) and most homologous with the hypothetical protein of monodon baculovirus. GMPK transfers the terminal phosphate group of
ATP ATP may refer to: Companies and organizations * Association of Tennis Professionals, men's professional tennis governing body * American Technical Publishers, employee-owned publishing company * ', a Danish pension * Armenia Tree Project, non ...
and
GMP GMP may refer to: Finance and economics * Gross metropolitan product * Guaranteed maximum price * Guaranteed Minimum Pension Science and technology * GNU Multiple Precision Arithmetic Library, a software library * Granulocyte-macrophage progenit ...
in order to make ADP and
GDP Gross domestic product (GDP) is a monetary measure of the market value of all the final goods and services produced and sold (not resold) in a specific time period by countries. Due to its complex and subjective nature this measure is often ...
, a critical step in the biosynthesis of GTP. Hz2V039 has homology with the baculovirus 19K protein gene ( AcMNPV ORF 96) and is most homologous with GbNV ORF 87. Hz2V068 encodes a zinc-dependent matrix
metalloprotease A metalloproteinase, or metalloprotease, is any protease enzyme whose catalytic mechanism involves a metal. An example is ADAM12 which plays a significant role in the fusion of muscle cells during embryo development, in a process known as myogen ...
(ZnMc_MMP) and is most similar to ''
Acyrthosiphon pisum ''Acyrthosiphon pisum'', commonly known as the pea aphid (and colloquially known as the green dolphin, pea louse, and clover louse), is a sap-sucking insect in the family Aphididae. It feeds on several species of legumes (plant family Fabaceae) w ...
'' MMP. This gene most more closely resembles host genes than viral genes. It likely synthesizes zinc and calcium dependent enzymes to be
proenzyme In biochemistry, a zymogen (), also called a proenzyme (), is an inactive precursor of an enzyme. A zymogen requires a biochemical change (such as a hydrolysis reaction revealing the active site, or changing the configuration to reveal the active ...
s in
connective tissue Connective tissue is one of the four primary types of animal tissue, along with epithelial tissue, muscle tissue, and nervous tissue. It develops from the mesenchyme derived from the mesoderm the middle embryonic germ layer. Connective tiss ...
s. MMPs are important in
cellular differentiation Cellular differentiation is the process in which a stem cell alters from one type to a differentiated one. Usually, the cell changes to a more specialized type. Differentiation happens multiple times during the development of a multicellular ...
,
morphogenesis Morphogenesis (from the Greek ''morphê'' shape and ''genesis'' creation, literally "the generation of form") is the biological process that causes a cell, tissue or organism to develop its shape. It is one of three fundamental aspects of devel ...
, and pericellular
proteolysis Proteolysis is the breakdown of proteins into smaller polypeptides or amino acids. Uncatalysed, the hydrolysis of peptide bonds is extremely slow, taking hundreds of years. Proteolysis is typically catalysed by cellular enzymes called protease ...
of the
extracellular matrix In biology, the extracellular matrix (ECM), also called intercellular matrix, is a three-dimensional network consisting of extracellular macromolecules and minerals, such as collagen, enzymes, glycoproteins and hydroxyapatite that provide stru ...
and other
cell surface molecule Cell adhesion molecules (CAMs) are a subset of cell surface proteins that are involved in the binding of cells with other cells or with the extracellular matrix (ECM), in a process called cell adhesion. In essence, CAMs help cells stick to each ...
s. Hz2V096 is homologous to AcMNPV ORF81 (''ac81'') but is most similar to GbNV ORF14. Its function is unknown, but ''ac81'' is considered a baculovirus core gene Hz2V099 is similar to a prokaryotic
acetylesterase The enzyme acetylesterase () catalyzes the reaction :an acetic ester + H2O \rightleftharpoons an alcohol + acetate This enzyme belongs to the family of hydrolases, specifically those acting on carboxylic ester bonds. The systematic name of thi ...
(Aes), a member of the
esterase An esterase is a hydrolase enzyme that splits esters into an acid and an alcohol in a chemical reaction with water called hydrolysis. A wide range of different esterases exist that differ in their substrate specificity, their protein structure, ...
/
lipase Lipase ( ) is a family of enzymes that catalyzes the hydrolysis of fats. Some lipases display broad substrate scope including esters of cholesterol, phospholipids, and of lipid-soluble vitamins and sphingomyelinases; however, these are usually tr ...
family that plays a role in the control of a
transcriptional activator A transcriptional activator is a protein (transcription factor) that increases transcription of a gene or set of genes. Activators are considered to have ''positive'' control over gene expression, as they function to promote gene transcription and, ...
. Hz2V110 is homologous to
serine/threonine protein kinase A serine/threonine protein kinase () is a kinase enzyme, in particular a protein kinase, that phosphorylates the OH group of the amino-acid residues serine or threonine, which have similar side chains. At least 350 of the 500+ human protei ...
(S_TPK). S_TPK catalyzes phosphorylation of serine and threonine residues, which is important to cellular function regulation, particularly the phosphorylation of protein involved in signal transduction. The combination of Hz2V007, Hz2V023, and Hz2V068 may account for the malformation of infected tissues and the unique pathology of the virus.


References

{{Taxonbar, from=Q96380488 Nudiviridae Insect viral diseases