Desulforudis Audaxviator
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Candidatus In prokaryote nomenclature, ''Candidatus'' (Latin for candidate of Roman office) is used to name prokaryotic phyla that are well characterized but yet-uncultured. Contemporary sequencing approaches, such as 16S sequencing or metagenomics, provide m ...
'' Desulforudis audaxviator" is a
monospecific In biology, a monotypic taxon is a taxonomic group (taxon) that contains only one immediately subordinate taxon. A monotypic species is one that does not include subspecies or smaller, infraspecific taxa. In the case of genera, the term "unispec ...
genus of
bacteria Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of prokaryotic microorganisms. Typically a few micrometr ...
that lives in groundwater at depths from below the Earth's surface.


Etymology

The name comes from a quotation from Jules Verne's novel ''
Journey to the Center of the Earth ''Journey to the Center of the Earth'' (french: Voyage au centre de la Terre), also translated with the variant titles ''A Journey to the Centre of the Earth'' and ''A Journey into the Interior of the Earth'', is a classic science fiction novel ...
,'' where the hero, Professor Lidenbrock, finds a secret inscription in Latin: ''Descende, audax viator, et terrestre centrum attinges'' (Descend, bold traveller, and you will attain the center of the Earth).


Biology

''Desulforudis audaxviator'' is the only bacterium found in water samples obtained underground in the Mponeng
gold mine Gold Mine may refer to: * Gold Mine (board game) *Gold Mine (Long Beach), an arena *"Gold Mine", a song by Joyner Lucas from the 2020 album ''ADHD Attention deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder characteri ...
in South Africa. Approximately four
micrometre The micrometre ( international spelling as used by the International Bureau of Weights and Measures; SI symbol: μm) or micrometer (American spelling), also commonly known as a micron, is a unit of length in the International System of Unit ...
s in length, it survives on chemical food sources derived from the radioactive decay of minerals in the surrounding rock. This makes it one of the few known organisms that does not depend on sunlight for nourishment, and the only species known to be alone in its
ecosystem An ecosystem (or ecological system) consists of all the organisms and the physical environment with which they interact. These biotic and abiotic components are linked together through nutrient cycles and energy flows. Energy enters the syste ...
. It has genes for extracting carbon from dissolved
carbon dioxide Carbon dioxide ( chemical formula ) is a chemical compound made up of molecules that each have one carbon atom covalently double bonded to two oxygen atoms. It is found in the gas state at room temperature. In the air, carbon dioxide is trans ...
and for
nitrogen fixation Nitrogen fixation is a chemical process by which molecular nitrogen (), with a strong triple covalent bond, in the air is converted into ammonia () or related nitrogenous compounds, typically in soil or aquatic systems but also in industry. Atmo ...
. It may also have acquired genes from a species of archaea by
horizontal gene transfer Horizontal gene transfer (HGT) or lateral gene transfer (LGT) is the movement of genetic material between unicellular and/or multicellular organisms other than by the ("vertical") transmission of DNA from parent to offspring (reproduction). H ...
. Analyses of water from the bacteriums' habitat show that the water is very old and has not been diluted by surface water, indicating the bacterium have been isolated from Earth's surface for several million years. As the environment at that depth is so much like the early Earth, it may indicate what types of creatures existed before there was an oxygen atmosphere. Billions of years ago, some of the planet's first bacteria may have thrived in similar conditions. The newly discovered microbes could shed light on the origins of life on Earth. "''Ca.'' D. audaxviator" is a
Gram positive In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. Gram-positive bact ...
sulfate-reducing bacterium. The
genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding g ...
contains an unusual
transposon A transposable element (TE, transposon, or jumping gene) is a nucleic acid sequence in DNA that can change its position within a genome, sometimes creating or reversing mutations and altering the cell's genetic identity and genome size. Tra ...
and possesses many sites of insertion. Its complete intolerance of oxygen suggests long-term isolation. The
hydrocarbon In organic chemistry, a hydrocarbon is an organic compound consisting entirely of hydrogen and carbon. Hydrocarbons are examples of group 14 hydrides. Hydrocarbons are generally colourless and hydrophobic, and their odors are usually weak or ...
s in that environment do not come from living organisms. The source of the
hydrogen Hydrogen is the chemical element with the symbol H and atomic number 1. Hydrogen is the lightest element. At standard conditions hydrogen is a gas of diatomic molecules having the formula . It is colorless, odorless, tasteless, non-toxic ...
needed for their respiration comes from the decomposition of water by radioactive decay of
uranium Uranium is a chemical element with the symbol U and atomic number 92. It is a silvery-grey metal in the actinide series of the periodic table. A uranium atom has 92 protons and 92 electrons, of which 6 are valence electrons. Uranium is weak ...
,
thorium Thorium is a weakly radioactive metallic chemical element with the symbol Th and atomic number 90. Thorium is silvery and tarnishes black when it is exposed to air, forming thorium dioxide; it is moderately soft and malleable and has a high ...
and
potassium Potassium is the chemical element with the symbol K (from Neo-Latin ''kalium'') and atomic number19. Potassium is a silvery-white metal that is soft enough to be cut with a knife with little force. Potassium metal reacts rapidly with atmosph ...
. The radiation allows for the production of sulphur compounds the bacteria can use as a high-energy food source. "''Ca.'' D. audaxviator" lives in a complete absence of organic compounds, light, and oxygen, in temperatures exceeding and a pH of 9.3. The physiology that enables it to live in these extreme conditions is a tribute to its unusually large genome, consisting of 2157 genes instead of the 1500 of its peers. If conditions become unfavorable for normal life, "''Ca.'' D. audaxviator" is able to form a bacterial endospore, safeguarding its DNA from heat, extreme pH, and the lack of water. A 2021 study reported further findings in West
Siberia Siberia ( ; rus, Сибирь, r=Sibir', p=sʲɪˈbʲirʲ, a=Ru-Сибирь.ogg) is an extensive region, geographical region, constituting all of North Asia, from the Ural Mountains in the west to the Pacific Ocean in the east. It has been a ...
as in
Death Valley Death Valley is a desert valley in Eastern California, in the northern Mojave Desert, bordering the Great Basin Desert. During summer, it is the Highest temperature recorded on Earth, hottest place on Earth. Death Valley's Badwater Basin is the ...
, California.


See also

*
List of sequenced archaeal genomes This list of sequenced archaeal genomes contains all the archaea known to have publicly available complete genome sequences that have been assembled, annotated and deposited in public databases. ''Methanococcus jannaschii'' was the first archaeon ...
*
AngloGold Ashanti AngloGold Ashanti Limited is a global gold mining company. It was formed in 2004 by the merger of AngloGold and the Ashanti Goldfields Corporation. It is now a global gold producer with 21 operations on four continents. The company is listed ...
, operator of the Mponeng gold mine *
List of bacterial orders This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) and the phylogeny is based on 16S ...
*
List of bacteria genera This article lists the genera of the bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are ...


Notes


References

* {{Taxonbar, from=Q133548, from2=Q15101985 Peptococcaceae Sulphophiles Lithophiles Monotypic bacteria genera Candidatus taxa