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''Aureoumbra lagunensis'' is a unicellular planktonic marine
microalga Microalgae or microphytes are microscopic scale, microscopic algae invisible to the naked eye. They are phytoplankton typically found in freshwater and marine life, marine systems, living in both the water column and sediment. They are unicellul ...
that belongs in the genus ''
Aureoumbra ''Aureoumbra'' is a genus of algae belonging to the family Sarcinochrysidaceae. Species: *'' Aureoumbra geitleri'' *'' Aureoumbra lagunensis'' References {{Taxonbar, from=Q25367478 Ochrophyta Heterokont genera ...
'' under the class
Pelagophyceae Pelagophycidae is a subclass (biology), class of heterokont algae.It is the sister group of the axodines. Together, they form the class Dictyochophyceae. All known species are marine. They can be single-celled (Coccus, coccoid or flagellate), pa ...
. It is similar in morphology and pigments to '' Aureococcus anophagefferens'' and '' Pelagococcus subviridis''. The cell shape is spherical to subspherical and is 2.5 to 5.0 μm in diameter. It is golden-coloured and is encapsulated with extracellular
polysaccharide Polysaccharides (), or polycarbohydrates, are the most abundant carbohydrates found in food. They are long chain polymeric carbohydrates composed of monosaccharide units bound together by glycosidic linkages. This carbohydrate can react with wa ...
layers and has a single
chloroplast A chloroplast () is a type of membrane-bound organelle known as a plastid that conducts photosynthesis mostly in plant and algal cells. The photosynthetic pigment chlorophyll captures the energy from sunlight, converts it, and stores it in ...
structure with pigments. ''Aureoumbra lagunensis'' thrives in a warm hypersaline environment as the greatest cell density has been found in water with
salinity Salinity () is the saltiness or amount of salt dissolved in a body of water, called saline water (see also soil salinity). It is usually measured in g/L or g/kg (grams of salt per liter/kilogram of water; the latter is dimensionless and equal ...
higher than 40 PSU and with temperatures between . Generally, the density of ''A. lagunensis'' is in the order of 106 cells mL−1, being higher in the summer months with lower abundance during the winter. ''Aureoumbra lagunensis'' causes harmful algal blooms and was the dominant microalga in the 7 year long brown tide (1990 - 1997) that happened in Laguna Madre, Texas. Its dominance over other coexisting phytoplankton is in part associated with its encapsulating mucus layer of exopolymer secretions (EPS) and its ability to revert from vegetative and resting cell forms. The ''A. lagunensis'' blooms cause a substantial increase in light attenuation, which in turn contributes to marine biodiversity loss, particularly phytoplankton communities and
benthic The benthic zone is the ecological region at the lowest level of a body of water such as an ocean, lake, or stream, including the sediment surface and some sub-surface layers. The name comes from ancient Greek, βένθος (bénthos), meaning "t ...
invertebrates. ''A. lagunensis'' thrives in low-light conditions, where it can maintain high growth rates at 150 umol photons m−2 s−1, thus an increase in light attenuation causes a positive feedback which further perpetuates blooms. ''Aureoumbra lagunensis'' nutrient uptake is unlike other common microalgae. It uptakes inorganic nitrogen in the form of
ammonium The ammonium cation is a positively-charged polyatomic ion with the chemical formula or . It is formed by the protonation of ammonia (). Ammonium is also a general name for positively charged or protonated substituted amines and quaternary a ...
(NH4+) and
nitrite The nitrite polyatomic ion, ion has the chemical formula . Nitrite (mostly sodium nitrite) is widely used throughout chemical and pharmaceutical industries. The nitrite anion is a pervasive intermediate in the nitrogen cycle in nature. The name ...
(NO2) and organic nitrogen in the form of urea, but does not utilize
nitrate Nitrate is a polyatomic ion A polyatomic ion, also known as a molecular ion, is a covalent bonded set of two or more atoms, or of a metal complex, that can be considered to behave as a single unit and that has a net charge that is not zer ...
(NO3). It uses environment dissolved organic phosphorus as the sole source to regenerate phosphate for growth.


Nomenclature

The name ''Aureoumbra lagunensis'' is Latin derived, where "''Aureo''" comes from the word ''Aureus'' meaning golden, pertaining to the colour of ''A. lagunensis'' populations; ''umbra'' refers to the reduction in light penetration that occurs when blooms occur, and ''lagunensis'' refers to the lagoon environment, namely Laguna Madre, Texas, from which this organism was first isolated.


Pigment characterization

* Chlorophyll a * Chlorophyll c * Fucoxanthin *
Diatoxanthin Diatoxanthin is a type of xanthophyll Xanthophylls (originally phylloxanthins) are yellow pigments that occur widely in nature and form one of two major divisions of the carotenoid group; the other division is formed by the carotenes. The name ...
*
Diadinoxanthin Diadinoxanthin is a pigment found in phytoplankton. It has the formula C40H54O3. It gives rise to the xanthophylls diatoxanthin and dinoxanthin. Diadinoxanthin is a plastid pigment. Plastid pigments include chlorophylls a and c, fucoxanthin, hete ...
* 19'-butanoyloxyfucoxanthin * β,β-Carotene


Distribution

''Aureoumbra lagunensis'' causes harmful algal blooms, most notably in Laguna Madre, Texas from 1990 to 1997, where it was first isolated. For over 20 years, ''A. lagunensis'' was confined to this bay system in Texas. More recently, small background concentrations of the species have been found in coastal bay regions along the rest of the Mexican Gulf coast, with larger populations found in Florida, Texas, and Mexico. In 2012 and 2013, ''A. lagunensis'' also caused brown tides in the
Indian River Lagoon The Indian River Lagoon is a grouping of three lagoons: the Mosquito Lagoon, the Banana River, and the Indian River, on the Atlantic Coast of Florida; one of the most biodiverse estuaries in the Northern Hemisphere and is home to more than 4,300 ...
and Mosquito Lagoon, in Florida, USA. ''A. lagunensis'' brown tides have expanded as far as the Caribbean Sea into
Guantánamo Bay Guantánamo Bay ( es, Bahía de Guantánamo) is a bay in Guantánamo Province at the southeastern end of Cuba. It is the largest harbor on the south side of the island and it is surrounded by steep hills which create an enclave that is cut off ...
, Cuba in 2013.


The Texas brown tide

''Aureoumbra lagunensis'' cause a bloom in Laguna Madre, Texas for seven years where it maintained densities from 0.5 x 106 cells mL−1 to 5 x 106 cells mL−1. The hypersaline conditions of Laguna Madre (45 – 75 PSU) is thought to be the cause of the bloom which allowed ''A. lagunensis'' to thrive, as they achieve maximal growth at 70 PSU and can continue to grow in environments of 10 – 90 PSU. The development of these hypersaline conditions was due to a period of drought which caused a loss of benthic and planktonic grazers. This effectively reduced the grazing pressure on phytoplankton like ''A. lagunensis''. In December 1990 a large fish die-off occurred upon severe freezing which served to release nutrients like ammonium to further support the phytoplankton population. By October 1997, The Texas Brown Tide was disrupted, after seven years of uninterrupted growth, due to heavy rainfall.


The Florida brown tides

The first brown tide in Florida began during the summer of 2012 and collapsed a few months thereafter, and the second brown tide began in the spring of 2013 and collapsed in mid-summer 2013. During the brown tides in Florida, ''A. lagunensis'' consisted of 98% of the phytoplankton community with abundances greater than 2 x 106 cells/mL. Similar to the causes of the Texas brown tides, the Florida brown tides were proliferated by high salinity, low grazing pressure, high dissolved organic nitrogen and low inorganic nutrients, and competitive advantage over other phytoplankton. However, these brown tides were short-lived compared to that in Texas, lasting no more than a few months.


The Cuba brown tide

In January 2013, ''A. lagunensis'' populations sharply increased in Guantanamo Bay, sparking a brown tide in Cuba. This in turn led to many shutdowns of the plant which supplied freshwater to the US Naval Base in Guantanamo Bay. Similar to the Florida brown tides, this ''A. lagunensis'' bloom was short lived compared to that in Texas, only lasting from January 2013 to November 2013. Unlike the Florida and Texas brown tides, hypersalinity was not found in the Caribbean waters where ''A. lagunensis'' bloomed. In the Texas and Florida brown tides, high primary productivity was always correlated with high ''A. lagunensis'' density, but in Cuba high primary productivity correlated with high ''A. lagunensis'' density only initially. After some time, productivity in Cuba remained high, but the dominant phytoplankton shifted from ''A. lagunensis'' to '' Synechococcus sp.''.


Competitive advantages

''Aureoumbra lagunensis'' has competitive advantages that may allow it to persist in unfavourable marine environments such as low light intensities, nutrient limitations and high temperatures. ''A. lagunensis has'' an encapsulating mucus layer of exopolymer secretions (EPS) and is able to revert from vegetative to resting cell forms in unfavorable conditions.
Allelopathic Allelopathy is a biological phenomenon by which an organism produces one or more biochemicals that influence the germination, growth, survival, and reproduction of other organisms. These biochemicals are known as allelochemicals and can have ben ...
effects have also been observed that can cause cell lysis, reduced growth rates and reduced
photosynthetic efficiency The photosynthetic efficiency is the fraction of light energy converted into chemical energy during photosynthesis in green plants and algae. Photosynthesis can be described by the simplified chemical reaction :6 H2O + 6 CO2 + energy → C6H12O6 + ...
of co-existing phytoplankton. ''A. lagunensis'' experiences low mortality losses via its ability to discourage grazing by zooplankton and filter-feeding mollusks. Positive feedback involved in ''A. lagunensis''’ ability to grow competitively in low-nutrient environments and low light levels and its ability to discourage grazing further contributes to brown tide blooms.


The EPS layer

The adhesive EPS layer surrounding ''A. lagunensis'' reduces grazing by hypotrichous filter-feeding
protozoa Protozoa (singular: protozoan or protozoon; alternative plural: protozoans) are a group of single-celled eukaryotes, either free-living or parasitic, that feed on organic matter such as other microorganisms or organic tissues and debris. Histo ...
ns such as '' Aspidisca sp'' and ''
Euplotes ''Euplotes'' is a genus of ciliates in the subclass Euplotia. Species are widely distributed in marine and freshwater environments, as well as soil and moss. Most members of the genus are free-living, but two species have been recorded as commens ...
'', as marked by these protozoan's reduction in growth rate with increasing levels of EPS coating. It is speculated that the effects on grazing may be caused by the adherence of the exopolymer to cilia on the surface of protozoans thus affecting swimming abilities and clogging feeding apparatus, both of which may decrease grazing efficiency. With increasing
salinity Salinity () is the saltiness or amount of salt dissolved in a body of water, called saline water (see also soil salinity). It is usually measured in g/L or g/kg (grams of salt per liter/kilogram of water; the latter is dimensionless and equal ...
, the EPS layer of ''A. lagunensis'' increases. It has been hypothesized that with the hypersaline conditions of Laguna Madre during the bloom, ''A. lagunensis'' was able to out-compete other organisms due to a reduction in grazing pressure, which allowed it to thrive and further contribute to the Texas Brown Tide. The polysaccharide sheath is hypothesized to protect ''A. lagunensis'' from being digested in the guts of some zooplankton like that of the
copepod Copepods (; meaning "oar-feet") are a group of small crustaceans found in nearly every freshwater and saltwater habitat (ecology), habitat. Some species are planktonic (inhabiting sea waters), some are benthos, benthic (living on the ocean floor) ...
''
Acartia tonsa ''Acartia tonsa'' is a species of marine copepod in the family Acartiidae. Distribution ''Acartia tonsa'' is a species of calanoid copepod that can be found in a large portion of the world's estuaries and areas of upwelling where food concentrat ...
'' as viable cells can be detected in its fecal pellets.


Vegetative and resting cell forms

''Aureoumbra lagunensis'' has vegetative and resting cell forms in response to optimal conditions and environmental stressors respectively. Such a capability allows this organism to tolerate nutrient limitations, temperature fluctuations and light intensity variations. Relative to the vegetative form of ''A. lagunensis'', the resting cell is larger, more round, has fewer and more aggregated plastids, lower chlorophyll A concentrations, decreased respiration rates and growth rates, reduced photosynthetic efficiency, greater vacuolar space and lower RNA:DNA ratio due to a decrease in RNA content but not DNA content. Red accumulation bodies have also been observed in resting cells but not vegetative cells. Such accumulation bodies are associated with increased
sterol Sterol is an organic compound with formula , whose molecule is derived from that of gonane by replacement of a hydrogen atom in position 3 by a hydroxyl group. It is therefore an alcohol of gonane. More generally, any compounds that contain the go ...
concentrations. Vegetative cells are described as irregularly shaped and containing sterols characterized as ( E)-24-propylidenecholesterol, stigmasterol,
sitosterol β-sitosterol (beta-sitosterol) is one of several phytosterols (plant sterols) with chemical structures similar to that of cholesterol. It is a white, waxy powder with a characteristic odor, and is one of the components of the food additive E499. ...
, cholesterol, (24R)-24-propylcholesterol with trace amounts of 24-methylenecholesterol, crinosterol, clerosterol, campesterol, dihydrobrassicasterol, and 24-isopropylcholesterol.


Loss of biodiversity

Brown tides caused by ''A. lagunensis'' lead to substantial light attenuation, a loss in intensity of light travelling to the bottom of water. In the Texas Brown tide, the increase in light attenuation caused a decrease in seagrass beds which was abundant prior to the brown tide. This contributed to a loss in biomass in terms of primary producers and in turn the diversity of benthic invertebrates in Laguna Madre. The benthic phototrophs compete with ''A. lagunensis'' for nutrients, especially those regenerated in sediments, an important source of recycled nutrient in shallow lagoons that host these blooms. As a result, decrease in benthic biomass further contributes to the dispersion of benthic nutrient input to overlying water, fueling bloom development and causing more severe shading of the bottom water which further limits the growth of benthic phototrophs. ''Aureoumbra lagunensis'' favors a low light environment, thus an increase in light attenuation results in an increase in ''Aureoumbra'' populations on surface water which causes more severe shading. ''A. lagunensis'' could discourage grazing of zooplankton and filter-feeding mollusks to increase the chance of its survival. Brown tide blooms caused by ''A. lagunensis'' decrease the grazing activity, growth and egg release rates of the initially abundant mesozooplankton ''Acartia tonsa''. The dominant clam, ''
Mulinia lateralis ''Mulinia lateralis'', the dwarf surf clam or coot clam, is a species of small saltwater clam, a bivalve mollusc in the family Mactridae. It occurs in the western Atlantic Ocean and the Caribbean Sea. Description ''Mulinia lateralis'' has a some ...
'', also experienced population declines during the Texas brown tide bloom, however, this decrease in abundance was initiated before the beginning of the bloom. In addition to ''Mulinia lateralis,'' the dominant polychaete, '' Streblospio Benedict'', an important grazer of phytoplankton, also decreased in abundance.


Nitrogen uptake

''Aureoumbra lagunensis'' are not able to use nitrate (NO3) as a sole source of nitrogen and instead utilize inorganic nitrogen in the form of ammonium (NH4+) and
nitrite The nitrite polyatomic ion, ion has the chemical formula . Nitrite (mostly sodium nitrite) is widely used throughout chemical and pharmaceutical industries. The nitrite anion is a pervasive intermediate in the nitrogen cycle in nature. The name ...
(NO2) and organic nitrogen in the form of urea. ''Aureoumbra lagunensis'' is found in high abundance where there is high organic to inorganic nitrogen ratios but growth rates of ''A. lagunensis'' are greater when grown with ammonium than urea. Collectively, ammonium and urea make up more than 90% of nitrogen uptake in bloom populations. ''A. lagunensis'' has higher affinity for and greater productivity with low levels of organic and inorganic nitrogen as opposed to high levels such that they are unable to increase growth rates in high ammonium concentrations (≈40 μM) which can ultimately cause them to be out-competed by ''Synechococcus'' species which thrive in such conditions. Low levels of ammonium (≈10uM) has been shown to enhance growth rates of ''A. lagunensis'' to a greater degree than
phycoerythrin Phycoerythrin (PE) is a red protein-pigment complex from the light-harvesting phycobiliprotein family, present in cyanobacteria, red algae and cryptophytes, accessory to the main chlorophyll pigments responsible for photosynthesis.The red pigmen ...
-containing
cyanobacteria Cyanobacteria (), also known as Cyanophyta, are a phylum of gram-negative bacteria that obtain energy via photosynthesis. The name ''cyanobacteria'' refers to their color (), which similarly forms the basis of cyanobacteria's common name, blu ...
. ''Aureoumbra lagunensis'' is more productive when utilizing NH4+ or NO2 than with NO3. ''A. lagunensis''’ inability to use NO3 as the sole source of nitrogen is maintained when samples are supplied with iron and other trace metals. When nitrate is in excess the effects on ''A. lagunensis'' can be detrimental as it has been found that phycocyanin-containing
cyanobacteria Cyanobacteria (), also known as Cyanophyta, are a phylum of gram-negative bacteria that obtain energy via photosynthesis. The name ''cyanobacteria'' refers to their color (), which similarly forms the basis of cyanobacteria's common name, blu ...
can thrive in such environments causing for an increase in its abundance and a decline in ''A. lagunensis'' abundance.
Baffin Bay, Texas Baffin Bay is a bay in South Texas, an inlet of the larger Laguna Madre. Located near the Gulf of Mexico, Baffin Bay forms part of the boundary between Kenedy County and Kleberg County. Etymology The history of the bay name is unclear. The mos ...
has seasonally and yearly stable levels of organic and inorganic nitrogen; however, when the large fish die-off occurred in 1990 due to severe freezing, more urea and ammonium became available to ''A. lagunensis'', thus potentially initiating the brown tide.


Phosphorus uptake

''Aureoumbra lagunensis'' blooms at a low phosphorus concentration. It has the ability to regenerate phosphate from environmental dissolved organic phosphorus (DOP), a significant part of marine total dissolved phosphorus pool. It could use DOP as the sole source of phosphate for growth as a result. The mechanisms of phosphate acquisition in ''A. lagunensis'' remain unconfirmed, but it is hypothesized that ''A. lagunensis'' uses a common phosphorus-limitation specific protein,
alkaline phosphatase The enzyme alkaline phosphatase (EC 3.1.3.1, alkaline phosphomonoesterase; phosphomonoesterase; glycerophosphatase; alkaline phosphohydrolase; alkaline phenyl phosphatase; orthophosphoric-monoester phosphohydrolase (alkaline optimum), systematic ...
, to
dephosphorylate In biochemistry, dephosphorylation is the removal of a phosphate (PO43−) group from an organic compound by hydrolysis. It is a reversible post-translational modification. Dephosphorylation and its counterpart, phosphorylation, activate and deact ...
DOP compounds to alleviate the low phosphate bioavailability. High alkaline phosphatase activity accompanied with very low dissolved inorganic phosphorus concentration were measured in the ''A. lagunensis'' populations in the Texas Brown Tide at Laguna Madre. ''Aureoumbra lagunensis'' is capable of growing under a wide range of N:P ratios, but forms dense blooms when the water column N:P ratio increases to high levels (≈140). In cultures, ''A.lagunensis'' have a C:P ratio greater than 2000 when grown under severe phosphorus limiting environment.


Chloroplast genome

The chloroplast genome is non-circular. Strain CCMP1507 has a chloroplast genome size of 94,346 bp, encoding 110 proteins and containing 10 tandem repeats, 8 of which are adjacent to photosynthetic and energy production genes. The genome lacks large inverted repeats commonly found in chloroplast. Although ''A. lagunensis'' is similar to ''A. anophagefferens'', it contains five chloroplast genes '','' ' and light independent chlorophyll biosynthesis genes ''chlL, chlN,'' and ''chlB'' which are not present in ''A. anophagefferens’'' chloroplast genome. It is speculated that the presence of the light independent genes for chlorophyll biosynthesis is what allows ''A.lagunensis'' to persist in low light intensities.


References

{{Taxonbar, from=Q60743202 Ochrophyta Ochrophyte species Protists described in 1997