Ab Initio Calculation
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''Ab initio'' quantum chemistry methods are computational chemistry methods based on quantum chemistry. The term was first used in quantum chemistry by
Robert Parr Robert Ghormley Parr (September 22, 1921 – March 27, 2017) was an American theoretical chemist who was a Professor of Chemistry at the University of North Carolina at Chapel Hill. Career Parr received an A. B. degree ''magna cum laude'' ...
and coworkers, including David Craig in a semiempirical study on the excited states of benzene. The background is described by Parr. ''Ab initio'' means "from first principles" or "from the beginning", implying that the only inputs into an ''ab initio'' calculation are physical constants. ''Ab initio'' quantum chemistry methods attempt to solve the electronic
Schrödinger equation The Schrödinger equation is a linear partial differential equation that governs the wave function of a quantum-mechanical system. It is a key result in quantum mechanics, and its discovery was a significant landmark in the development of th ...
given the positions of the nuclei and the number of electrons in order to yield useful information such as electron densities, energies and other properties of the system. The ability to run these calculations has enabled theoretical chemists to solve a range of problems and their importance is highlighted by the awarding of the Nobel prize to
John Pople Sir John Anthony Pople (31 October 1925 – 15 March 2004) was a British theoretical chemist who was awarded the Nobel Prize in Chemistry with Walter Kohn in 1998 for his development of computational methods in quantum chemistry. Early ...
and
Walter Kohn Walter Kohn (; March 9, 1923 – April 19, 2016) was an Austrian-American theoretical physicist and theoretical chemist. He was awarded, with John Pople, the Nobel Prize in Chemistry in 1998. The award recognized their contributions to the unde ...
.


Accuracy and scaling

''Ab initio'' electronic structure methods aim to calculate the many electron function which is the solution of the non-relativistic electronic
Schrödinger equation The Schrödinger equation is a linear partial differential equation that governs the wave function of a quantum-mechanical system. It is a key result in quantum mechanics, and its discovery was a significant landmark in the development of th ...
(in the
Born–Oppenheimer approximation In quantum chemistry and molecular physics, the Born–Oppenheimer (BO) approximation is the best-known mathematical approximation in molecular dynamics. Specifically, it is the assumption that the wave functions of atomic nuclei and elect ...
). The many electron function is generally a linear combination of many simpler electron functions with the dominant function being the Hartree-Fock function. Each of these simple functions are then approximated using only one-electron functions. The one-electron functions are then expanded as a linear combination of a finite set of basis functions. This approach has the advantage that it can be made to converge to the exact solution, when the basis set tends toward the limit of a complete set and where all possible configurations are included (called " Full CI"). However this convergence to the limit is computationally very demanding and most calculations are far from the limit. Nevertheless important conclusions have been made from these more limited classifications. One needs to consider the computational cost of ''ab initio'' methods when determining whether they are appropriate for the problem at hand. When compared to much less accurate approaches, such as
molecular mechanics Molecular mechanics uses classical mechanics to model molecular systems. The Born–Oppenheimer approximation is assumed valid and the potential energy of all systems is calculated as a function of the nuclear coordinates using Force field (chemi ...
, ''ab initio'' methods often take larger amounts of computer time, memory, and disk space, though, with modern advances in computer science and technology such considerations are becoming less of an issue. The Hartree-Fock (HF) method scales nominally as ''N''4 (''N'' being a relative measure of the system size, not the number of basis functions) – e.g., if one doubles the number of electrons and the number of basis functions (double the system size), the calculation will take 16 (24) times as long per iteration. However, in practice it can scale closer to ''N''3 as the program can identify zero and extremely small integrals and neglect them. Correlated calculations scale less favorably, though their accuracy is usually greater, which is the trade off one needs to consider. One popular method is Møller–Plesset perturbation theory (MP). To second order (MP2), MP scales as ''N''4. To third order (MP3) MP scales as ''N''6. To fourth order (MP4) MP scales as ''N''7. Another method,
coupled cluster Coupled cluster (CC) is a numerical technique used for describing many-body systems. Its most common use is as one of several post-Hartree–Fock ab initio quantum chemistry methods in the field of computational chemistry, but it is also used in ...
with singles and doubles (CCSD), scales as ''N''6 and extensions, CCSD(T) and CR-CC(2,3), scale as ''N''6 with one noniterative step which scales as ''N''7.
Hybrid Hybrid may refer to: Science * Hybrid (biology), an offspring resulting from cross-breeding ** Hybrid grape, grape varieties produced by cross-breeding two ''Vitis'' species ** Hybridity, the property of a hybrid plant which is a union of two dif ...
Density functional theory Density-functional theory (DFT) is a computational quantum mechanical modelling method used in physics, chemistry and materials science to investigate the electronic structure (or nuclear structure) (principally the ground state) of many-body ...
(DFT) methods using functionals which include Hartree–Fock exchange scale in a similar manner to Hartree–Fock but with a larger proportionality term and are thus more expensive than an equivalent Hartree–Fock calculation. Local DFT methods that do not include Hartree–Fock exchange can scale better than Hartree–Fock.


Linear scaling approaches

The problem of computational expense can be alleviated through simplification schemes. In the ''density fitting'' scheme, the four-index
integral In mathematics, an integral assigns numbers to functions in a way that describes displacement, area, volume, and other concepts that arise by combining infinitesimal data. The process of finding integrals is called integration. Along wit ...
s used to describe the interaction between electron pairs are reduced to simpler two- or three-index integrals, by treating the charge densities they contain in a simplified way. This reduces the scaling with respect to basis set size. Methods employing this scheme are denoted by the prefix "df-", for example the density fitting MP2 is df-MP2 (many authors use lower-case to prevent confusion with DFT). In the ''local approximation'', the molecular orbitals are first localized by a unitary rotation in the orbital space (which leaves the reference wave function invariant, i.e., not an approximation) and subsequently interactions of distant pairs of localized orbitals are neglected in the correlation calculation. This sharply reduces the scaling with molecular size, a major problem in the treatment of biologically-sized molecules. Methods employing this scheme are denoted by the prefix "L", e.g. LMP2. Both schemes can be employed together, as in the df-LMP2 and df-LCCSD(T0) methods. In fact, df-LMP2 calculations are faster than df-Hartree–Fock calculations and thus are feasible in nearly all situations in which also DFT is.


Classes of methods

The most popular classes of ''ab initio'' electronic structure methods:


Hartree–Fock methods

* Hartree–Fock (HF) *
Restricted open-shell Hartree–Fock Restricted open-shell Hartree–Fock (ROHF) is a variant of Hartree–Fock method for open shell molecules. It uses doubly occupied molecular orbitals as far as possible and then singly occupied orbitals for the unpaired electrons. This is the si ...
(ROHF) *
Unrestricted Hartree–Fock Unrestricted Hartree–Fock (UHF) theory is the most common molecular orbital method for open shell molecules where the number of electrons of each spin are not equal. While restricted Hartree–Fock theory uses a single molecular orbital ...
(UHF)


Post-Hartree–Fock methods

* Møller–Plesset perturbation theory (MP''n'') *
Configuration interaction Configuration interaction (CI) is a post-Hartree–Fock linear variational method for solving the nonrelativistic Schrödinger equation within the Born–Oppenheimer approximation for a quantum chemical multi-electron system. Mathematical ...
(CI) *
Coupled cluster Coupled cluster (CC) is a numerical technique used for describing many-body systems. Its most common use is as one of several post-Hartree–Fock ab initio quantum chemistry methods in the field of computational chemistry, but it is also used in ...
(CC) *
Quadratic configuration interaction Quadratic configuration interaction (QCI) is an extension of configuration interaction that corrects for size-consistency errors in single and double excitation CI methods (CISD). Size-consistency means that the energy of two non-interacting (i. ...
(QCI) *
Quantum chemistry composite methods Quantum chemistry composite methods (also referred to as thermochemical recipes) are computational chemistry methods that aim for high accuracy by combining the results of several calculations. They combine methods with a high level of theory and ...
* Sign Learning Kink-based (SiLK) Quantum Monte Carlo


Multi-reference methods

*
Multi-configurational self-consistent field Multi-configurational self-consistent field (MCSCF) is a method in quantum chemistry used to generate qualitatively correct reference states of molecules in cases where Hartree–Fock and density functional theory are not adequate (e.g., for mole ...
(MCSCF including CASSCF and RASSCF) * Multi-reference configuration interaction (MRCI) *
n-electron valence state perturbation theory In quantum chemistry, ''n''-electron valence state perturbation theory (NEVPT) is a perturbative treatment applicable to multireference CASCI-type wavefunctions. It can be considered as a generalization of the well-known second-order Møller–P ...
(NEVPT) *
Complete active space perturbation theory Complete active space perturbation theory (CASPTn) is a multireference electron correlation method for computational investigation of molecular systems, especially for those with heavy atoms such as transition metals, lanthanides, and actinides. I ...
(CASPT''n'') * State universal multi-reference coupled-cluster theory (SUMR-CC)


Methods in detail


Hartree–Fock and post-Hartree–Fock methods

The simplest type of ''
ab initio ''Ab initio'' ( ) is a Latin term meaning "from the beginning" and is derived from the Latin ''ab'' ("from") + ''initio'', ablative singular of ''initium'' ("beginning"). Etymology Circa 1600, from Latin, literally "from the beginning", from ab ...
'' electronic structure calculation is the Hartree–Fock (HF) scheme, in which the instantaneous Coulombic electron-electron repulsion is not specifically taken into account. Only its average effect (mean field) is included in the calculation. This is a variational procedure; therefore, the obtained approximate energies, expressed in terms of the system's
wave function A wave function in quantum physics is a mathematical description of the quantum state of an isolated quantum system. The wave function is a complex-valued probability amplitude, and the probabilities for the possible results of measurements ...
, are always equal to or greater than the exact energy, and tend to a limiting value called the Hartree–Fock limit as the size of the basis is increased. Many types of calculations begin with a Hartree–Fock calculation and subsequently correct for electron-electron repulsion, referred to also as
electronic correlation Electronic correlation is the interaction between electrons in the electronic structure of a quantum system. The correlation energy is a measure of how much the movement of one electron is influenced by the presence of all other electrons. Atom ...
. Møller–Plesset perturbation theory (MP''n'') and
coupled cluster Coupled cluster (CC) is a numerical technique used for describing many-body systems. Its most common use is as one of several post-Hartree–Fock ab initio quantum chemistry methods in the field of computational chemistry, but it is also used in ...
theory (CC) are examples of these
post-Hartree–Fock In computational chemistry, post-Hartree–Fock methods are the set of methods developed to improve on the Hartree–Fock (HF), or self-consistent field (SCF) method. They add electron correlation which is a more accurate way of including the rep ...
methods. In some cases, particularly for bond breaking processes, the Hartree–Fock method is inadequate and this single-determinant reference function is not a good basis for post-Hartree–Fock methods. It is then necessary to start with a wave function that includes more than one determinant such as
multi-configurational self-consistent field Multi-configurational self-consistent field (MCSCF) is a method in quantum chemistry used to generate qualitatively correct reference states of molecules in cases where Hartree–Fock and density functional theory are not adequate (e.g., for mole ...
(MCSCF) and methods have been developed that use these multi-determinant references for improvements. However, if one uses coupled cluster methods such as CCSDT, CCSDt, CR-CC(2,3), or CC(t;3) then single-bond breaking using the single determinant HF reference is feasible. For an accurate description of double bond breaking, methods such as CCSDTQ, CCSDTq, CCSDtq, CR-CC(2,4), or CC(tq;3,4) also make use of the single determinant HF reference, and do not require one to use multi-reference methods. ;Example: Is the bonding situation in
disilyne Disilyne is a silicon hydride with the formula . Several isomers are possible, but none are sufficiently stable to be of practical value. Substituted disilynes contain a formal silicon–silicon triple bond and as such are sometimes written R2Si ...
Si2H2 the same as in acetylene (C2H2)? A series of ''ab initio'' studies of Si2H2 is an example of how ''ab initio'' computational chemistry can predict new structures that are subsequently confirmed by experiment. They go back over 20 years, and most of the main conclusions were reached by 1995. The methods used were mostly
post-Hartree–Fock In computational chemistry, post-Hartree–Fock methods are the set of methods developed to improve on the Hartree–Fock (HF), or self-consistent field (SCF) method. They add electron correlation which is a more accurate way of including the rep ...
, particularly
configuration interaction Configuration interaction (CI) is a post-Hartree–Fock linear variational method for solving the nonrelativistic Schrödinger equation within the Born–Oppenheimer approximation for a quantum chemical multi-electron system. Mathematical ...
(CI) and
coupled cluster Coupled cluster (CC) is a numerical technique used for describing many-body systems. Its most common use is as one of several post-Hartree–Fock ab initio quantum chemistry methods in the field of computational chemistry, but it is also used in ...
(CC). Initially the question was whether
disilyne Disilyne is a silicon hydride with the formula . Several isomers are possible, but none are sufficiently stable to be of practical value. Substituted disilynes contain a formal silicon–silicon triple bond and as such are sometimes written R2Si ...
, Si2H2 had the same structure as
ethyne Acetylene ( systematic name: ethyne) is the chemical compound with the formula and structure . It is a hydrocarbon and the simplest alkyne. This colorless gas is widely used as a fuel and a chemical building block. It is unstable in its pure ...
(acetylene), C2H2. In early studies, by Binkley and Lischka and Kohler, it became clear that linear Si2H2 was a transition structure between two equivalent trans-bent structures and that the ground state was predicted to be a four-membered ring bent in a 'butterfly' structure with hydrogen atoms bridged between the two silicon atoms. Interest then moved to look at whether structures equivalent to vinylidene (Si=SiH2) existed. This structure is predicted to be a local minimum, i.e. an isomer of Si2H2, lying higher in energy than the ground state but below the energy of the trans-bent isomer. Then a new isomer with an unusual structure was predicted by Brenda Colegrove in
Henry F. Schaefer III Henry Frederick "Fritz" Schaefer III (born June 8, 1944) is a computational and theoretical chemist. He is one of the most highly cited chemists in the world, with a Thomson Reuters H-Index of 121 as of 2020. He is the Graham Perdue Professor of C ...
's group. It requires
post-Hartree–Fock In computational chemistry, post-Hartree–Fock methods are the set of methods developed to improve on the Hartree–Fock (HF), or self-consistent field (SCF) method. They add electron correlation which is a more accurate way of including the rep ...
methods to obtain a local minimum for this structure. It does not exist on the Hartree–Fock energy hypersurface. The new isomer is a planar structure with one bridging hydrogen atom and one terminal hydrogen atom, cis to the bridging atom. Its energy is above the ground state but below that of the other isomers. Similar results were later obtained for Ge2H2. Al2H2 and Ga2H2 have exactly the same isomers, in spite of having two electrons less than the Group 14 molecules. The only difference is that the four-membered ring ground state is planar and not bent. The cis-mono-bridged and vinylidene-like isomers are present. Experimental work on these molecules is not easy, but matrix isolation spectroscopy of the products of the reaction of hydrogen atoms and silicon and aluminium surfaces has found the ground state ring structures and the cis-mono-bridged structures for Si2H2 and Al2H2. Theoretical predictions of the vibrational frequencies were crucial in understanding the experimental observations of the spectra of a mixture of compounds. This may appear to be an obscure area of chemistry, but the differences between carbon and silicon chemistry is always a lively question, as are the differences between group 13 and group 14 (mainly the B and C differences). The silicon and germanium compounds were the subject of a Journal of Chemical Education article.


Valence bond methods

Valence bond (VB) methods are generally ''ab initio'' although some semi-empirical versions have been proposed. Current VB approaches are:- *
Generalized valence bond The generalized valence bond (GVB) is a method in valence bond theory that uses flexible orbitals in the general way used by modern valence bond theory. The method was developed by the group of William A. Goddard, III around 1970. Theory The gene ...
(GVB) *
Modern valence bond theory Modern valence bond theory is the application of valence bond theory VBT with computer programs that are competitive in accuracy and economy with programs for the Hartree–Fock or post-Hartree-Fock methods. The latter methods dominated quantu ...
(MVBT)


Quantum Monte Carlo methods

A method that avoids making the variational overestimation of HF in the first place is
Quantum Monte Carlo Quantum Monte Carlo encompasses a large family of computational methods whose common aim is the study of complex quantum systems. One of the major goals of these approaches is to provide a reliable solution (or an accurate approximation) of th ...
(QMC), in its variational, diffusion, and Green's function forms. These methods work with an explicitly correlated wave function and evaluate integrals numerically using a
Monte Carlo Monte Carlo (; ; french: Monte-Carlo , or colloquially ''Monte-Carl'' ; lij, Munte Carlu ; ) is officially an administrative area of the Principality of Monaco, specifically the ward of Monte Carlo/Spélugues, where the Monte Carlo Casino is ...
integration. Such calculations can be very time-consuming. The accuracy of QMC depends strongly on the initial guess of many-body wave-functions and the form of the many-body wave-function. One simple choice is Slater-Jastrow wave-function in which the local correlations are treated with the Jastrow factor. Sign Learning Kink-based (SiLK) Quantum Monte Carlo
website
: The Sign Learning Kink (SiLK) based Quantum Monte Carlo (QMC) method is based on Feynman's path integral formulation of quantum mechanics, and can reduce the minus sign problem when calculating energies in atomic and molecular systems.


See also

*
Density functional theory Density-functional theory (DFT) is a computational quantum mechanical modelling method used in physics, chemistry and materials science to investigate the electronic structure (or nuclear structure) (principally the ground state) of many-body ...
*
Car–Parrinello molecular dynamics Car–Parrinello molecular dynamics or CPMD refers to either a method used in molecular dynamics (also known as the Car–Parrinello method) or the computational chemistry software package used to implement this method. The CPMD method is one of th ...
*
Quantum chemistry computer programs Quantum chemistry computer programs are used in computational chemistry to implement the methods of quantum chemistry. Most include the Hartree–Fock (HF) and some post-Hartree–Fock methods. They may also include density functional theory (DF ...
– see columns for Hartree–Fock and post-Hartree–Fock methods


References

{{Reflist Computational chemistry Theoretical chemistry