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Substring
In formal language theory and computer science, a substring is a contiguous sequence of characters within a string. For instance, "''the best of''" is a substring of "''It was the best of times''". In contrast, "''Itwastimes''" is a subsequence of "''It was the best of times''", but not a substring. Prefixes and suffixes are special cases of substrings. A prefix of a string S is a substring of S that occurs at the beginning of S; likewise, a suffix of a string S is a substring that occurs at the end of S. The substrings of the string "''apple''" would be: "''a''", "''ap''", "''app''", "''appl''", "''apple''", "''p''", "''pp''", "''ppl''", "''pple''", "''pl''", "''ple''", "''l''", "''le''" "''e''", "" (note the empty string at the end). Substring A string u is a substring (or factor) of a string t if there exists two strings p and s such that t = pus. In particular, the empty string is a substring of every string. Example: The string u=ana is equal to substrings (and subse ...
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Suffix Automaton
In computer science, a suffix automaton is an efficient data structure for representing the substring index of a given string which allows the storage, processing, and retrieval of compressed information about all its substrings. The suffix automaton of a string S is the smallest directed acyclic graph with a dedicated initial vertex and a set of "final" vertices, such that paths from the initial vertex to final vertices represent the suffixes of the string. In terms of automata theory, a suffix automaton is the minimal partial deterministic finite automaton that recognizes the set of suffixes of a given string S=s_1 s_2 \dots s_n. The state graph of a suffix automaton is called a directed acyclic word graph (DAWG), a term that is also sometimes used for any deterministic acyclic finite state automaton. Suffix automata were introduced in 1983 by a group of scientists from the University of Denver and the University of Colorado Boulder. They suggested a linear time online algo ...
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Longest Common Substring Problem
In computer science, the longest common substring problem is to find a longest string that is a substring of two or more strings. The problem may have multiple solutions. Applications include data deduplication and plagiarism detection. Examples The picture shows two strings where the problem has multiple solutions. Although the substring occurrences always overlap, no longer common substring can be obtained by 'uniting' them. The strings "ABABC", "BABCA", and "ABCBA" have only one longest common substring, viz. "ABC" of length 3. Other common substrings are "A", "AB", "B", "BA", "BC" and "C". ABABC , , , BABCA , , , ABCBA Problem definition Given two strings, S of length m and T of length n, find a longest string which is substring of both S and T. A generalization is the k-common substring problem. Given the set of strings S = \, where , S_i, =n_i and \Sigma n_i = N. Find for each 2 \leq k \leq K, a longest string which occurs as substring of at leas ...
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Substring
In formal language theory and computer science, a substring is a contiguous sequence of characters within a string. For instance, "''the best of''" is a substring of "''It was the best of times''". In contrast, "''Itwastimes''" is a subsequence of "''It was the best of times''", but not a substring. Prefixes and suffixes are special cases of substrings. A prefix of a string S is a substring of S that occurs at the beginning of S; likewise, a suffix of a string S is a substring that occurs at the end of S. The substrings of the string "''apple''" would be: "''a''", "''ap''", "''app''", "''appl''", "''apple''", "''p''", "''pp''", "''ppl''", "''pple''", "''pl''", "''ple''", "''l''", "''le''" "''e''", "" (note the empty string at the end). Substring A string u is a substring (or factor) of a string t if there exists two strings p and s such that t = pus. In particular, the empty string is a substring of every string. Example: The string u=ana is equal to substrings (and subse ...
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Substring Index
In computer science, a substring index is a data structure which gives substring search in a text or text collection in sublinear time. If you have a document S of length n, or a set of documents D=\ of total length n, you can locate all occurrences of a pattern P in o(n) time. (See Big O notation.) The phrase full-text index is also often used for an index of all substrings of a text. But is ambiguous, as it is also used for regular word indexes such as inverted files and document retrieval. See full text search. Substring indexes include: * Suffix tree * Suffix array * N-gram index, an inverted file for all N-grams of the text * Compressed suffix arrayR. Grossi and J. S. VitterCompressed Suffix Arrays and Suffix Trees, with Applications to Text Indexing and String Matching ''SIAM Journal on Computing,'' 35(2), 2005, 378-407. * FM-index * LZ-index References

{{reflist Algorithms on strings String data structures Database index techniques Substring indices, ...
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String (computer Science)
In computer programming, a string is traditionally a sequence of characters, either as a literal constant or as some kind of variable. The latter may allow its elements to be mutated and the length changed, or it may be fixed (after creation). A string is generally considered as a data type and is often implemented as an array data structure of bytes (or words) that stores a sequence of elements, typically characters, using some character encoding. ''String'' may also denote more general arrays or other sequence (or list) data types and structures. Depending on the programming language and precise data type used, a variable declared to be a string may either cause storage in memory to be statically allocated for a predetermined maximum length or employ dynamic allocation to allow it to hold a variable number of elements. When a string appears literally in source code, it is known as a string literal or an anonymous string. In formal languages, which are used in mathematical ...
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Suffix Array
In computer science, a suffix array is a sorted array of all suffixes of a string. It is a data structure used in, among others, full-text indices, data-compression algorithms, and the field of bibliometrics. Suffix arrays were introduced by as a simple, space efficient alternative to suffix trees. They had independently been discovered by Gaston Gonnet in 1987 under the name ''PAT array'' . gave the first in-place \mathcal(n) time suffix array construction algorithm that is optimal both in time and space, where ''in-place'' means that the algorithm only needs \mathcal(1) additional space beyond the input string and the output suffix array. Enhanced suffix arrays (ESAs) are suffix arrays with additional tables that reproduce the full functionality of suffix trees preserving the same time and memory complexity. The suffix array for a subset of all suffixes of a string is called sparse suffix array. Multiple probabilistic algorithms have been developed to minimize the additiona ...
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Suffix Tree
In computer science, a suffix tree (also called PAT tree or, in an earlier form, position tree) is a compressed trie containing all the suffixes of the given text as their keys and positions in the text as their values. Suffix trees allow particularly fast implementations of many important string operations. The construction of such a tree for the string S takes time and space linear in the length of S. Once constructed, several operations can be performed quickly, for instance locating a substring in S, locating a substring if a certain number of mistakes are allowed, locating matches for a regular expression pattern etc. Suffix trees also provide one of the first linear-time solutions for the longest common substring problem. These speedups come at a cost: storing a string's suffix tree typically requires significantly more space than storing the string itself. History The concept was first introduced by . Rather than the suffix S ..n/math>, Weiner stored in his trie the ''pref ...
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Subsequence
In mathematics, a subsequence of a given sequence is a sequence that can be derived from the given sequence by deleting some or no elements without changing the order of the remaining elements. For example, the sequence \langle A,B,D \rangle is a subsequence of \langle A,B,C,D,E,F \rangle obtained after removal of elements C, E, and F. The relation of one sequence being the subsequence of another is a preorder. Subsequences can contain consecutive elements which were not consecutive in the original sequence. A subsequence which consists of a consecutive run of elements from the original sequence, such as \langle B,C,D \rangle, from \langle A,B,C,D,E,F \rangle, is a substring. The substring is a refinement of the subsequence. The list of all subsequences for the word "apple" would be "''a''", "''ap''", "''al''", "''ae''", "''app''", "''apl''", "''ape''", "''ale''", "''appl''", "''appe''", "''aple''", "''apple''", "''p''", "''pp''", "''pl''", "''pe''", "''ppl''", "''ppe''", "''ple' ...
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Suffix
In linguistics, a suffix is an affix which is placed after the stem of a word. Common examples are case endings, which indicate the grammatical case of nouns, adjectives, and verb endings, which form the conjugation of verbs. Suffixes can carry grammatical information (inflectional suffixes) or lexical information ( derivational/lexical suffixes'').'' An inflectional suffix or a grammatical suffix. Such inflection changes the grammatical properties of a word within its syntactic category. For derivational suffixes, they can be divided into two categories: class-changing derivation and class-maintaining derivation. Particularly in the study of Semitic languages, suffixes are called affirmatives, as they can alter the form of the words. In Indo-European studies, a distinction is made between suffixes and endings (see Proto-Indo-European root). Suffixes can carry grammatical information or lexical information. A word-final segment that is somewhere between a free morpheme and a b ...
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String Searching Algorithm
In computer science, string-searching algorithms, sometimes called string-matching algorithms, are an important class of string algorithms that try to find a place where one or several strings (also called patterns) are found within a larger string or text. A basic example of string searching is when the pattern and the searched text are arrays of elements of an alphabet (finite set) Σ. Σ may be a human language alphabet, for example, the letters ''A'' through ''Z'' and other applications may use a ''binary alphabet'' (Σ = ) or a ''DNA alphabet'' (Σ = ) in bioinformatics. In practice, the method of feasible string-search algorithm may be affected by the string encoding. In particular, if a variable-width encoding is in use, then it may be slower to find the ''N''th character, perhaps requiring time proportional to ''N''. This may significantly slow some search algorithms. One of many possible solutions is to search for the sequence of code units instead, but doing so may produ ...
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Prefix
A prefix is an affix which is placed before the Word stem, stem of a word. Adding it to the beginning of one word changes it into another word. For example, when the prefix ''un-'' is added to the word ''happy'', it creates the word ''unhappy''. Particularly in the study of languages, a prefix is also called a preformative, because it alters the form of the words to which it is affixed. Prefixes, like other affixes, can be either inflectional, creating a new form of the word with the same basic meaning and same part of speech, lexical category (but playing a different role in the sentence), or Morphological derivation, derivational, creating a new word with a new semantics, semantic meaning and sometimes also a different Part of speech, lexical category. Prefixes, like all other affixes, are usually Bound and unbound morphemes, bound morphemes. In English language, English, there are no inflectional prefixes; English uses suffixes instead for that purpose. The word ''prefix'' ...
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Empty String
In formal language theory, the empty string, or empty word, is the unique string of length zero. Formal theory Formally, a string is a finite, ordered sequence of characters such as letters, digits or spaces. The empty string is the special case where the sequence has length zero, so there are no symbols in the string. There is only one empty string, because two strings are only different if they have different lengths or a different sequence of symbols. In formal treatments, the empty string is denoted with ε or sometimes Λ or λ. The empty string should not be confused with the empty language ∅, which is a formal language (i.e. a set of strings) that contains no strings, not even the empty string. The empty string has several properties: * , ε, = 0. Its string length is zero. * ε ⋅ s = s ⋅ ε = s. The empty string is the identity element of the concatenation operation. The set of all strings forms a free monoid with respect to ⋅ and ε. * εR = ε. Reversal o ...
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