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Onion Yellow Dwarf Virus
''Onion yellow dwarf virus'' (OYDV) is a plant virus in the genus ''Potyvirus'' that has been identified worldwide and mainly infects species of '' Allium'' such as onion, garlic, and leek. The virus causes mild to severe leaf malformation, and bulb reduction up to sixty percent has been observed in garlic. Genome The full genome of OYDV is around 10,538 nucleotides long and encodes a polyprotein of 3,403 amino acids. Its P3 gene is longer than those of other known Potyviruses. OYDV is the first potyvirus found which has natural deletion mutants lacking the N-terminal The N-terminus (also known as the amino-terminus, NH2-terminus, N-terminal end or amine-terminus) is the start of a protein or polypeptide, referring to the free amine group (-NH2) located at the end of a polypeptide. Within a peptide, the ami ... region of helper-component proteinase (HC-Pro). The mutant isolates are common. Garlic plants grown commercially are generally co-infected with both the no ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Allium Cepa
An onion (''Allium cepa'' L., from Latin ''cepa'' meaning "onion"), also known as the bulb onion or common onion, is a vegetable that is the most widely cultivated species of the genus ''Allium''. The shallot is a botanical variety of the onion which was classified as a separate species until 2010. Its close relatives include garlic, scallion, leek, and chive. This genus also contains several other species variously referred to as onions and cultivated for food, such as the Japanese bunching onion (''Allium fistulosum''), the tree onion (''A.'' × ''proliferum''), and the Canada onion (''Allium canadense''). The name ''wild onion'' is applied to a number of ''Allium'' species, but ''A. cepa'' is exclusively known from cultivation. Its ancestral wild original form is not known, although escapes from cultivation have become established in some regions. The onion is most frequently a biennial or a perennial plant, but is usually treated as an annual and harvested in its fi ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Deletion Mutation
In genetics Genetics is the study of genes, genetic variation, and heredity in organisms.Hartl D, Jones E (2005) It is an important branch in biology because heredity is vital to organisms' evolution. Gregor Mendel, a Moravian Augustinian friar wor ..., a deletion (also called gene deletion, deficiency, or deletion mutation) (sign: delta (letter), Δ) is a mutation (a genetic aberration) in which a part of a chromosome or a sequence of DNA is left out during DNA replication. Any number of nucleotides can be deleted, from a single Nucleobase, base to an entire piece of chromosome. Some chromosomes have fragile spots where breaks occur which result in the deletion of a part of chromosome. The breaks can be induced by heat, viruses, radiations, chemicals. When a chromosome breaks, a part of it is deleted or lost, the missing piece of chromosome is referred to as deletion or a deficiency. For synapsis to occur between a chromosome with a large intercalary deficiency and a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Cuscuta
''Cuscuta'' (), commonly known as dodder or amarbel, is a genus of over 201 species of yellow, orange, or red (rarely green) parasitic plants. Formerly treated as the only genus in the family Cuscutaceae, it now is accepted as belonging in the morning glory family, Convolvulaceae, on the basis of the work of the Angiosperm Phylogeny Group. The genus is found throughout the temperate and tropical regions of the world, with the greatest species diversity in subtropical and tropical regions; the genus becomes rare in cool temperate climates, with only four species native to northern Europe. Folk names include: strangle tare, scaldweed, beggarweed, lady's laces, fireweed, wizard's net, devil's guts, devil's hair, devil's ringlet, goldthread, hailweed, hairweed, hellbine, love vine, pull-down, strangleweed, angel hair, and witch's hair. Description Cuscuta can be identified by its thin stems appearing leafless, with the leaves reduced to minute scales. In these respects it closely r ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Stylet (anatomy)
A stylet is a hard, sharp, anatomical structure found in some invertebrates. For example, the word ''stylet'' or stomatostyle is used for the primitive piercing mouthparts of some nematodes and some nemerteans. In these groups the stylet is a hardened protrusible opening to the stomach. These stylets are adapted for the piercing of cell walls and usually function by providing the operative organism with access to the nutrients contained within the prey cell. The mouthparts of tardigrades, diptera and aphid Aphids are small sap-sucking insects and members of the superfamily Aphidoidea. Common names include greenfly and blackfly, although individuals within a species can vary widely in color. The group includes the fluffy white woolly aphids. A t ...s are also called stylets. In octopodes, the stylets are internal, needle-like bent rods within the mantle, the vestigial remnants of an external shell. References Nematode anatomy {{Animal-anatomy-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Leek Yellow Stripe Virus
Leek yellow stripe virus (LYSV) belongs to the genus ''Potyvirus''. It was first detected in leek but also infects garlic and onion worldwide. Economically less important '' Allium'' spp., such as ''Allium angulosum'', ''Allium caeruleum'', '' Allium cyathophorum'', '' Allium nutans'', '' Allium scorodoprasum'', ''Allium senescens ''Allium senescens'', commonly called aging chive, German garlic, or broadleaf chives, is a species of flowering plant in the genus ''Allium'' (which includes all the ornamental and culinary onions and garlic). Description A bulbous herbaceous ...'' subsp. ''montanum'' were also found to harbor the virus. Epidemiology LYSV causes typical yellow stripe symptom on leek. A yield reduction of up to 54% on garlic has been reported. The virus is transmitted in non-persistent manner by '' Aphis fabae'' and '' Myzus persicae'' but not by seeds. Genome Its ssRNA genome has one large open reading frame (ORF) that encodes a polyprotein of ca. 10,131 nt and ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Aphid
Aphids are small sap-sucking insects and members of the superfamily Aphidoidea. Common names include greenfly and blackfly, although individuals within a species can vary widely in color. The group includes the fluffy white woolly aphids. A typical life cycle involves flightless females giving live birth to female nymphs—who may also be already pregnant, an adaptation scientists call telescoping generations—without the involvement of males. Maturing rapidly, females breed profusely so that the number of these insects multiplies quickly. Winged females may develop later in the season, allowing the insects to colonize new plants. In temperate regions, a phase of sexual reproduction occurs in the autumn, with the insects often overwintering as eggs. The life cycle of some species involves an alternation between two species of host plants, for example between an annual crop and a woody plant. Some species feed on only one type of plant, while others are generalists, coloni ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
RNA Silencing Suppressor P19
RNA silencing suppressor p19 (also known as Tombusvirus P19 core protein and 19 kDa symptom severity modulator) is a protein expressed from the ORF4 gene in the genome of tombusviruses. These viruses are positive-sense single-stranded RNA viruses that infect plant cells, in which RNA silencing forms a widespread and robust antiviral defense system. The p19 protein serves as a counter-defense strategy, specifically binding the 19- to 21-nucleotide double-stranded RNAs that function as small interfering RNA (siRNA) in the RNA silencing system. By sequestering siRNA, p19 suppresses RNA silencing and promotes viral proliferation. The p19 protein is considered a significant virulence factor and a component of an evolutionary arms race between plants and their pathogens. Structure The p19 protein received its name from its size, being approximately 19 kilodaltons. It forms a functional homodimer. The crystal structures are available of p19 proteins from the tomato bushy stunt v ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Helper-component Proteinase
Helper-component proteinase (, ''HC-Pro'') is an enzyme. This enzyme catalyses the following chemical reaction : Hydrolyses a Gly-Gly bond at its own C-terminus, commonly in the sequence -Tyr-Xaa-Val-Gly-Gly, in the processing of the potyviral polyprotein This enzyme is present in plant RNA viruses of the '' Potyviridae'' family. HC-Pro is encoded by all potyviruses, but is absent in some members of the ''Ipomovirus ''Ipomovirus'' is a genus of positive-strand RNA viruses in the family '' Potyviridae''. Member viruses infect plants and are transmitted by whiteflies ('' Bemisia tabaci''). The name of the genus is derived from '' Ipomoea'' – the generic na ...'' genus. HC-Pro is involved in virus transmission, virus polyprotein processing, and suppression of RNA silencing, an antiviral mechanism of plants. References External links * {{Portal bar, Biology, border=no EC 3.4.22 ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
N-terminus
The N-terminus (also known as the amino-terminus, NH2-terminus, N-terminal end or amine-terminus) is the start of a protein or polypeptide, referring to the free amine group (-NH2) located at the end of a polypeptide. Within a peptide, the amine group is bonded to the carboxylic group of another amino acid, making it a chain. That leaves a free carboxylic group at one end of the peptide, called the C-terminus, and a free amine group on the other end called the N-terminus. By convention, peptide sequences are written N-terminus to C-terminus, left to right (in LTR writing systems). This correlates the translation direction to the text direction, because when a protein is translated from messenger RNA, it is created from the N-terminus to the C-terminus, as amino acids are added to the carboxyl end of the protein. Chemistry Each amino acid has an amine group and a carboxylic group. Amino acids link to one another by peptide bonds which form through a dehydration reaction that ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Amino Acids
Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although hundreds of amino acids exist in nature, by far the most important are the alpha-amino acids, which comprise proteins. Only 22 alpha amino acids appear in the genetic code. Amino acids can be classified according to the locations of the core structural functional groups, as Alpha and beta carbon, alpha- , beta- , gamma- or delta- amino acids; other categories relate to Chemical polarity, polarity, ionization, and side chain group type (aliphatic, Open-chain compound, acyclic, aromatic, containing hydroxyl or sulfur, etc.). In the form of proteins, amino acid '' residues'' form the second-largest component (water being the largest) of human muscles and other tissues. Beyond their role as residues in proteins, amino acids participate in a number of processes such as neurotransmitter transport and biosynthesis. It is thought that they played a key role in enabling lif ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Plant Virus
Plant viruses are viruses that affect plants. Like all other viruses, plant viruses are obligate intracellular parasites that do not have the molecular machinery to replicate without a host. Plant viruses can be pathogenic to higher plants. Most plant viruses are rod-shaped, with protein discs forming a tube surrounding the viral genome; isometric particles are another common structure. They rarely have an envelope. The great majority have an RNA genome, which is usually small and single stranded (ss), but some viruses have double-stranded (ds) RNA, ssDNA or dsDNA genomes. Although plant viruses are not as well understood as their animal counterparts, one plant virus has become very recognizable: ''tobacco mosaic virus'' (TMV), the first virus to be discovered. This and other viruses cause an estimated US$60 billion loss in crop yields worldwide each year. Plant viruses are grouped into 73 genera and 49 families. However, these figures relate only to cultivated plants, which r ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Polyprotein
Proteolysis is the breakdown of proteins into smaller polypeptides or amino acids. Uncatalysed, the hydrolysis of peptide bonds is extremely slow, taking hundreds of years. Proteolysis is typically catalysed by cellular enzymes called proteases, but may also occur by intra-molecular digestion. Proteolysis in organisms serves many purposes; for example, digestive enzymes break down proteins in food to provide amino acids for the organism, while proteolytic processing of a polypeptide chain after its synthesis may be necessary for the production of an active protein. It is also important in the regulation of some physiological and cellular processes including apoptosis, as well as preventing the accumulation of unwanted or misfolded proteins in cells. Consequently, abnormality in the regulation of proteolysis can cause disease. Proteolysis can also be used as an analytical tool for studying proteins in the laboratory, and it may also be used in industry, for example in food proc ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
