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New Production
In biological oceanography, new production is supported by nutrient inputs from outside the euphotic zone, especially upwelling of nutrients from deep water, but also from terrestrial and atmosphere sources (as opposite to regenerated production, which is supported by recycling of nutrients in the euphotic zone). New production depends on mixing and vertical advective processes associated with the circulation. New and regenerated production Bio-available nitrogen occurs in the ocean in several forms, including simple ionic forms such as nitrate (NO3−), nitrite (NO2−) and ammonium (NH4+), and more complex organic forms such as urea ((NH2)2CO). These forms are utilised by autotrophic phytoplankton to synthesise organic molecules such as amino acids (the building blocks of proteins). Grazing of phytoplankton by zooplankton and larger organisms transfers this organic nitrogen up the food chain and throughout the marine food-web. When nitrogenous organic molecules are ultimately ...
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Oceanography
Oceanography (), also known as oceanology and ocean science, is the scientific study of the oceans. It is an Earth science, which covers a wide range of topics, including ecosystem dynamics; ocean currents, waves, and geophysical fluid dynamics; plate tectonics and the geology of the sea floor; and fluxes of various chemical substances and physical properties within the ocean and across its boundaries. These diverse topics reflect multiple disciplines that oceanographers utilize to glean further knowledge of the world ocean, including astronomy, biology, chemistry, climatology, geography, geology, hydrology, meteorology and physics. Paleoceanography studies the history of the oceans in the geologic past. An oceanographer is a person who studies many matters concerned with oceans, including marine geology, physics, chemistry and biology. History Early history Humans first acquired knowledge of the waves and currents of the seas and oceans in pre-historic times. Observations ...
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Proteins
Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions within organisms, including catalysing metabolic reactions, DNA replication, responding to stimuli, providing structure to cells and organisms, and transporting molecules from one location to another. Proteins differ from one another primarily in their sequence of amino acids, which is dictated by the nucleotide sequence of their genes, and which usually results in protein folding into a specific 3D structure that determines its activity. A linear chain of amino acid residues is called a polypeptide. A protein contains at least one long polypeptide. Short polypeptides, containing less than 20–30 residues, are rarely considered to be proteins and are commonly called peptides. The individual amino acid residues are bonded together by peptide bonds and adjacent amino acid residues. The sequence of amino acid residues ...
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Chemical Oceanography
Marine chemistry, also known as ocean chemistry or chemical oceanography, is influenced by plate tectonics and seafloor spreading, turbidity currents, sediments, pH levels, atmospheric constituents, metamorphic activity, and ecology. The field of chemical oceanography studies the chemistry of marine environments including the influences of different variables. Marine life has adapted to the chemistries unique to earth's oceans, and marine ecosystems are sensitive to changes in ocean chemistry. The impact of human activity on the chemistry of the earth's oceans has increased over time, with pollution from industry and various land-use practices significantly affecting the oceans. Moreover, increasing levels of carbon dioxide in the earth's atmosphere have led to ocean acidification, which has negative effects on marine ecosystems. The international community has agreed that restoring the chemistry of the oceans is a priority, and efforts toward this goal are tracked as part of ...
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Biological Oceanography
Biological oceanography is the study of how organisms affect and are affected by the physics, chemistry, and geology of the oceanographic system. Biological oceanography may also be referred to as ocean ecology, in which the root word of ecology is ''Oikos'' (oικoσ), meaning ‘house’ or ‘habitat’ in Greek. With that in mind, it is of no surprise then that the main focus of biological oceanography is on the microorganisms within the ocean; looking at how they are affected by their environment and how that affects larger marine creatures and their ecosystem.Lalli, Carol M., and Timothy R. Parsons. "Introduction." Biological Oceanography: An Introduction. First Edition ed. Tarrytown, New York: Pergamon, 1993. 7-21. Print. Biological oceanography is similar to marine biology, but is different because of the perspective used to study the ocean. Biological oceanography takes a bottom-up approach (in terms of the food web), while marine biology studies the ocean from a top-down ...
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F-ratio (oceanography)
In oceanic biogeochemistry, the f-ratio is the fraction of total primary production fuelled by nitrate (as opposed to that fuelled by other nitrogen compounds such as ammonium). The ratio was originally defined by Richard Eppley and Bruce Peterson in one of the first papers estimating global oceanic production. This fraction was originally believed significant because it appeared to directly relate to the sinking (export) flux of organic marine snow from the surface ocean by the biological pump. However, this interpretation relied on the assumption of a strong depth-partitioning of a parallel process, nitrification, that more recent measurements has questioned. Overview Gravitational sinking of organisms (or the remains of organisms) transfers particulate organic carbon from the surface waters of the ocean to its deep interior. This process is known as the biological pump, and quantifying it is of interest to scientists because it is an important aspect of the Earth's c ...
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Aphotic Zone
The aphotic zone (aphotic from Greek prefix + "without light") is the portion of a lake or ocean where there is little or no sunlight. It is formally defined as the depths beyond which less than 1 percent of sunlight penetrates. Above the aphotic zone is the photic zone, which consists of the euphotic zone and the disphotic zone. The euphotic zone is the layer of water in which there is enough light for net photosynthesis to occur. The disphotic zone, also known as the twilight zone, is the layer of water with enough light for predators to see but not enough for the rate of photosynthesis to be greater than the rate of respiration. The depth at which less than one percent of sunlight reaches begins the aphotic zone. While most of the ocean’s biomass lives in the photic zone, the majority of the ocean’s water lies in the aphotic zone. Bioluminescence is more abundant than sunlight in this zone. Most food in this zone comes from dead organisms sinking to the bottom of the la ...
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Primary Production
In ecology, primary production is the synthesis of organic compounds from atmospheric or aqueous carbon dioxide. It principally occurs through the process of photosynthesis, which uses light as its source of energy, but it also occurs through chemosynthesis, which uses the oxidation or reduction of inorganic chemical compounds as its source of energy. Almost all life on Earth relies directly or indirectly on primary production. The organisms responsible for primary production are known as ''primary producers'' or autotrophs, and form the base of the food chain. In terrestrial ecoregions, these are mainly plants, while in aquatic ecoregions algae predominate in this role. Ecologists distinguish primary production as either ''net'' or ''gross'', the former accounting for losses to processes such as cellular respiration, the latter not. Overview Primary production is the production of chemical energy in organic compounds by living organisms. The main source of this energy is su ...
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Food-web
A food web is the natural interconnection of food chains and a graphical representation of what-eats-what in an ecological community. Another name for food web is consumer-resource system. Ecologists can broadly lump all life forms into one of two categories called trophic levels: 1) the autotrophs, and 2) the heterotrophs. To maintain their bodies, grow, develop, and to reproduce, autotrophs produce organic matter from inorganic substances, including both minerals and gases such as carbon dioxide. These chemical reactions require energy, which mainly comes from the Sun and largely by photosynthesis, although a very small amount comes from bioelectrogenesis in wetlands, and mineral electron donors in hydrothermal vents and hot springs. These trophic levels are not binary, but form a gradient that includes complete autotrophs, which obtain their sole source of carbon from the atmosphere, mixotrophs (such as carnivorous plants), which are autotrophic organisms that partia ...
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Amino Acids
Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although hundreds of amino acids exist in nature, by far the most important are the alpha-amino acids, which comprise proteins. Only 22 alpha amino acids appear in the genetic code. Amino acids can be classified according to the locations of the core structural functional groups, as Alpha and beta carbon, alpha- , beta- , gamma- or delta- amino acids; other categories relate to Chemical polarity, polarity, ionization, and side chain group type (aliphatic, Open-chain compound, acyclic, aromatic, containing hydroxyl or sulfur, etc.). In the form of proteins, amino acid '' residues'' form the second-largest component (water being the largest) of human muscles and other tissues. Beyond their role as residues in proteins, amino acids participate in a number of processes such as neurotransmitter transport and biosynthesis. It is thought that they played a key role in enabling lif ...
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Euphotic Zone
The photic zone, euphotic zone, epipelagic zone, or sunlight zone is the uppermost layer of a body of water that receives sunlight, allowing phytoplankton to perform photosynthesis. It undergoes a series of physical, chemical, and biological processes that supply nutrients into the upper water column. The photic zone is home to the majority of aquatic life due to the activity (primary production) of the phytoplankton. Photosynthesis in photic zone In the photic zone, the photosynthesis rate exceeds the respiration rate. This is due to the abundant solar energy which is used as an energy source for photosynthesis by primary producers such as phytoplankton. These phytoplankton grow extremely quickly because of sunlight's heavy influence, enabling it to be produced at a fast rate. In fact, ninety five percent of photosynthesis in the ocean occurs in the photic zone. Therefore, if we go deeper, beyond the photic zone, such as into the compensation point, there is little to no phyto ...
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Phytoplankton
Phytoplankton () are the autotrophic (self-feeding) components of the plankton community and a key part of ocean and freshwater ecosystems. The name comes from the Greek words (), meaning 'plant', and (), meaning 'wanderer' or 'drifter'. Phytoplankton obtain their energy through photosynthesis, as do trees and other plants on land. This means phytoplankton must have light from the sun, so they live in the well-lit surface layers (euphotic zone) of oceans and lakes. In comparison with terrestrial plants, phytoplankton are distributed over a larger surface area, are exposed to less seasonal variation and have markedly faster turnover rates than trees (days versus decades). As a result, phytoplankton respond rapidly on a global scale to climate variations. Phytoplankton form the base of marine and freshwater food webs and are key players in the global carbon cycle. They account for about half of global photosynthetic activity and at least half of the oxygen production, despite ...
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Autotrophic
An autotroph or primary producer is an organism that produces complex organic compounds (such as carbohydrates, fats, and proteins) using carbon from simple substances such as carbon dioxide,Morris, J. et al. (2019). "Biology: How Life Works", 3rd edition, W. H. Freeman. generally using energy from light (photosynthesis) or inorganic chemical reactions (chemosynthesis). They convert an abiotic source of energy (e.g. light) into energy stored in organic compounds, which can be used by other organisms (e.g. heterotrophs). Autotrophs do not need a living source of carbon or energy and are the producers in a food chain, such as plants on land or algae in water (in contrast to heterotrophs as consumers of autotrophs or other heterotrophs). Autotrophs can reduce carbon dioxide to make organic compounds for biosynthesis and as stored chemical fuel. Most autotrophs use water as the reducing agent, but some can use other hydrogen compounds such as hydrogen sulfide. The primary produc ...
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