Heterobasidiomycetes
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Heterobasidiomycetes
Heterobasidiomycetes, including jelly fungi, smuts and rusts, are basidiomycetes with septate basidia. This contrasts them to homobasidiomycetes (alternatively called holobasidiomycetes), including most mushrooms and other Agaricomycetes, which have aseptate basidia. The division of all basidiomycetes between these two groups has been influential in fungal taxonomy, and is still used informally, but it is no longer the basis of formal classification. In modern taxonomy homobasidiomycetes roughly correspond to the monophyletic class Agaricomycetes, whereas heterobasidiomycetes are paraphyletic and as such correspond to various taxa from different taxonomic ranks, including the Basidiomycota other than Agaricomycetes and a few basal groups within Agaricomycetes. Distinction between homo- and heterobasidiomycetes In addition to having septate basidia, heterobasidiomycetes also frequently possess large irregularly shaped sterigmata and spores that are capable of self-replicatio ...
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Tulasnellaceae
The Tulasnellaceae are a family of fungi in the order Cantharellales. The family comprises mainly effused (patch-forming) fungi formerly referred to the " jelly fungi" or heterobasidiomycetes. Species are wood- or litter-rotting saprotrophs, but many are also endomycorrhizal associates of orchids and some have also been thought to form ectomycorrhizal associations with trees and other plants. Taxonomy History The family was described in 1897 by the Swedish botanist and mycologist Hans Oscar Juel to accommodate species of fungi producing basidiocarps (fruit bodies) having distinctive basidia with grossly swollen sterigmata. He included two genera: '' Tulasnella'' itself and the poroid genus ''Muciporus'' (the latter subsequently found to be no more than ''Tulasnella'' species growing over the surface of old polypores). In 1900, the French mycologist Narcisse Patouillard included the Tulasnellaceae within the heterobasidiomycetes or " jelly fungi" and in 1922 British mycologi ...
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Ceratobasidiaceae
The Ceratobasidiaceae are a family of fungi in the order Cantharellales. All species within the family have basidiocarps (fruit bodies) that are thin and effused. They have sometimes been included within the corticioid fungi or alternatively within the " heterobasidiomycetes". Species are saprotrophic, but some are also facultative plant pathogens or are associated with orchid mycorrhiza. Genera of economic importance include '' Ceratobasidium'' and ''Rhizoctonia'', both of which contain plant pathogenic species causing diseases of commercial crops and turf grass. Taxonomy The family was created in 1948 by American mycologist G.W. Martin to accommodate species of corticioid fungi with heterobasidiomycete features (elongated sterigmata and basidiospores that give rise to secondary spores). He restricted the Ceratobasidiaceae to the genus ''Ceratobasidium'', though including within the genus species later placed in ''Thanatephorus'' and '' Oliveonia''. In 1981, Jülich created ...
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Basidium
A basidium () is a microscopic sporangium (a spore-producing structure) found on the hymenophore of fruiting bodies of basidiomycete fungi which are also called tertiary mycelium, developed from secondary mycelium. Tertiary mycelium is highly-coiled secondary myceliuma dikaryon. The presence of basidia is one of the main characteristic features of the Basidiomycota. A basidium usually bears four sexual spores called basidiospores; occasionally the number may be two or even eight. In a typical basidium, each basidiospore is borne at the tip of a narrow prong or horn called a sterigma (), and is forcibly discharged upon maturity. The word ''basidium'' literally means "little pedestal", from the way in which the basidium supports the spores. However, some biologists suggest that the structure more closely resembles a club. An immature basidium is known as a basidiole. Structure Most basidiomycota have single celled basidia (holobasidia), but in some groups basidia can be ...
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Jelly Fungi
Jelly fungi are a paraphyletic group of several heterobasidiomycete fungal orders from different classes of the subphylum Agaricomycotina: Tremellales, Dacrymycetales, Auriculariales and Sebacinales. These fungi are so named because their foliose, irregularly branched fruiting body is, or appears to be, the consistency of jelly. Actually, many are somewhat rubbery and gelatinous. When dried, jelly fungi become hard and shriveled; when exposed to water, they return to their original form. Many species of jelly fungi can be eaten raw; poisonous jelly fungi are rare. However, many species have an unpalatable texture or taste. They may or may not be sought in mushroom hunting due to their taste, which is described as similar to that of soil. However, some species, '' Tremella fuciformis'' for example, are not only edible but prized for use in soup and vegetable dishes. Notable jelly fungi *'' Ascocoryne sarcoides'' – jelly drops, purple jellydisc (often mistaken for basidi ...
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Germination
Germination is the process by which an organism grows from a seed or spore. The term is applied to the sprouting of a seedling from a seed of an angiosperm or gymnosperm, the growth of a sporeling from a spore, such as the spores of fungi, ferns, bacteria, and the growth of the pollen tube from the pollen grain of a seed plant. Seed plants Germination is usually the growth of a plant contained within a seed; it results in the formation of the seedling. It is also the process of reactivation of metabolic machinery of the seed resulting in the emergence of radicle and plumule. The seed of a vascular plant is a small package produced in a fruit or cone after the union of male and female reproductive cells. All fully developed seeds contain an embryo and, in most plant species some store of food reserves, wrapped in a seed coat. Some plants produce varying numbers of seeds that lack embryos; these are empty seeds which never germinate. Dormant seeds are viable seed ...
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Smut (fungus)
The smuts are multicellular fungi characterized by their large numbers of teliospores. The smuts get their name from a Germanic word for dirt because of their dark, thick-walled, and dust-like teliospores. They are mostly Ustilaginomycetes (phylum Basidiomycota) and can cause plant disease. The smuts are grouped with the other basidiomycetes because of their commonalities concerning sexual reproduction. Smuts are cereal and crop pathogens that most notably affect members of the grass family ( Poaceae) and sedges (Cyperaceae). Economically important hosts include maize, barley, wheat, oats, sugarcane, and forage grasses. They eventually hijack the plants' reproductive systems, forming galls which darken and burst, releasing fungal teliospores which infect other plants nearby. Before infection can occur, the smuts need to undergo a successful mating to form dikaryotic hyphae (two haploid cells fuse to form a dikaryon). Wild rice smut '' Ustilago esculenta'' is a species of fu ...
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Ustilaginomycotina
The Ustilaginomycotina is a subdivision within the division Basidiomycota of the kingdom Fungi. It consists of the classes Ustilaginomycetes and Exobasidiomycetes, and in 2014 the subdivision was reclassified and the two additional classes Malasseziomycetes and Moniliellomycetes added. The name was first published by Doweld in 2001; Bauer and colleagues later published it in 2006 as an isonym. Ustilagomycotina and Agaricomycotina are considered to be sister groups, and they are in turn sister groups to the subdivision Pucciniomycotina. Ustilaginomycotina comprises 115 genera with more than 1700 species. The subdivision is mostly plant parasites on vascular plants, and the distribution of the subdivision is therefore restricted to the distribution of the host. The group is also called the true smut fungi because of the production of teliospores. The name smut is still used as a term since it circumscribes the organization and life cycle of Ustilaginomycotina, but it is not a ...
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Evolutionary Grade
A grade is a taxon united by a level of morphological or physiological complexity. The term was coined by British biologist Julian Huxley, to contrast with clade, a strictly phylogenetic unit. Definition An evolutionary grade is a group of species united by morphological or physiological traits, that has given rise to another group that has major differences from the ancestral condition, and is thus not considered part of the ancestral group, while still having enough similarities that we can group them under the same clade. The ancestral group will not be phylogenetically complete (i.e. will not form a clade), so will represent a paraphyletic taxon. In order to fully understand evolutionary grades, one must first get a better understanding of Phylogenetics, defined as "''In biology, is the study of the evolutionary history and relationships among individuals or groups of organisms (e.g. species, or populations). These relationships are discovered through phylogenetic infer ...
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Ribosomal RNA
Ribosomal ribonucleic acid (rRNA) is a type of non-coding RNA which is the primary component of ribosomes, essential to all cells. rRNA is a ribozyme which carries out protein synthesis in ribosomes. Ribosomal RNA is transcribed from ribosomal DNA (rDNA) and then bound to ribosomal proteins to form small and large ribosome subunits. rRNA is the physical and mechanical factor of the ribosome that forces transfer RNA (tRNA) and messenger RNA (mRNA) to process and translate the latter into proteins. Ribosomal RNA is the predominant form of RNA found in most cells; it makes up about 80% of cellular RNA despite never being translated into proteins itself. Ribosomes are composed of approximately 60% rRNA and 40% ribosomal proteins by mass. Structure Although the primary structure of rRNA sequences can vary across organisms, base-pairing within these sequences commonly forms stem-loop configurations. The length and position of these rRNA stem-loops allow them to create three-dimensio ...
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Phylogeny
A phylogenetic tree (also phylogeny or evolutionary tree Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, MA.) is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon similarities and differences in their physical or genetic characteristics. All life on Earth is part of a single phylogenetic tree, indicating common ancestry. In a ''rooted'' phylogenetic tree, each node with descendants represents the inferred most recent common ancestor of those descendants, and the edge lengths in some trees may be interpreted as time estimates. Each node is called a taxonomic unit. Internal nodes are generally called hypothetical taxonomic units, as they cannot be directly observed. Trees are useful in fields of biology such as bioinformatics, systematics, and phylogenetics. ''Unrooted'' trees illustrate only the relatedness of the leaf nodes and do not require the ancestral root ...
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Molecular Systematics
Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to determine the processes by which diversity among species has been achieved. The result of a molecular phylogenetic analysis is expressed in a phylogenetic tree. Molecular phylogenetics is one aspect of molecular systematics, a broader term that also includes the use of molecular data in taxonomy and biogeography. Molecular phylogenetics and molecular evolution correlate. Molecular evolution is the process of selective changes (mutations) at a molecular level (genes, proteins, etc.) throughout various branches in the tree of life (evolution). Molecular phylogenetics makes inferences of the evolutionary relationships that arise due to molecular evolution and results in the construction of a phylogenetic tree. History The theoretical fram ...
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Plants
Plants are predominantly photosynthetic eukaryotes of the kingdom Plantae. Historically, the plant kingdom encompassed all living things that were not animals, and included algae and fungi; however, all current definitions of Plantae exclude the fungi and some algae, as well as the prokaryotes (the archaea and bacteria). By one definition, plants form the clade Viridiplantae (Latin name for "green plants") which is sister of the Glaucophyta, and consists of the green algae and Embryophyta (land plants). The latter includes the flowering plants, conifers and other gymnosperms, ferns and their allies, hornworts, liverworts, and mosses. Most plants are multicellular organisms. Green plants obtain most of their energy from sunlight via photosynthesis by primary chloroplasts that are derived from endosymbiosis with cyanobacteria. Their chloroplasts contain chlorophylls a and b, which gives them their green color. Some plants are parasitic or mycotrophic and have lost the a ...
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