Co-occurrence Networks
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Co-occurrence Networks
Co-occurrence network, sometimes referred to as a semantic network, is a method to analyze text that includes a graphic visualization of potential relationships between people, organizations, concepts, biological organisms like bacteria or other entities represented within written material. The generation and visualization of co-occurrence networks has become practical with the advent of electronically stored text compliant to text mining. By way of definition, co-occurrence networks are the collective interconnection of terms based on their paired presence within a specified unit of text. Networks are generated by connecting pairs of terms using a set of criteria defining co-occurrence. For example, terms A and B may be said to “co-occur” if they both appear in a particular article. Another article may contain terms B and C. Linking A to B and B to C creates a co-occurrence network of these three terms. Rules to define co-occurrence within a text corpus can be set according ...
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Word Order
In linguistics, word order (also known as linear order) is the order of the syntactic constituents of a language. Word order typology studies it from a cross-linguistic perspective, and examines how different languages employ different orders. Correlations between orders found in different syntactic sub-domains are also of interest. The primary word orders that are of interest are * the ''constituent order'' of a clause, namely the relative order of subject, object, and verb; * the order of modifiers (adjectives, numerals, demonstratives, possessives, and adjuncts) in a noun phrase; * the order of adverbials. Some languages use relatively fixed word order, often relying on the order of constituents to convey grammatical information. Other languages—often those that convey grammatical information through inflection—allow more flexible word order, which can be used to encode pragmatic information, such as topicalisation or focus. However, even languages with flexible word ...
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Biological Databases
Biological databases are libraries of biological sciences, collected from scientific experiments, published literature, high-throughput experiment technology, and computational analysis. They contain information from research areas including genomics, proteomics, metabolomics, microarray gene expression, and phylogenetics. Information contained in biological databases includes gene function, structure, localization (both cellular and chromosomal), clinical effects of mutations as well as similarities of biological sequences and structures. Biological databases can be classified by the kind of data they collect (see below). Broadly, there are molecular databases (for sequences, molecules, etc.), functional databases (for physiology, enzyme activities, phenotypes, ecology etc), taxonomic databases (for species and other taxonomic ranks), images and other media, or specimens (for museum collections etc.) Databases are important tools in assisting scientists to analyze and explain ...
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Social Network Analysis
Social network analysis (SNA) is the process of investigating social structures through the use of networks and graph theory. It characterizes networked structures in terms of ''nodes'' (individual actors, people, or things within the network) and the ''ties'', ''edges'', or ''links'' (relationships or interactions) that connect them. Examples of social structures commonly visualized through social network analysis include social media networks, memes spread, information circulation, friendship and acquaintance networks, business networks, knowledge networks, difficult working relationships, social networks, collaboration graphs, kinship, disease transmission, and sexual relationships. These networks are often visualized through ''sociograms'' in which nodes are represented as points and ties are represented as lines. These visualizations provide a means of qualitatively assessing networks by varying the visual representation of their nodes and edges to reflect attributes of in ...
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Topic Spotting
Document classification or document categorization is a problem in library science, information science and computer science. The task is to assign a document to one or more classes or categories. This may be done "manually" (or "intellectually") or algorithmically. The intellectual classification of documents has mostly been the province of library science, while the algorithmic classification of documents is mainly in information science and computer science. The problems are overlapping, however, and there is therefore interdisciplinary research on document classification. The documents to be classified may be texts, images, music, etc. Each kind of document possesses its special classification problems. When not otherwise specified, text classification is implied. Documents may be classified according to their subjects or according to other attributes (such as document type, author, printing year etc.). In the rest of this article only subject classification is considered. T ...
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Hyperlink
In computing, a hyperlink, or simply a link, is a digital reference to data that the user can follow or be guided by clicking or tapping. A hyperlink points to a whole document or to a specific element within a document. Hypertext is text with hyperlinks. The text that is linked from is known as anchor text. A software system that is used for viewing and creating hypertext is a ''hypertext system'', and to create a hyperlink is ''to hyperlink'' (or simply ''to link''). A user following hyperlinks is said to ''navigate'' or ''browse'' the hypertext. The document containing a hyperlink is known as its source document. For example, in an online reference work such as Wikipedia or Google, many words and terms in the text are hyperlinked to definitions of those terms. Hyperlinks are often used to implement reference mechanisms such as tables of contents, footnotes, bibliographies, indexes, letters, and glossaries. In some hypertext, hyperlinks can be bidirectional: they can be ...
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Open Source Intelligence
Open-source intelligence (OSINT) is the collection and analysis of data gathered from open sources (covert and publicly available sources) to produce actionable intelligence. OSINT is primarily used in national security, law enforcement, and business intelligence functions and is of value to analysts who use non-sensitive intelligence in answering classified, unclassified, or proprietary intelligence requirements across the previous intelligence disciplines. OSINT sources can be divided up into six different categories of information flow: *Media, print newspapers, magazines, radio, and television from across and between countries. *Internet, online publications, blogs, discussion groups, citizen media (i.e. – cell phone videos, and user created content), YouTube, and other social media websites (i.e. – Facebook, Twitter, , etc.). This source also outpaces a variety of other sources due to its timeliness and ease of access. *Public government data, public government repo ...
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NameBase
NameBase is a web-based cross-indexed database of names that focuses on individuals involved in the international intelligence community, U.S. foreign policy, crime, and business. The focus is on the post-World War II era and on left of center, conspiracy theory, and espionage activities up to 2008. Overview Founder Daniel Brandt began collecting clippings and citations pertaining to influential people and intelligence agents in the 1960s and especially in the 1970s after becoming a member of Students for a Democratic Society, an organization that opposed US foreign policy. With the advent of personal computing, he developed a database which allowed subscribers to access the names of US intelligence agents. In the 1980s, through his company Micro Associates, he sold subscriptions to this computerized database under its original name, Public Information Research, Inc (PIR). At PIR's onset, Brandt was President of the newly formed non-profit corporation, and investigative research ...
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MEDLINE
MEDLINE (Medical Literature Analysis and Retrieval System Online, or MEDLARS Online) is a bibliographic database of life sciences and biomedical information. It includes bibliographic information for articles from academic journals covering medicine, nursing, pharmacy, dentistry, veterinary medicine, and health care. MEDLINE also covers much of the literature in biology and biochemistry, as well as fields such as molecular evolution. Compiled by the United States National Library of Medicine (NLM), MEDLINE is freely available on the Internet and searchable via PubMed and NLM's National Center for Biotechnology Information's Entrez system. History MEDLARS (Medical Literature Analysis and Retrieval System) is a computerised biomedical bibliographic retrieval system. It was launched by the National Library of Medicine in 1964 and was the first large scale, computer based, retrospective search service available to the general public. Initial development of MEDLARS Since 1879, ...
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PubGene
PubGene AS is a bioinformatics company located in Oslo, Norway and is the daughter company of PubGene Inc. In 2001, PubGene founders demonstrated one of the first applications of text mining to research in biomedicine (i.e., biomedical text mining). They went on to create the PubGene public search engine, exemplifying the approach they pioneered by presenting biomedical terms as graphical networks based on their co-occurrence in MEDLINE texts. The PubGene search engine has since been discontinued and incorporated into a commercial product. Co-occurrence networks provide a visual overview of possible relationships between terms and facilitate medical literature retrieval for relevant sets of articles implied by the network display. Commercial applications of the technology are available. Original development of PubGene technologies was undertaken in collaboration between the Norwegian Cancer Hospital (Radiumhospitalet) and the Norwegian University of Science and Technology. The w ...
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Internet
The Internet (or internet) is the global system of interconnected computer networks that uses the Internet protocol suite (TCP/IP) to communicate between networks and devices. It is a '' network of networks'' that consists of private, public, academic, business, and government networks of local to global scope, linked by a broad array of electronic, wireless, and optical networking technologies. The Internet carries a vast range of information resources and services, such as the inter-linked hypertext documents and applications of the World Wide Web (WWW), electronic mail, telephony, and file sharing. The origins of the Internet date back to the development of packet switching and research commissioned by the United States Department of Defense in the 1960s to enable time-sharing of computers. The primary precursor network, the ARPANET, initially served as a backbone for interconnection of regional academic and military networks in the 1970s to enable resource shari ...
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Data Domain
In data management and database analysis, a data domain is the collection of values that a data element may contain. The rule for determining the domain boundary may be as simple as a data type with an enumeration, enumerated list of values. For example, a database table (database), table that has information about people, with one record per person, might have a "marital status" column_(database), column. This column might be declared as a Data type#Strings, string data type, and allowed to have one of two known Code (metadata), code values: "M" for married, "S" for single, and Null (SQL), NULL for records where marital status is unknown or not applicable. The data domain for the marital status column is: "M", "S". In a database normalization, normalized data model, the Master data management, reference domain is typically specified in a reference table. Following the previous example, a Marital Status reference table would have exactly two records, one per allowed value—exclu ...
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