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Turing.jl
Probabilistic programming (PP) is a programming paradigm based on the declarative specification of probabilistic models, for which inference is performed automatically. Probabilistic programming attempts to unify probabilistic modeling and traditional general purpose programming in order to make the former easier and more widely applicable.Pfeffer, Avrom (2014), ''Practical Probabilistic Programming'', Manning Publications. p.28. It can be used to create systems that help make decisions in the face of uncertainty. Programming languages following the probabilistic programming paradigm are referred to as "probabilistic programming languages" (PPLs). Applications Probabilistic reasoning has been used for a wide variety of tasks such as predicting stock prices, recommending movies, diagnosing computers, detecting cyber intrusions and image detection. However, until recently (partially due to limited computing power), probabilistic programming was limited in scope, and most infere ...
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Programming Paradigm
A programming paradigm is a relatively high-level way to conceptualize and structure the implementation of a computer program. A programming language can be classified as supporting one or more paradigms. Paradigms are separated along and described by different dimensions of programming. Some paradigms are about implications of the execution model, such as allowing Side effect (computer science), side effects, or whether the sequence of operations is defined by the execution model. Other paradigms are about the way code is organized, such as grouping into units that include both state and behavior. Yet others are about Syntax (programming languages), syntax and Formal grammar, grammar. Some common programming paradigms include (shown in hierarchical relationship): * imperative programming, Imperative code directly controls Control flow, execution flow and state change, explicit statements that change a program state ** procedural programming, procedural organized as function (c ...
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Logic Programming
Logic programming is a programming, database and knowledge representation paradigm based on formal logic. A logic program is a set of sentences in logical form, representing knowledge about some problem domain. Computation is performed by applying logical reasoning to that knowledge, to solve problems in the domain. Major logic programming language families include Prolog, Answer Set Programming (ASP) and Datalog. In all of these languages, rules are written in the form of ''clauses'': :A :- B1, ..., Bn. and are read as declarative sentences in logical form: :A if B1 and ... and Bn. A is called the ''head'' of the rule, B1, ..., Bn is called the ''body'', and the Bi are called '' literals'' or conditions. When n = 0, the rule is called a ''fact'' and is written in the simplified form: :A. Queries (or goals) have the same syntax as the bodies of rules and are commonly written in the form: :?- B1, ..., Bn. In the simplest case of Horn clauses (or "definite" clauses), all ...
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BAli-Phy
BAli-Phy is a free software program for simultaneously estimating a multiple sequence alignment and its phylogenetic tree. BAli-Phy achieves high accuracy in alignment estimation by using information from the co-estimated phylogeny. BAli-Phy takes alignment uncertainty into account while estimating the phylogeny by averaging over possible alignments. Unlike most phylogeny inference software, input sequences need not be aligned beforehand. This differs from traditional approaches to alignment and phylogeny estimation, which first estimate the alignment without a high-quality tree estimate, and then estimate the tree given the alignment. BAli-Phy produces a Bayesian posterior distribution on both the alignments and the tree. The software shows uncertainty in both the alignment and the tree. BAli-Phy uses Markov chain Monte Carlo methods for estimation. It can take several days to run. Alignment uncertainty Alignment uncertainty stems from two main sources: near-optimal ali ...
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Haskell (programming Language)
Haskell () is a General-purpose programming language, general-purpose, static typing, statically typed, purely functional programming, purely functional programming language with type inference and lazy evaluation. Designed for teaching, research, and industrial applications, Haskell pioneered several programming language #Features, features such as type classes, which enable type safety, type-safe operator overloading, and Monad (functional programming), monadic input/output (IO). It is named after logician Haskell Curry. Haskell's main implementation is the Glasgow Haskell Compiler (GHC). Haskell's Semantics (computer science), semantics are historically based on those of the Miranda (programming language), Miranda programming language, which served to focus the efforts of the initial Haskell working group. The last formal specification of the language was made in July 2010, while the development of GHC continues to expand Haskell via language extensions. Haskell is used in a ...
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ProbLog
ProbLog is a probabilistic logic programming language that extends Prolog with probabilities. It minimally extends Prolog by adding the notion of a probabilistic fact, which combines the idea of logical atoms and random variables. Similarly to Prolog, ProbLog can query an atom. While Prolog returns the truth value of the queried atom, ProbLog returns the probability of it being true. Semantics A probabilistic fact is a pair (p, a) with a a ground atom and p \in , 1/math> the probability of a being true. A rule is defined by an atom h, called the head, and a finite set of n literals \, called the body. ProbLog programs consist of a set of probabilistic facts \mathcal and a set of rules \mathcal. Using the distribution semantics, a probability distribution is defined over the two-valued well-founded models of the atoms in the program. The probability of a model is defined as P(M) = \prod_ P(l) where the product runs over all the literals in the model M. For a query atom q th ...
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Probabilistic SQL
Probability is a branch of mathematics and statistics concerning events and numerical descriptions of how likely they are to occur. The probability of an event is a number between 0 and 1; the larger the probability, the more likely an event is to occur."Kendall's Advanced Theory of Statistics, Volume 1: Distribution Theory", Alan Stuart and Keith Ord, 6th ed., (2009), .William Feller, ''An Introduction to Probability Theory and Its Applications'', vol. 1, 3rd ed., (1968), Wiley, . This number is often expressed as a percentage (%), ranging from 0% to 100%. A simple example is the tossing of a fair (unbiased) coin. Since the coin is fair, the two outcomes ("heads" and "tails") are both equally probable; the probability of "heads" equals the probability of "tails"; and since no other outcomes are possible, the probability of either "heads" or "tails" is 1/2 (which could also be written as 0.5 or 50%). These concepts have been given an axiomatic mathematical formalizati ...
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Boolean Satisfiability Problem
In logic and computer science, the Boolean satisfiability problem (sometimes called propositional satisfiability problem and abbreviated SATISFIABILITY, SAT or B-SAT) asks whether there exists an Interpretation (logic), interpretation that Satisfiability, satisfies a given Boolean logic, Boolean Formula (mathematical logic), formula. In other words, it asks whether the formula's variables can be consistently replaced by the values TRUE or FALSE to make the formula evaluate to TRUE. If this is the case, the formula is called ''satisfiable'', else ''unsatisfiable''. For example, the formula "''a'' AND NOT ''b''" is satisfiable because one can find the values ''a'' = TRUE and ''b'' = FALSE, which make (''a'' AND NOT ''b'') = TRUE. In contrast, "''a'' AND NOT ''a''" is unsatisfiable. SAT is the first problem that was proven to be NP-complete—this is the Cook–Levin theorem. This means that all problems in the complexity class NP (complexity), NP, which includes a wide range of natu ...
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Answer Set Programming
Answer set programming (ASP) is a form of declarative programming oriented towards difficult (primarily NP-hard) search problems. It is based on the stable model (answer set) semantics of logic programming. In ASP, search problems are reduced to computing stable models, and ''answer set solvers''—programs for generating stable models—are used to perform search. The computational process employed in the design of many answer set solvers is an enhancement of the DPLL algorithm and, in principle, it always terminates (unlike Prolog query evaluation, which may lead to an infinite loop). In a more general sense, ASP includes all applications of answer sets to knowledge representation and reasoning and the use of Prolog-style query evaluation for solving problems arising in these applications. History An early example of answer set programming was the planning method proposed in 1997 by Dimopoulos, Nebel and Köhler. Their approach is based on the relationship between plans a ...
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B-Prolog
B-Prolog was a high-performance implementation of the standard Prolog language with several extended features including matching clauses, action rules for event handling, finite-domain constraint solving, arrays and hash tables, declarative loops, and tabling. First released in 1994, B-Prolog is now a widely used CLP system. The constraint solver of B-Prolog was ranked top in two categories in the Second International Solvers Competition, and it also took the second place in P class in the second ASP solver competition and the second place overall in the third ASP solver competition. B-Prolog underpins the PRISM system, a logic-based probabilistic reasoning and learning system. B-Prolog is a commercial product, but it can be used for learning and non-profit research purposes free of charge (since version 7.8 for individual users, including commercial individual users, B-Prolog is free of charge ). B-Prolog is not anymore actively developed, but it forms the basis for the Picat pr ...
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SQLite
SQLite ( "S-Q-L-ite", "sequel-ite") is a free and open-source relational database engine written in the C programming language. It is not a standalone app; rather, it is a library that software developers embed in their apps. As such, it belongs to the family of embedded databases. It is the most widely deployed database engine, as it is used by several of the top web browsers, operating systems, mobile phones, and other embedded systems. Many programming languages have bindings to the SQLite library. It generally follows PostgreSQL syntax, but does not enforce type checking by default. This means that one can, for example, insert a string into a column defined as an integer. Although it is a lightweight embedded database, SQLite implements most of the SQL standard and the relational model, including transactions and ACID guarantees. However, it omits many features implemented by other databases, such as materialized views and complete support for triggers and AL ...
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Scheme (programming Language)
Scheme is a dialect of the Lisp family of programming languages. Scheme was created during the 1970s at the MIT Computer Science and Artificial Intelligence Laboratory (MIT CSAIL) and released by its developers, Guy L. Steele and Gerald Jay Sussman, via a series of memos now known as the Lambda Papers. It was the first dialect of Lisp to choose lexical scope and the first to require implementations to perform tail-call optimization, giving stronger support for functional programming and associated techniques such as recursive algorithms. It was also one of the first programming languages to support first-class continuations. It had a significant influence on the effort that led to the development of Common Lisp.Common LISP: The Language, 2nd Ed., Guy L. Steele Jr. Digital Press; 1981. . "Common Lisp is a new dialect of Lisp, a successor to MacLisp, influenced strongly by ZetaLisp and to some extent by Scheme and InterLisp." The Scheme language is standardized in the offic ...
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