Simuloviridae
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Simuloviridae
''Yingchengvirus'' is a genus of double stranded DNA viruses that infect haloarchaea. The genus was previously named ''Betasphaerolipovirus''. Taxonomy The genus contains the following species: * '' Yingchengvirus HJIV1'' * '' Yingchengvirus NVIV1'' * '' Yingchengvirus SNJ1'' Morphology Viruses of this genus have tailless icosahedral virions with an internal lipid membrane located between the protein capsid and the circular double stranded DNA genome. Replication The temperate haloarchaeal virus SNJ1 displays lytic and lysogenic life cycles. During the lysogenic cycle, the virus resides in its host in the form of an extrachromosomal circular plasmid. Upon mitomycin C induction, large amounts of SNJ1 virions can be produced. SNJ1 genome replicates by the rolling-circle mechanism and is initiated by the virus-encoded RepA protein, which is homologous to the replication-initiation proteins of archaeal plasmids and bacterial transposases of the IS91 family insertion sequences Inser ...
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Genus
Genus ( plural genera ) is a taxonomic rank used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In the hierarchy of biological classification, genus comes above species and below family (taxonomy), family. In binomial nomenclature, the genus name forms the first part of the binomial species name for each species within the genus. :E.g. ''Panthera leo'' (lion) and ''Panthera onca'' (jaguar) are two species within the genus ''Panthera''. ''Panthera'' is a genus within the family Felidae. The composition of a genus is determined by taxonomy (biology), taxonomists. The standards for genus classification are not strictly codified, so different authorities often produce different classifications for genera. There are some general practices used, however, including the idea that a newly defined genus should fulfill these three criteria to be descriptively useful: # monophyly – all descendants ...
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Yingchengvirus HJIV1
''Yingchengvirus'' is a genus of double stranded DNA viruses that infect haloarchaea. The genus was previously named ''Betasphaerolipovirus''. Taxonomy The genus contains the following species: * '' Yingchengvirus HJIV1'' * '' Yingchengvirus NVIV1'' * '' Yingchengvirus SNJ1'' Morphology Viruses of this genus have tailless icosahedral virions with an internal lipid membrane located between the protein capsid and the circular double stranded DNA genome. Replication The temperate haloarchaeal virus SNJ1 displays lytic and lysogenic life cycles. During the lysogenic cycle, the virus resides in its host in the form of an extrachromosomal circular plasmid. Upon mitomycin C induction, large amounts of SNJ1 virions can be produced. SNJ1 genome replicates by the rolling-circle mechanism and is initiated by the virus-encoded RepA protein, which is homologous to the replication-initiation proteins of archaeal plasmids and bacterial transposases of the IS91 family insertion sequences Inser ...
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Yingchengvirus NVIV1
''Yingchengvirus'' is a genus of double stranded DNA viruses that infect haloarchaea. The genus was previously named ''Betasphaerolipovirus''. Taxonomy The genus contains the following species: * ''Yingchengvirus HJIV1'' * '' Yingchengvirus NVIV1'' * '' Yingchengvirus SNJ1'' Morphology Viruses of this genus have tailless icosahedral virions with an internal lipid membrane located between the protein capsid and the circular double stranded DNA genome. Replication The temperate haloarchaeal virus SNJ1 displays lytic and lysogenic life cycles. During the lysogenic cycle, the virus resides in its host in the form of an extrachromosomal circular plasmid. Upon mitomycin C induction, large amounts of SNJ1 virions can be produced. SNJ1 genome replicates by the rolling-circle mechanism and is initiated by the virus-encoded RepA protein, which is homologous to the replication-initiation proteins of archaeal plasmids and bacterial transposases of the IS91 family insertion sequences Insert ...
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Yingchengvirus SNJ1
''Yingchengvirus'' is a genus of double stranded DNA viruses that infect haloarchaea. The genus was previously named ''Betasphaerolipovirus''. Taxonomy The genus contains the following species: * ''Yingchengvirus HJIV1'' * ''Yingchengvirus NVIV1'' * '' Yingchengvirus SNJ1'' Morphology Viruses of this genus have tailless icosahedral virions with an internal lipid membrane located between the protein capsid and the circular double stranded DNA genome. Replication The temperate haloarchaeal virus SNJ1 displays lytic and lysogenic life cycles. During the lysogenic cycle, the virus resides in its host in the form of an extrachromosomal circular plasmid. Upon mitomycin C induction, large amounts of SNJ1 virions can be produced. SNJ1 genome replicates by the rolling-circle mechanism and is initiated by the virus-encoded RepA protein, which is homologous to the replication-initiation proteins of archaeal plasmids and bacterial transposases of the IS91 family insertion sequences Inserti ...
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Plasmid
A plasmid is a small, extrachromosomal DNA molecule within a cell that is physically separated from chromosomal DNA and can replicate independently. They are most commonly found as small circular, double-stranded DNA molecules in bacteria; however, plasmids are sometimes present in archaea and eukaryotic organisms. In nature, plasmids often carry genes that benefit the survival of the organism and confer selective advantage such as antibiotic resistance. While chromosomes are large and contain all the essential genetic information for living under normal conditions, plasmids are usually very small and contain only additional genes that may be useful in certain situations or conditions. Artificial plasmids are widely used as vectors in molecular cloning, serving to drive the replication of recombinant DNA sequences within host organisms. In the laboratory, plasmids may be introduced into a cell via transformation. Synthetic plasmids are available for procurement over the inter ...
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Mitomycin C
Mitomycin C is a mitomycin that is used as a chemotherapeutic agent by virtue of its antitumour activity. Medical uses It is given intravenously to treat upper gastro-intestinal cancers (e.g. esophageal carcinoma), anal cancers, and breast cancers, as well as by bladder instillation for superficial bladder tumours. Mitomycin C has also been used topically rather than intravenously in several areas. The first is cancers, particularly bladder cancers and intraperitoneal tumours. It is now well known that a single instillation of this agent within 6 hours of bladder tumor resection can prevent recurrence. The second is in eye surgery where mitomycin C 0.02% is applied topically to prevent scarring during glaucoma filtering surgery and to prevent haze after PRK or LASIK; mitomycin C has also been shown to reduce fibrosis in strabismus surgery. The third is in esophageal and tracheal stenosis where application of mitomycin C onto the mucosa immediately following dilatation ...
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Morphogenesis
Morphogenesis (from the Greek ''morphê'' shape and ''genesis'' creation, literally "the generation of form") is the biological process that causes a cell, tissue or organism to develop its shape. It is one of three fundamental aspects of developmental biology along with the control of tissue growth and patterning of cellular differentiation. The process controls the organized spatial distribution of cells during the embryonic development of an organism. Morphogenesis can take place also in a mature organism, such as in the normal maintenance of tissue by stem cells or in regeneration of tissues after damage. Cancer is an example of highly abnormal and pathological tissue morphogenesis. Morphogenesis also describes the development of unicellular life forms that do not have an embryonic stage in their life cycle. Morphogenesis is essential for the evolution of new forms. Morphogenesis is a mechanical process involving forces that generate mechanical stress, strain, and moveme ...
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Insertion Sequences
Insertion element (also known as an IS, an insertion sequence element, or an IS element) is a short DNA sequence that acts as a simple transposable element. Insertion sequences have two major characteristics: they are small relative to other transposable elements (generally around 700 to 2500 bp in length) and only code for proteins implicated in the transposition activity (they are thus different from other transposons, which also carry accessory genes such as antibiotic resistance genes). These proteins are usually the transposase which catalyses the enzymatic reaction allowing the IS to move, and also one regulatory protein which either stimulates or inhibits the transposition activity. The coding region in an insertion sequence is usually flanked by inverted repeats. For example, the well-known IS''911'' (1250 bp) is flanked by two 36bp inverted repeat extremities and the coding region has two genes partially overlapping ''orfA'' and ''orfAB'', coding the transposase (OrfAB) a ...
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