|
Sequerome
Sequerome is a web-based sequence profiling tool A sequence profiling tool in bioinformatics is a type of software that presents information related to a genetic sequence, gene name, or keyword input. Such tools generally take a query such as a DNA, RNA, or protein sequence or ‘keyword’ an ... for integrating the results of a BLAST sequence-alignment report with external research tools and servers that perform advanced sequence manipulations, and allowing the user to record the steps of such an analysis. Sequerome is a web-based Java Platform, Java tool that acts as a front-end to BLAST queries and provides simplified access to web-distributed resources for protein and nucleic acid analysis. Since its inception in 2005, the tool has been featured in ''Science (journal), Science''"A Bigger BLAST", NetWatchScienceVOL 309, 23 Sep 2005, p-1971 ,"Seq and Find" and officially linked to many bioinformatics portals around the globe. Description Sequerome has the following featu ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
SEQUEROME Display
Sequerome is a web-based sequence profiling tool for integrating the results of a BLAST sequence-alignment report with external research tools and servers that perform advanced sequence manipulations, and allowing the user to record the steps of such an analysis. Sequerome is a web-based Java tool that acts as a front-end to BLAST queries and provides simplified access to web-distributed resources for protein and nucleic acid analysis. Since its inception in 2005, the tool has been featured in ''Science''"A Bigger BLAST", NetWatchScienceVOL 309, 23 Sep 2005, p-1971 ,"Seq and Find" and officially linked to many bioinformatics portals around the globe. Description Sequerome has the following features: profiling Sequence alignment reports from BLAST by linking the results page to a panel of third party services, tabbed browsing allowing user to come back earlier operations, visit third party services to perform customized sequence manipulations, one-box any-format sequence input ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Sequence Profiling Tool
A sequence profiling tool in bioinformatics is a type of software that presents information related to a genetic sequence, gene name, or keyword input. Such tools generally take a query such as a DNA, RNA, or protein sequence or ‘keyword’ and search one or more databases for information related to that sequence. Summaries and aggregate results are provided in standardized format describing the information that would otherwise have required visits to many smaller sites or direct literature searches to compile. Many sequence profiling tools are software portals or gateways that simplify the process of finding information about a query in the large and growing number of bioinformatics databases. The access to these kinds of tools is either web based or locally downloadable executables. Introduction and usage The "post-genomics" era has given rise to a range of web-based tools and software to compile, organize, and deliver large amounts of primary sequence information, as well a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Sequence Profiling Tool
A sequence profiling tool in bioinformatics is a type of software that presents information related to a genetic sequence, gene name, or keyword input. Such tools generally take a query such as a DNA, RNA, or protein sequence or ‘keyword’ and search one or more databases for information related to that sequence. Summaries and aggregate results are provided in standardized format describing the information that would otherwise have required visits to many smaller sites or direct literature searches to compile. Many sequence profiling tools are software portals or gateways that simplify the process of finding information about a query in the large and growing number of bioinformatics databases. The access to these kinds of tools is either web based or locally downloadable executables. Introduction and usage The "post-genomics" era has given rise to a range of web-based tools and software to compile, organize, and deliver large amounts of primary sequence information, as well a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Open Reading Frame
In molecular biology, open reading frames (ORFs) are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a prokaryotic DNA sequence, where only one of the six possible reading frames will be "open" (the "reading", however, refers to the RNA produced by transcription of the DNA and its subsequent interaction with the ribosome in translation). Such an ORF may contain a start codon (usually AUG in terms of RNA) and by definition cannot extend beyond a stop codon (usually UAA, UAG or UGA in RNA). That start codon (not necessarily the first) indicates where translation may start. The transcription termination site is located after the ORF, beyond the translation stop codon. If transcription were to cease before the stop codon, an incomplete protein would be made during translation. In eukaryotic genes with multiple exons, introns are removed and exons are then joined together after transcription to yield the final ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Georgetown University
Georgetown University is a private university, private research university in the Georgetown (Washington, D.C.), Georgetown neighborhood of Washington, D.C. Founded by Bishop John Carroll (archbishop of Baltimore), John Carroll in 1789 as Georgetown College (Georgetown University), Georgetown College, the university has grown to comprise eleven Undergraduate education, undergraduate and Postgraduate education, graduate schools, including the School of Foreign Service, Walsh School of Foreign Service, McDonough School of Business, Georgetown University School of Medicine, Medical School, Georgetown University Law Center, Law School, and a Georgetown University in Qatar, campus in Qatar. The school's main campus, on a hill above the Potomac River, is identifiable by its flagship Healy Hall, a National Historic Landmark. The school was founded by and is affiliated with the Society of Jesus, and is the oldest Catholic institution of higher education in the United States, though the m ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Internet Explorer
Internet Explorer (formerly Microsoft Internet Explorer and Windows Internet Explorer, commonly abbreviated IE or MSIE) is a series of graphical user interface, graphical web browsers developed by Microsoft which was used in the Microsoft Windows, Windows line of operating systems (in Windows 11, Windows Server Insider Build 22463 and Windows Server Insider Build 25110, it is replaced by the Chromium (web browser), Chromium version of Microsoft Edge). Starting in 1995, It was first released as part of the add-on package Microsoft Plus!, Plus! for Windows 95 that year. Later versions were available as free downloads, or in-service packs, and included in the original equipment manufacturer (OEM) service releases of Windows 95 and later versions of Windows. Microsoft spent over per year on Internet Explorer in the late 1990s, with over 1,000 people involved in the project by 1999. New feature development for the browser was discontinued in 2016 in favor of new browser Microsoft Ed ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Java Servlet
A Jakarta Servlet (formerly Java Servlet) is a Java software component that extends the capabilities of a server. Although servlets can respond to many types of requests, they most commonly implement web containers for hosting web applications on web servers and thus qualify as a server-side servlet web API. Such web servlets are the Java counterpart to other dynamic web content technologies such as PHP and ASP.NET. Introduction A Jakarta Servlet processes or stores a Java class in Jakarta EE that conforms to the Jakarta Servlet API, a standard for implementing Java classes that respond to requests. Servlets could in principle communicate over any client–server protocol, but they are most often used with HTTP. Thus "servlet" is often used as shorthand for "HTTP servlet". Thus, a software developer may use a servlet to add dynamic content to a web server using the Java platform. The generated content is commonly HTML, but may be other data such as XML and more commonly, J ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Java Database Connectivity
Java Database Connectivity (JDBC) is an application programming interface (API) for the programming language Java, which defines how a client may access a database. It is a Java-based data access technology used for Java database connectivity. It is part of the Java Standard Edition platform, from Oracle Corporation. It provides methods to query and update data in a database, and is oriented toward relational databases. A JDBC-to-ODBC bridge enables connections to any ODBC-accessible data source in the Java virtual machine (JVM) host environment. History and implementation Sun Microsystems released JDBC as part of Java Development Kit (JDK) 1.1 on February 19, 1997. Since then it has been part of the Java Platform, Standard Edition (Java SE). The JDBC classes are contained in the Java package and . Starting with version 3.1, JDBC has been developed under the Java Community Process. JSR 54 specifies JDBC 3.0 (included in J2SE 1.4), JSR 114 specifies the JDBC Rowset additions, ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Jakarta Tomcat
Apache Tomcat (called "Tomcat" for short) is a free and open-source implementation of the Jakarta Servlet, Jakarta Expression Language, and WebSocket technologies. It provides a "pure Java" HTTP web server environment in which Java code can also run. Thus it's a Java web application server, although not a full JEE application server. Tomcat is developed and maintained by an open community of developers under the auspices of the Apache Software Foundation, released under the Apache License 2.0 license. Components Tomcat 4.x was released with Catalina (a servlet container), Coyote (an HTTP connector) and Jasper (a JSP engine). Catalina Catalina is Tomcat's servlet container. Catalina implements Sun Microsystems' specifications for servlet and JavaServer Pages (JSP). In Tomcat, a Realm element represents a "database" of usernames, passwords, and roles (similar to Unix groups) assigned to those users. Different implementations of Realm allow Catalina to be integrated into envir ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Java Virtual Machine
A Java virtual machine (JVM) is a virtual machine that enables a computer to run Java programs as well as programs written in other languages that are also compiled to Java bytecode. The JVM is detailed by a specification that formally describes what is required in a JVM implementation. Having a specification ensures interoperability of Java programs across different implementations so that program authors using the Java Development Kit (JDK) need not worry about idiosyncrasies of the underlying hardware platform. The JVM reference implementation is developed by the OpenJDK project as open source code and includes a JIT compiler called HotSpot. The commercially supported Java releases available from Oracle are based on the OpenJDK runtime. Eclipse OpenJ9 is another open source JVM for OpenJDK. JVM specification The Java virtual machine is an abstract (virtual) computer defined by a specification. It is a part of java runtime environment. The garbage-collection algorithm u ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
