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Plastocyanin Family Of Copper Binding Proteins
Plastocyanin/azurin family of copper-binding proteins (or blue (type 1) copper domain) is a family of small proteins that bind a single copper atom and that are characterised by an intense electronic absorption band near 600 nm (see copper proteins). The most well-known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as ''Methylobacterium extorquens'' or ''Paracoccus versutus'' (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from ''Chloroflexus aurantiacus''; blue copper protein from '' Alcaligenes faecalis''; cupredoxin (CPC) from '' Cucumis sativus'' (Cucumber) peelings; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from ''Natronomonas pharaonis'' (Natronobacterium pharaonis), a membrane ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Acta Crystallographica
''Acta Crystallographica'' is a series of peer-reviewed scientific journals, with articles centred on crystallography, published by the International Union of Crystallography (IUCr). Originally established in 1948 as a single journal called ''Acta Crystallographica'', there are now six independent ''Acta Crystallographica'' titles: *'' Acta Crystallographica Section A: Foundations and Advances'' *'' Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials'' *'' Acta Crystallographica Section C: Structural Chemistry'' *'' Acta Crystallographica Section D: Structural Biology'' *'' Acta Crystallographica Section E: Crystallographic Communications'' *'' Acta Crystallographica Section F: Structural Biology Communications'' ''Acta Crystallographica'' has been noted for the high quality of the papers that it produces, as well as the large impact that its papers have had on the field of crystallography. The current six journals form part of the journal portf ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Alcaligenes Faecalis
''Alcaligenes faecalis'' is a species of Gram-negative, rod-shaped bacteria commonly found in the environment. It was originally named for its first discovery in feces, but was later found to be common in soil, water, and environments in association with humans. While opportunistic infections do occur, the bacterium is generally considered nonpathogenic. When an opportunistic infection does occur, it is usually observed in the form of a urinary tract infection. ''A. faecalis'' has been used for the production of Amino acid#Non-standard amino acids, nonstandard amino acids. Description ''A. faecalis'' is a Gram-negative bacterium which appears bacillus (shape), rod-shaped and motile under a microscope. It is positive by the oxidase test and catalase test, but negative by the nitrate reductase test. It is Hemolysis (microbiology), alpha-hemolytic and obligate aerobe, requires oxygen. ''A. faecalis'' can be grown at 37 °C, and forms colonies that lack pigmentation. Metabolis ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Protein Domains
In molecular biology, a protein domain is a region of a protein's polypeptide chain that is self-stabilizing and that folds independently from the rest. Each domain forms a compact folded three-dimensional structure. Many proteins consist of several domains, and a domain may appear in a variety of different proteins. Molecular evolution uses domains as building blocks and these may be recombined in different arrangements to create proteins with different functions. In general, domains vary in length from between about 50 amino acids up to 250 amino acids in length. The shortest domains, such as zinc fingers, are stabilized by metal ions or disulfide bridges. Domains often form functional units, such as the calcium-binding EF hand domain of calmodulin. Because they are independently stable, domains can be "swapped" by genetic engineering between one protein and another to make chimeric proteins. Background The concept of the domain was first proposed in 1973 by Wetlaufer after ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Armoracia Rusticana
Horseradish (''Armoracia rusticana'', syn. ''Cochlearia armoracia'') is a perennial plant of the family Brassicaceae (which also includes mustard, wasabi, broccoli, cabbage, and radish). It is a root vegetable, cultivated and used worldwide as a spice and as a condiment. The species is probably native to southeastern Europe and western Asia. Description Horseradish grows up to tall, with hairless bright green unlobed leaves up to long that may be mistaken for docks (''Rumex''). It is cultivated primarily for its large, white, tapered root. The white four-petalled flowers are scented and are borne in dense panicles. Established plants may form extensive patches and may become invasive unless carefully managed. Intact horseradish root has little aroma. When cut or grated, enzymes from within the plant cells digest sinigrin (a glucosinolate) to produce allyl isothiocyanate (mustard oil), which irritates the mucous membranes of the sinuses and eyes. Once exposed to air or heat ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Rhus Vernicifera
''Toxicodendron vernicifluum'' (formerly ''Rhus verniciflua''), also known by the common name Chinese lacquer tree, is an Asian tree species of genus ''Toxicodendron'' native to China and the Indian subcontinent, and cultivated in regions of China, Japan and Korea. Other common names include ''Japanese lacquer tree'', ''Japanese sumac'', and ''varnish tree''. The trees are cultivated and tapped for their toxic sap, which is used as a highly durable lacquer to make Chinese, Japanese, and Korean lacquerware. The trees grow up to 20 metres tall with large leaves, each containing from 7 to 19 leaflets (most often 11–13). The sap contains the allergenic compound urushiol, which gets its name from this species' Japanese name urushi (); "urushi" is also used in English as a collective term for all kinds of Asian lacquerware made from the sap of this and related Asian tree species, as opposed to European "lacquer" or Japanning made from other materials. Urushiol is also the oil f ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Thiobacillus Ferrooxidans
''Acidithiobacillus'' is a genus of the ''Acidithiobacillia'' in the "Pseudomonadota". The genus includes acidophilic organisms capable of iron and/or sulfur oxidation. Like all ''"Pseudomonadota"'', ''Acidithiobacillus'' spp. are Gram-negative. They are also important generators of acid mine drainage, which is a major environmental problem around the world in mining. Genus ''Acidithiobacillus'' ''Acidithiobacillus'' are acidophilic obligate autotrophs (''Acidithiobacillus caldus'' can also grow mixotrophically) that use elementary sulfur, tetrathionate and ferrous iron as electron donors. They assimilate carbon from carbon dioxide using the transaldolase variant of the Calvin-Benson-Bassham cycle. The genus comprises motile, rod-shaped cells that can be isolated from low pH environments including low pH microenvironments on otherwise neutral mineral grains. Phylogeny The order Acidithiobacillales (i.e. ''Thermithiobacillus'') were formerly members of the ''Gammaproteobacteri ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Rusticyanin
Rusticyanin (RCN) is a copper protein with a type I copper center that plays an integral role in electron transfer. It can be extracted from the periplasm of the gram-negative bacterium Thiobacillus ferrooxidans (T. ferrooxidans), also known as Acidithiobacillus ferrooxidans (At. ferrooxidans). Rusticyanin is also found in the membrane-bound form in the surface of T. ferrooxidans. It is a part of an electron transfer chain for Fe(II) oxidation. Function As T. ferrooxidans can grow aerobically at pH values of 1.6 to 3.5, it obtains its energy for chemolithotrophic growth on soluble ferrous ions. Rusticyanin is involved in the respiratory oxidation of ferrous ions to ferric ions, producing three protons for every ferrous ion oxidized. The mechanism of electron transfer in the respiratory oxidation pathway of Fe2+ in T. ferrooxidans is still unclear despite decades of research in this area. However, the involvement of rusticyanin in shuttling electrons from a cytochrome c2 to a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Natronomonas Pharaonis
''Natronomonas'' (common abbreviation ''Nmn.''). is a genus of the Halobacteriaceae.See the NCBIbr>webpage on Natronomonas Data extracted from the Description and significance ''Natronomonas pharaonis'' is an aerobic, extremely haloalkaliphilic archaeon that grows optimally in 3.5M sodium chloride and at pH 8.5, but is sensitive to high magnesium concentrations. Genome structure The genome of ''Natronomonas pharaonis'' consists of three circular replicons, the chromosome which is 2,595,221 bp in length, a typical haloarchaeal 131-kb plasmid, and a unique multicopy 23-kb plasmid. Its chromosome has a high G + C content (63.4%). Also, a high proportion of acidic amino acids (average 19.3%) is found in the proteins of ''N. pharaonis'' which results in low isoelectric points (average pI 4.6). This is considered to be one of the adaptive features of haloarchaea, which are known to apply the salt-in strategy (high internal salt concentrations) in order to survive in their hyp ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Cucumis Sativus
Cucumber (''Cucumis sativus'') is a widely-cultivated creeping vine plant in the Cucurbitaceae family that bears usually cylindrical fruits, which are used as culinary vegetables.Cucumber " ''''. 2019. Considered an annual plant, there are three main varieties of cucumber—slicing, , and †... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Chloroflexus Aurantiacus
''Chloroflexus aurantiacus'' is a photosynthetic bacterium isolated from hot springs, belonging to the green non-sulfur bacteria. This organism is thermophilic and can grow at temperatures from 35 °C to 70 °C (94.998 to 158 °F). ''Chloroflexus aurantiacus'' can survive in the dark if oxygen is available. When grown in the dark, ''Chloroflexus aurantiacus'' has a dark orange color. When grown in sunlight it is dark green. The individual bacteria tend to form filamentous colonies enclosed in sheaths, which are known as trichomes. Physiology As a genus, ''Chloroflexus'' spp. are filamentous anoxygenic phototrophic (FAP) organisms that utilize type II photosynthetic reaction centers containing bacteriochlorophyll ''a'' similar to the purple bacteria, and light-harvesting chlorosomes containing bacteriochlorophyll ''c'' similar to green sulfur bacteria of the ''Chlorobiota''. Like other members of its phylum (''cf.'' Chloroflexota), the species stains Gram negative, ye ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Protein Family
A protein family is a group of evolutionarily related proteins. In many cases, a protein family has a corresponding gene family, in which each gene encodes a corresponding protein with a 1:1 relationship. The term "protein family" should not be confused with Family (biology), family as it is used in taxonomy. Proteins in a family descend from a common ancestor and typically have similar protein structure, three-dimensional structures, functions, and significant Sequence homology, sequence similarity. The most important of these is sequence similarity (usually amino-acid sequence), since it is the strictest indicator of homology and therefore the clearest indicator of common ancestry. A fairly well developed framework exists for evaluating the significance of similarity between a group of sequences using sequence alignment methods. Proteins that do not share a common ancestor are very unlikely to show statistically significant sequence similarity, making sequence alignment a powerf ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Paracoccus Versutus
''Paracoccus'' is a genus of bacteria in the family Rhodobacteraceae.See the NCBIbr>webpage on Paracoccus Data extracted from the Species Accepted Species The following species have been effectively and validly published: * '' Paracoccus acridae'' Zhang ''et al''. 2016 * '' Paracoccus aeridis'' Rai ''et al''. 2020 * '' Paracoccus aerius'' Xue ''et al''. 2017 * '' Paracoccus aestuarii'' Roh ''et al''. 2009 * '' Paracoccus aestuariivivens'' Park ''et al''. 2016 * '' Paracoccus alcaliphilus'' Urakami ''et al''. 1989 * '' Paracoccus alimentarius'' Kim ''et al''. 2018 * '' Paracoccus alkanivorans'' Zhang ''et al''. 2020 * '' Paracoccus alkenifer'' Lipski ''et al''. 1998 * '' Paracoccus aminophilus'' Urakami ''et al''. 1990 * '' Paracoccus aminovorans'' Urakami ''et al''. 1990 * '' Paracoccus amoyensis'' Lyu ''et al''. 2021 * '' Paracoccus angustae'' Sun ''et al''. 2015 * '' Paracoccus aurantiacus'' Ye ''et al''. 2020 * '' Paracoccus bengalensis'' Ghosh ''et al''. 2006 * '' Paracocc ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
