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OnlineHPC
The OnlineHPC was a free public web service that supplied tools to deal with high performance computers and online workflow editor. OnlineHPC allowed users to design and execute workflows using the online workflow designer and to work with high performance computers – clusters and clouds. Access to high performance resources was available as directly from the service user interface, as from workflow components. The workflow engine of the OnlineHPC service was Apache Taverna, Taverna as traditionally used for Scientific workflow system, scientific workflow execution in such domains, as bioinformatics, cheminformatics, medicine, astronomy, social sciences, social science, music, and digital preservation. History OnlineHPC was started at the Institute for Information Transmission Problems in 2012 as a project for the institute’s researchers whose work need access to computer clusters and who are not professional programmers. The project motivation is that there is a gap between ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Scientific Workflow System
A scientific workflow system is a specialized form of a workflow management system designed specifically to compose and execute a series of computational or data manipulation steps, or workflow, in a scientific application. Applications Distributed scientists can collaborate on conducting large scale scientific experiments and knowledge discovery applications using distributed systems of computing resources, data sets, and devices. Scientific workflow systems play an important role in enabling this vision. More specialized scientific workflow systems provide a visual programming front end enabling users to easily construct their applications as a visual graph by connecting nodes together, and tools have also been developed to build such applications in a platform-independent manner. Each directed edge in the graph of a workflow typically represents a connection from the output of one application to the input of the next. A sequence of such edges may be called a pipeline. A bioinfo ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Apache Taverna
Apache Taverna was an open source software tool for designing and executing workflows, initially created by the myGrid project under the name ''Taverna Workbench'', then a project under the Apache incubator. Taverna allowed users to integrate many different software components, including WSDL SOAP or REST Web services, such as those provided by the National Center for Biotechnology Information, the European Bioinformatics Institute, the DNA Databank of Japan (DDBJ), SoapLab, BioMOBY and EMBOSS. The set of available services was not finite and users could import new service descriptions into the Taverna Workbench. Taverna Workbench provided a desktop authoring environment and enactment engine for scientific workflows. The Taverna workflow engine was also available separately, as a Java API, command line tool or as a server. Taverna was used by users in many domains, such as bioinformatics, cheminformatics, medicine, astronomy, social science, music, and digital preservation. Some ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Linux
Linux ( or ) is a family of open-source Unix-like operating systems based on the Linux kernel, an operating system kernel first released on September 17, 1991, by Linus Torvalds. Linux is typically packaged as a Linux distribution, which includes the kernel and supporting system software and libraries, many of which are provided by the GNU Project. Many Linux distributions use the word "Linux" in their name, but the Free Software Foundation uses the name "GNU/Linux" to emphasize the importance of GNU software, causing some controversy. Popular Linux distributions include Debian, Fedora Linux, and Ubuntu, the latter of which itself consists of many different distributions and modifications, including Lubuntu and Xubuntu. Commercial distributions include Red Hat Enterprise Linux and SUSE Linux Enterprise. Desktop Linux distributions include a windowing system such as X11 or Wayland, and a desktop environment such as GNOME or KDE Plasma. Distributions intended for ser ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
High Performance Computing
High-performance computing (HPC) uses supercomputers and computer clusters to solve advanced computation problems. Overview HPC integrates systems administration (including network and security knowledge) and parallel programming into a multidisciplinary field that combines digital electronics, computer architecture, system software, programming languages, algorithms and computational techniques. HPC technologies are the tools and systems used to implement and create high performance computing systems. Recently, HPC systems have shifted from supercomputing to computing clusters and grids. Because of the need of networking in clusters and grids, High Performance Computing Technologies are being promoted by the use of a collapsed network backbone, because the collapsed backbone architecture is simple to troubleshoot and upgrades can be applied to a single router as opposed to multiple ones. The term is most commonly associated with computing used for scientific research or com ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Secure Shell
The Secure Shell Protocol (SSH) is a cryptographic network protocol for operating network services securely over an unsecured network. Its most notable applications are remote login and command-line execution. SSH applications are based on a client–server architecture, connecting an SSH client instance with an SSH server. SSH operates as a layered protocol suite comprising three principal hierarchical components: the ''transport layer'' provides server authentication, confidentiality, and integrity; the ''user authentication protocol'' validates the user to the server; and the ''connection protocol'' multiplexes the encrypted tunnel into multiple logical communication channels. SSH was designed on Unix-like operating systems, as a replacement for Telnet and for unsecured remote Unix shell protocols, such as the Berkeley Remote Shell (rsh) and the related rlogin and rexec protocols, which all use insecure, plaintext transmission of authentication tokens. SSH was first de ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Beanshell
BeanShell is a small, free, embeddable Java source interpreter with object scripting language features, written in Java. It runs in the Java Runtime Environment (JRE), dynamically executes standard Java syntax and extends it with common scripting conveniences such as loose types, commands, and method closures, like those in Perl and JavaScript. Features While BeanShell allows its users to define functions that can be called from within a script, its underpinning philosophy has been to not pollute its syntax with too many extensions and "syntactic sugar", thereby ensuring that code written for a Java compiler can usually be executed interpretively by BeanShell without any changes and, almost just as much, vice versa. This makes BeanShell a popular testing and debugging tool for the Java virtual machine (JVM) platform. BeanShell supports scripted objects as simple method closures like those in Perl and JavaScript. BeanShell is an open source project and has been incorporated in ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
R (programming Language)
R is a programming language for statistical computing and graphics supported by the R Core Team and the R Foundation for Statistical Computing. Created by statisticians Ross Ihaka and Robert Gentleman, R is used among data miners, bioinformaticians and statisticians for data analysis and developing statistical software. Users have created packages to augment the functions of the R language. According to user surveys and studies of scholarly literature databases, R is one of the most commonly used programming languages used in data mining. R ranks 12th in the TIOBE index, a measure of programming language popularity, in which the language peaked in 8th place in August 2020. The official R software environment is an open-source free software environment within the GNU package, available under the GNU General Public License. It is written primarily in C, Fortran, and R itself (partially self-hosting). Precompiled executables are provided for various operating systems. R ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BioMart
BioMart is a community-driven project to provide a single point of access to distributed research data. The BioMart project contributes open source software and data services to the international scientific community. Although the BioMart software is primarily used by the biomedical research community, it is designed in such a way that any type of data can be incorporated into the BioMart framework. The BioMart project originated at the European Bioinformatics Institute as a data management solution for the Human Genome Project. Since then, BioMart has grown to become a multi-institute collaboration involving various database projects on five continents. Software BioMart is a freely available, open-source, federated database system that provides unified access to disparate, geographically distributed data sources. BioMart allows databases hosted on different servers to be presented seamlessly to users, facilitating collaborative projects. BioMart contains several levels of que ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
REST
Rest or REST may refer to: Relief from activity * Sleep ** Bed rest * Kneeling * Lying (position) * Sitting * Squatting position Structural support * Structural support ** Rest (cue sports) ** Armrest ** Headrest ** Footrest Arts and entertainment Music * Rest (music), a pause in a piece of music * Rest (band), Irish instrumental doom metal band * ''Rest'' (Gregor Samsa album), 2008 * ''Rest'' (Charlotte Gainsbourg album), 2017 * "Rest", a 1990 song by Green Day from ''39/Smooth'' * "Rest", a 2014 song by Kutless from '' Glory'' * "Rest", a 2015 song by Matt Maher from '' Saints and Sinners'' * "Rest", a 2012 song by Michael Kiwanuka from '' Home Again'' * "Rest", a 2000 song by Skillet from ''Invincible'' * "Rest", a 2009 song by The Temper Trap from '' Conditions'' * "Rest", tune name for a setting of "Dear Lord and Father of Mankind" Painting * ''Repose'' (painting), by Manet, c.1871 * ''Le Repos'' (Picasso), 1932 * ''Rest'' (Bouguereau), 1879 Businesses and organis ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
WSDL
The Web Services Description Language (WSDL ) is an XML-based interface description language that is used for describing the functionality offered by a web service. The acronym is also used for any specific WSDL description of a web service (also referred to as a ''WSDL file''), which provides a machine-readable description of how the service can be called, what parameters it expects, and what data structures it returns. Therefore, its purpose is roughly similar to that of a type signature in a programming language. The latest version of WSDL, which became a W3C recommendation in 2007, is WSDL 2.0. The meaning of the acronym has changed from version 1.1 where the "D" stood for "Definition". Description The WSDL describes services as collections of network Communication endpoint, endpoints, or Port (computer networking), ports. The WSDL specification provides an XML File format, format for documents for this purpose. The abstract definitions of ports and messages are separated f ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
SOAP
Soap is a salt of a fatty acid used in a variety of cleansing and lubricating products. In a domestic setting, soaps are surfactants usually used for washing, bathing, and other types of housekeeping. In industrial settings, soaps are used as thickeners, components of some lubricants, and precursors to catalysts. When used for cleaning, soap solubilizes particles and grime, which can then be separated from the article being cleaned. In hand washing, as a surfactant, when lathered with a little water, soap kills microorganisms by disorganizing their membrane lipid bilayer and denaturing their proteins. It also emulsifies oils, enabling them to be carried away by running water. Soap is created by mixing fats and oils with a base. A similar process is used for making detergent which is also created by combining chemical compounds in a mixer. Humans have used soap for millennia. Evidence exists for the production of soap-like materials in ancient Babylon around 2800 ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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