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Non-coding Sequence
Non-coding DNA (ncDNA) sequences are components of an organism's DNA that do not encode protein sequences. Some non-coding DNA is transcribed into functional non-coding RNA molecules (e.g. transfer RNA, microRNA, piRNA, ribosomal RNA, and regulatory RNAs). Other functional regions of the non-coding DNA fraction include regulatory sequences that control gene expression; scaffold attachment regions; origins of DNA replication; centromeres; and telomeres. Some non-coding regions appear to be mostly nonfunctional such as introns, pseudogenes, intergenic DNA, and fragments of transposons and viruses. Fraction of non-coding genomic DNA In bacteria, the coding regions typically take up 88 % of the genome. The remaining 12 % consists largely of non-coding genes and regulatory sequences, which means that almost all of the bacterial genome has a function. The amount of coding DNA in eukaryrotes is usually a much smaller fraction of the genome because eukaryotic genomes conta ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genetic Code
The genetic code is the set of rules used by living cells to translate information encoded within genetic material ( DNA or RNA sequences of nucleotide triplets, or codons) into proteins. Translation is accomplished by the ribosome, which links proteinogenic amino acids in an order specified by messenger RNA (mRNA), using transfer RNA (tRNA) molecules to carry amino acids and to read the mRNA three nucleotides at a time. The genetic code is highly similar among all organisms and can be expressed in a simple table with 64 entries. The codons specify which amino acid will be added next during protein biosynthesis. With some exceptions, a three-nucleotide codon in a nucleic acid sequence specifies a single amino acid. The vast majority of genes are encoded with a single scheme (see the RNA codon table). That scheme is often referred to as the canonical or standard genetic code, or simply ''the'' genetic code, though variant codes (such as in mitochondria) exist. History Effor ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Transposons
A transposable element (TE, transposon, or jumping gene) is a nucleic acid sequence in DNA that can change its position within a genome, sometimes creating or reversing mutations and altering the cell's genetic identity and genome size. Transposition often results in duplication of the same genetic material. Barbara McClintock's discovery of them earned her a Nobel Prize in 1983. Its importance in personalized medicine is becoming increasingly relevant, as well as gaining more attention in data analytics given the difficulty of analysis in very high dimensional spaces. Transposable elements make up a large fraction of the genome and are responsible for much of the C-value, mass of DNA in a eukaryotic cell. Although TEs are selfish genetic elements, many are important in genome function and evolution. Transposons are also very useful to researchers as a means to alter DNA inside a living organism. There are at least two classes of TEs: Class I TEs or retrotransposons generally ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Non-coding RNA
A non-coding RNA (ncRNA) is a functional RNA molecule that is not translated into a protein. The DNA sequence from which a functional non-coding RNA is transcribed is often called an RNA gene. Abundant and functionally important types of non-coding RNAs include transfer RNAs (tRNAs) and ribosomal RNAs (rRNAs), as well as small RNAs such as microRNAs, siRNAs, piRNAs, snoRNAs, snRNAs, exRNAs, scaRNAs and the long ncRNAs such as Xist and HOTAIR. The number of non-coding RNAs within the human genome is unknown; however, recent transcriptomic and bioinformatic studies suggest that there are thousands of non-coding transcripts. Many of the newly identified ncRNAs have not been validated for their function. There is no consensus in the literature on how much of non-coding transcription is functional. Some researchers have argued that many ncRNAs are non-functional (sometimes referred to as "junk RNA"), spurious transcriptions. Others, however, disagree, arguing instead that many ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gene
In biology, the word gene (from , ; "...Wilhelm Johannsen coined the word gene to describe the Mendelian units of heredity..." meaning ''generation'' or ''birth'' or ''gender'') can have several different meanings. The Mendelian gene is a basic unit of heredity and the molecular gene is a sequence of nucleotides in DNA that is transcribed to produce a functional RNA. There are two types of molecular genes: protein-coding genes and noncoding genes. During gene expression, the DNA is first copied into RNA. The RNA can be directly functional or be the intermediate template for a protein that performs a function. The transmission of genes to an organism's offspring is the basis of the inheritance of phenotypic traits. These genes make up different DNA sequences called genotypes. Genotypes along with environmental and developmental factors determine what the phenotypes will be. Most biological traits are under the influence of polygenes (many different genes) as well as gen ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bladderwort
''Utricularia'', commonly and collectively called the bladderworts, is a genus of carnivorous plants consisting of approximately 233 species (precise counts differ based on classification opinions; a 2001 publication lists 215 species).Salmon, Bruce (2001). ''Carnivorous Plants of New Zealand''. Ecosphere Publications. They occur in fresh water and wet soil as terrestrial or aquatic species across every continent except Antarctica. ''Utricularia'' are cultivated for their flowers, which are often compared with those of snapdragons and orchids, especially amongst carnivorous plant enthusiasts. All ''Utricularia'' are carnivorous and capture small organisms by means of bladder-like traps. Terrestrial species tend to have tiny traps that feed on minute prey such as protozoa and rotifers swimming in water-saturated soil. The traps can range in size from .Taylor, Peter. (1989). ''The genus Utricularia - a taxonomic monograph''. Kew Bulletin Additional Series XIV: London. Aquatic spec ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Utricularia Gibba
''Utricularia gibba'', commonly known as the humped or floating bladderwort, is a small, mat-forming species of carnivorous aquatic bladderwort. It is found on all continents except Antarctica. ''U. gibba'' has an exceptionally small genome for a plant, despite having a typical number of genes. The sequencing of its DNA revealed only 3% non-coding material. Description ''Utricularia gibba'' is an aquatic carnivorous plant that belongs to the genus ''Utricularia'', or bladderworts. The specific epithet ''gibba'' is Latin for "hump" or "swelling" – a reference to the inflated base of the lower lip of the corolla.Bruce Salmon (2001) ''"Carnivorous Plants of New Zealand"'' Ecosphere Publications It is a small- to medium-sized aquatic plant that can either be affixed to the substrate in shallow water or free-floating in the water column, however it will likely flower more if supported by a substrate beneath shallow water. It forms mats of criss-crossing, branching, thread-like st ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Takifugu
''Takifugu'' is a genus of pufferfish, often better known by the Japanese name . There are 25 species belonging to the genus ''Takifugu'' and most of these are native to salt and brackish waters of the northwest Pacific, but a few species are found in freshwater of Asia or more widely in the Indo-Pacific region. Their diet consists mostly of algae, molluscs, invertebrates and sometimes crustaceans. The fish defend themselves by inflating their bodies to several times normal size and by poisoning their predators. These defenses allow the fish to actively explore their environment without much fear of being attacked. The fish is highly toxic, but despite this—or perhaps because of it—it is considered a delicacy in Japan. The fish contains lethal amounts of the poison tetrodotoxin in the internal organs, especially the liver and the ovaries, but also in the skin and the testes. Therefore, only specially licensed chefs can prepare and sell fugu to the public, and the consumpt ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Pufferfish
Tetraodontidae is a family of primarily marine and estuarine fish of the order Tetraodontiformes. The family includes many familiar species variously called pufferfish, puffers, balloonfish, blowfish, blowies, bubblefish, globefish, swellfish, toadfish, toadies, toadle, honey toads, Haaris Anwar fish, sugar toads, and sea squab. They are morphologically similar to the closely related porcupinefish, which have large external spines (unlike the thinner, hidden spines of the Tetraodontidae, which are only visible when the fish have puffed up). The scientific name refers to the four large teeth, fused into an upper and lower plate, which are used for crushing the hard shells of crustaceans and mollusks, their natural prey. The majority of pufferfish species are toxic and some are among the most poisonous vertebrates in the world. In certain species, the internal organs, such as the liver, and sometimes the skin, contain tetrodotoxin, and are highly toxic to most animals when ea ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genome Size
Genome size is the total amount of DNA contained within one copy of a single complete genome. It is typically measured in terms of mass in picograms (trillionths (10−12) of a gram, abbreviated pg) or less frequently in daltons, or as the total number of nucleotide base pairs, usually in megabases (millions of base pairs, abbreviated Mb or Mbp). One picogram is equal to 978 megabases. In diploid organisms, genome size is often used interchangeably with the term C-value. An organism's complexity is not directly proportional to its genome size; total DNA content is widely variable between biological taxa. Some single-celled organisms have much more DNA than humans, for reasons that remain unclear (see non-coding DNA and C-value enigma). Origin of the term The term "genome size" is often erroneously attributed to a 1976 paper by Ralph Hinegardner, even in discussions dealing specifically with terminology in this area of research (e.g., Greilhuber 2005). Notably, Hinegardner u ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Polychaos Dubium
''Polychaos dubium'' is a freshwater amoeboid and one of the larger species of single-celled eukaryote. Like other amoebozoans, ''P. dubium'' moves by means of temporary projections called pseudopods. ''P. dubium'' reportedly has one of the largest genome size of any organism known, though the authors of a 2004 study suggest treating that measurement with caution. ''Polychaos dubium'' was previously known as ''Amoeba dubia''. The author who named the species later recognized it as different from species of ''Amoeba'', and so designated it the type species of the genus '' Polychaos''. Unlike species of ''Amoeba'', ''P. dubium'' lacks longitudinal ridges on its pseudopods. Physical characteristics A few characteristics distinguish ''Polychaos dubium'' from other species of ''Polychaos''. The crystals floating in its cytoplasm take the shape of flat bipyramids, flat plates, or clustered platelets. The nucleus is ellipsoid in shape, has granules next to the membrane, and lac ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
G-value Paradox
The G-value paradox arises from the lack of correlation between the number of protein-coding genes among eukaryotes and their relative biological complexity. The microscopic nematode ''Caenorhabditis elegans'', for example, is composed of only a thousand cells but has about the same number of genes as a human. Researchers suggest resolution of the paradox may lie in mechanisms such as alternative splicing and complex gene regulation that make the genes of humans and other complex eukaryotes relatively more productive. DNA and biological complexity The lack of correlation between the morphological complexity of eukaryotes and the amount of genetic information they carry has long puzzled researchers. The sheer amount of DNA in an organism, measured by the mass of DNA present in the nucleus or the number of constituent nucleotide pairs, varies by several orders of magnitude among eukaryotes and often is unrelated to an organism’s size or developmental complexity. One amoeba has 200 ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
C-value
C-value is the amount, in picograms, of DNA contained within a haploid nucleus (e.g. a gamete) or one half the amount in a diploid somatic cell of a eukaryotic organism. In some cases (notably among diploid organisms), the terms C-value and genome size are used interchangeably; however, in polyploids the C-value may represent two or more genomes contained within the same nucleus. Greilhuber ''et al.'' have suggested some new layers of terminology and associated abbreviations to clarify this issue, but these somewhat complex additions are yet to be used by other authors. Origin of the term Many authors have incorrectly assumed that the 'C' in "C-value" refers to "characteristic", "content", or "complement". Even among authors who have attempted to trace the origin of the term, there had been some confusion because Hewson Swift did not define it explicitly when he coined it in 1950. In his original paper, Swift appeared to use the designation "1C value", "2C value", etc., in re ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
