Maximal Pair
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Maximal Pair
In computer science, a maximal pair within a string is a pair of matching substrings that are maximal, where "maximal" means that it is not possible to make a longer matching pair by extending the range of both substrings to the left or right. Example For example, in this table, the substrings at indices 2 to 4 (in red) and indices 6 to 8 (in blue) are a maximal pair, because they contain identical characters (abc), and they have different characters to the left (x at index 1 and y at index 5) and different characters to the right (y at index 5 and w at index 9). Similarly, the substrings at indices 6 to 8 (in blue) and indices 10 to 12 (in green) are a maximal pair. However, the substrings at indices 2 to 4 (in red) and indices 10 to 12 (in green) are not a maximal pair, as the character y follows both substrings, and so they can be extended to the right to make a longer pair. Formal definition Formally, a maximal pair of substrings with starting positions p_1 and p_2 respec ...
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Computer Science
Computer science is the study of computation, information, and automation. Computer science spans Theoretical computer science, theoretical disciplines (such as algorithms, theory of computation, and information theory) to Applied science, applied disciplines (including the design and implementation of Computer architecture, hardware and Software engineering, software). Algorithms and data structures are central to computer science. The theory of computation concerns abstract models of computation and general classes of computational problem, problems that can be solved using them. The fields of cryptography and computer security involve studying the means for secure communication and preventing security vulnerabilities. Computer graphics (computer science), Computer graphics and computational geometry address the generation of images. Programming language theory considers different ways to describe computational processes, and database theory concerns the management of re ...
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Tuple
In mathematics, a tuple is a finite sequence or ''ordered list'' of numbers or, more generally, mathematical objects, which are called the ''elements'' of the tuple. An -tuple is a tuple of elements, where is a non-negative integer. There is only one 0-tuple, called the ''empty tuple''. A 1-tuple and a 2-tuple are commonly called a singleton and an ordered pair, respectively. The term ''"infinite tuple"'' is occasionally used for ''"infinite sequences"''. Tuples are usually written by listing the elements within parentheses "" and separated by commas; for example, denotes a 5-tuple. Other types of brackets are sometimes used, although they may have a different meaning. An -tuple can be formally defined as the image of a function that has the set of the first natural numbers as its domain. Tuples may be also defined from ordered pairs by a recurrence starting from an ordered pair; indeed, an -tuple can be identified with the ordered pair of its first elements and its t ...
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Suffix Tree
In computer science, a suffix tree (also called PAT tree or, in an earlier form, position tree) is a compressed trie containing all the suffixes of the given text as their keys and positions in the text as their values. Suffix trees allow particularly fast implementations of many important string operations. The construction of such a tree for the string S takes time and space linear in the length of S. Once constructed, several operations can be performed quickly, such as locating a substring in S, locating a substring if a certain number of mistakes are allowed, and locating matches for a regular expression pattern. Suffix trees also provided one of the first linear-time solutions for the longest common substring problem. These speedups come at a cost: storing a string's suffix tree typically requires significantly more space than storing the string itself. History The concept was first introduced by . Rather than the suffix S ..n/math>, Weiner stored in his trie the ''prefix ...
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Suffix Array
In computer science, a suffix array is a sorted array of all suffixes of a string. It is a data structure used in, among others, full-text indices, data-compression algorithms, and the field of bibliometrics. Suffix arrays were introduced by as a simple, space efficient alternative to suffix trees. They had independently been discovered by Gaston Gonnet in 1987 under the name ''PAT array'' . gave the first in-place \mathcal(n) time suffix array construction algorithm that is optimal both in time and space, where ''in-place'' means that the algorithm only needs \mathcal(1) additional space beyond the input string and the output suffix array. Enhanced suffix arrays (ESAs) are suffix arrays with additional tables that reproduce the full functionality of suffix trees preserving the same time and memory complexity. A sorted array of only some (rather than all) suffixes of a string is called a sparse suffix array. Definition Let S=S ..S /math> be an n-string and let S ,j/math ...
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String (computer Science)
In computer programming, a string is traditionally a sequence of character (computing), characters, either as a literal (computer programming), literal constant or as some kind of Variable (computer science), variable. The latter may allow its elements to be Immutable object, mutated and the length changed, or it may be fixed (after creation). A string is often implemented as an array data structure of bytes (or word (computer architecture), words) that stores a sequence of elements, typically characters, using some character encoding. More general, ''string'' may also denote a sequence (or List (abstract data type), list) of data other than just characters. Depending on the programming language and precise data type used, a variable (programming), variable declared to be a string may either cause storage in memory to be statically allocated for a predetermined maximum length or employ dynamic allocation to allow it to hold a variable number of elements. When a string appears lit ...
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