MDGRAPE-4
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MDGRAPE-4
MDGRAPE-4 is a supercomputer under development at the RIKEN Quantitative Biology Center (QBiC) in Suita, Osaka, Japan. See also *RIKEN MDGRAPE-3 MDGRAPE-3 is an ultra-high performance petascale supercomputer system developed by the Riken research institute in Japan. It is a special purpose system built for molecular dynamics simulations, especially protein structure prediction. MDGRAPE- ... References Riken Supercomputers Supercomputing in Japan molecular dynamics {{compu-book-stub ...
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RIKEN Quantitative Biology Center
The Quantitative Biology Center (QBiC) is a Strategic Research Center of the Japanese national research and development institute, Riken. In November 2014, they succeeded in making a translucent mouse in order to see its internal organs more clearly. Overview QBiC is a systems biology research center. The center is led by director Toshio Yanagida and is divided into three research cores. * Cell Dynamics Research Core * Computational Biology Research Core * Cell Design Research Core Research Cores Cell Dynamics Research Core The Cell Dynamics Research Core houses the Laboratory for Cell Polarity Regulation, led by Yasushi Okada. Okada reported the first visualization of Mitochondrial Derived Vesicles (MDV) from mitochondrial protrusions using ultrafast super-resolution fluorescence imaging with spinning disk confocal microscope optics. This core also includes Shuichi Onami's Laboratory for Developmental Dynamics creator of the Biological Dynamics Markup Language ( BDML). Th ...
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RIKEN MDGRAPE-3
MDGRAPE-3 is an ultra-high performance petascale supercomputer system developed by the Riken research institute in Japan. It is a special purpose system built for molecular dynamics simulations, especially protein structure prediction. MDGRAPE-3 consists of 201 units of 24 custom MDGRAPE-3 chips (4,824 total), plus additional dual-core Intel Xeon processors (codename "Dempsey") which serve as host machines. In June 2006 Riken announced its completion,Riken press release, Completion of a one-petaflops computer system for simulation of molecular dynamics' achieving the petaFLOPS level of floating point arithmetic performance. This was more than three times faster than the 2006 version of the IBM Blue Gene/L system, which then led the TOP500 list of supercomputers at 0.28 petaFLOPS. Because it's not a general-purpose machine capable of running the LINPACK benchmarks, MDGRAPE-3 does not qualify for the TOP500 list. See also * Supercomputing in Japan * MDGRAPE-4 MDGRAPE-4 is ...
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Supercomputer
A supercomputer is a computer with a high level of performance as compared to a general-purpose computer. The performance of a supercomputer is commonly measured in floating-point operations per second ( FLOPS) instead of million instructions per second (MIPS). Since 2017, there have existed supercomputers which can perform over 1017 FLOPS (a hundred quadrillion FLOPS, 100 petaFLOPS or 100 PFLOPS). For comparison, a desktop computer has performance in the range of hundreds of gigaFLOPS (1011) to tens of teraFLOPS (1013). Since November 2017, all of the world's fastest 500 supercomputers run on Linux-based operating systems. Additional research is being conducted in the United States, the European Union, Taiwan, Japan, and China to build faster, more powerful and technologically superior exascale supercomputers. Supercomputers play an important role in the field of computational science, and are used for a wide range of computationally intensive tasks in var ...
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Suita
is a city located in northern Osaka Prefecture, Japan. As of October 1, 2016, the city has an estimated population of 378,322 and a population density of 9,880 persons per km². The total area is 36.11 km². The city was founded on April 1, 1940, and was the site of Expo '70, a World's Fair held in 1970. The J-League soccer club Gamba Osaka plays at Suita City Football Stadium. It is connected to central by Hankyu Railway, West Japan Railway Company and the Osaka Municipal Subway. The Osaka Monorail also passes through the area, connecting the city to Osaka, the Expo Commemoration Park and Osaka International Airport. Surrounding municipalities *Osaka Prefecture **Osaka (Yodogawa-ku, Higashiyodogawa-ku) ** Settsu ** Ibaraki ** Minoh ** Toyonaka Economy Major companies and industries * Asahi Suita Brewery * Headquarters of SNK, the producer of Neo Geo arcade boards and games * Mister Donut, a fast food franchise that offers doughnuts, coffee, muffins and pastries. Edu ...
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Supercomputers
A supercomputer is a computer with a high level of performance as compared to a general-purpose computer. The performance of a supercomputer is commonly measured in floating-point operations per second (FLOPS) instead of million instructions per second (MIPS). Since 2017, there have existed supercomputers which can perform over 1017 FLOPS (a hundred quadrillion FLOPS, 100 petaFLOPS or 100 PFLOPS). For comparison, a desktop computer has performance in the range of hundreds of gigaFLOPS (1011) to tens of teraFLOPS (1013). Since November 2017, all of the world's fastest 500 supercomputers run on Linux-based operating systems. Additional research is being conducted in the United States, the European Union, Taiwan, Japan, and China to build faster, more powerful and technologically superior exascale supercomputers. Supercomputers play an important role in the field of computational science, and are used for a wide range of computationally intensive tasks in variou ...
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Supercomputing In Japan
Japan operates a number of centers for supercomputing which hold world records in speed, with the K computer becoming the world's fastest in June 2011. and Fugaku took the lead in June 2020, and furthered it, as of November 2020, to 3 times faster than number two computer. The K computer's performance was impressive, according to professor Jack Dongarra who maintains the TOP500 list of supercomputers, and it surpassed its next 5 competitors combined. The K computer cost US$10 million a year to operate. Previous records Japan's entry into supercomputing began in the early 1980s. In 1982, Osaka University's LINKS-1 Computer Graphics System used a massively parallel processing architecture, with 514 microprocessors, including 257 Zilog Z8000, Zilog Z8001 Central processing unit, control processors and 257 iAPX IAPX 86, 86/20 Floating-point unit, floating-point processors. It was mainly used for rendering realistic 3D computer graphics, 3D computer graphics. It was the world's most ...
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