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LSID
Life Science Identifiers are a way to name and locate pieces of information on the web. Essentially, an LSID is a unique identifier for some data, and the LSID protocol specifies a standard way to locate the data (as well as a standard way of describing that data). They are a little like DOIs used by many publishers. An LSID is represented as a uniform resource name (URN) with the following format: * urn:lsid::: The ''lsid:'' namespace, however, is not registered with the Internet Assigned Numbers Authority (IANA), and so these are not strictly URNs or URIs. LSIDs may be resolved in URLs, e.g. http://zoobank.org/urn:lsid:zoobank.org:pub:CDC8D258-8F57-41DC-B560-247E17D3DC8C Controversy over the use of LSIDs There has been a lot of interest in LSIDs in both the bioinformatics and the biodiversity communities, with the latter continuing to use them as a way of identifying species in global catalogues. However, more recently, as understanding has increased of how HTTP URIs can perfo ...
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Uniform Resource Name
A Uniform Resource Name (URN) is a Uniform Resource Identifier (URI) that uses the scheme. URNs are globally unique persistent identifiers assigned within defined namespaces so they will be available for a long period of time, even after the resource which they identify ceases to exist or becomes unavailable. URNs cannot be used to directly locate an item and need not be resolvable, as they are simply templates that another parser may use to find an item. URIs, URNs, and URLs URNs were originally conceived to be part of a three-part information architecture for the Internet, along with Uniform Resource Locators (URLs) and Uniform Resource Characteristics (URCs), a metadata framework. As described in RFC 1737 (1994), and later in RFC 2141 (1997), URNs were distinguished from URLs, which identify resources by specifying their locations in the context of a particular access protocol, such as HTTP or FTP. In contrast, URNs were conceived as persistent, location-independent ident ...
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ZooBank
ZooBank is an open access website intended to be the official International Commission on Zoological Nomenclature (ICZN) registry of zoological nomenclature. Any nomenclatural acts (e.g. publications that create or change a taxonomic name) need to be registered with ZooBank to be "officially" recognized by the ICZN Code of Nomenclature. Life Science Identifiers (LSIDs) are used as the globally unique identifier for ZooBank registration entries. The ZooBank prototype was seeded with data from Index to Organism Names (http://www.organismnames.com), which was compiled from the scientific literature in ''Zoological Record'' now owned by Thomson Reuters. History ZooBank was officially proposed in 2005 by the executive secretary of ICZN. The registry was live on 10 August 2006 with 1.5 million species entered. The first ZooBank LSIDs were issued on 1 January 2008, precisely 250 years after 1 January 1758, which is the date defined by the ICZN Code as the official start of scientifi ...
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Resource Description Framework
The Resource Description Framework (RDF) is a World Wide Web Consortium (W3C) standard originally designed as a data model for metadata. It has come to be used as a general method for description and exchange of graph data. RDF provides a variety of syntax notations and data serialization formats with Turtle (Terse RDF Triple Language) currently being the most widely used notation. RDF is a directed graph composed of triple statements. An RDF graph statement is represented by: 1) a node for the subject, 2) an arc that goes from a subject to an object for the predicate, and 3) a node for the object. Each of the three parts of the statement can be identified by a URI. An object can also be a literal value. This simple, flexible data model has a lot of expressive power to represent complex situations, relationships, and other things of interest, while also being appropriately abstract. RDF was adopted as a W3C recommendation in 1999. The RDF 1.0 specification was published in 2004, th ...
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SciCrunch
SciCrunch is a collaboratively edited knowledge base about scientific resources. It is a Web portal, community portal for researchers and a content management system for data and databases. It is intended to provide a common source of data to the research community and the data about Research Resource Identifiers (RRIDs), which can be used in scholarly communication, scientific publications. In some respect, it is for science and scholarly publishing, similar to what Wikidata is for Wikimedia Foundation projects. Hosted by the University of California, San Diego, SciCrunch was also designed to help communities of researchers create their own portals to provide access to resources, databases and tools of relevance to their research areas Research Resource Identifiers Research Resource Identifiers (RRID) are supposed to be resource identifiers which are globally unique and persistent. They were introduced and are promoted by the Resource Identification Initiative. Resources in th ...
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International Geo Sample Number
The International Generic Sample Number or IGSN is a persistent identifier for sample. As an active persistent identifier it can be resolved through the Handle System. The system is used in production by the System for Earth Sample Registration (SESAR), Geoscience Australia, Commonwealth Scientific and Industrial Research Organisation Mineral Resources, Australian Research Data Commons (ARDC), University of Bremen MARUM, German Research Centre for Geosciences (GFZ), IFREMER Institut Français de Recherche pour l'Exploitation de la Mer, Korea Institute of Geoscience & Mineral Resources (KIGAM), and University of Kiel. Other organisations are preparing the introduction of the IGSN. The IGSN was developed as the International Geo Sample Number to provide a persistent, globally unique, web resolvable identifier for physical samples. IGSN is both a governance and technical system for assigning globally unique persistent identifiers to physical samples. Even though initially developed ...
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Semantic Grid
A semantic grid is an approach to grid computing in which information, computing resources and services are described using the semantic data model. In this model, the data and metadata are expressed through facts (small sentences), becoming directly understandable for humans. This makes it easier for resources to be discovered and combined automatically to create virtual organizations (VOs). The descriptions constitute metadata and are typically represented using the technologies of the Semantic Web, such as the Resource Description Framework (RDF). Like the Semantic Web, the semantic grid can be defined as "an extension of the current grid in which information and services are given well-defined meaning, better enabling computers and people to work in cooperation." This notion of the semantic grid was first articulated in the context of e-Science, observing that such an approach is necessary to achieve a high degree of easy-to-use and seamless automation, enabling flexible ...
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Digital Object Identifier
A digital object identifier (DOI) is a persistent identifier or handle used to uniquely identify various objects, standardized by the International Organization for Standardization (ISO). DOIs are an implementation of the Handle System; they also fit within the URI system ( Uniform Resource Identifier). They are widely used to identify academic, professional, and government information, such as journal articles, research reports, data sets, and official publications. DOIs have also been used to identify other types of information resources, such as commercial videos. A DOI aims to resolve to its target, the information object to which the DOI refers. This is achieved by binding the DOI to metadata about the object, such as a URL where the object is located. Thus, by being actionable and interoperable, a DOI differs from ISBNs or ISRCs which are identifiers only. The DOI system uses the indecs Content Model for representing metadata. The DOI for a document remains fixed over t ...
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Index (publishing)
An index (plural: usually indexes, more rarely indices; see below) is a list of words or phrases ('headings') and associated pointers ('locators') to where useful material relating to that heading can be found in a document or collection of documents. Examples are an index in the back matter of a book and an index that serves as a library catalog. An index differs from a word index, or ''concordance'', in focusing on the subject of the text rather than the exact words in a text, and it differs from a table of contents because the index is ordered by subject, regardless of whether it is early or late in the book, while the listed items in a table of contents is placed in the same order as the book. In a traditional ''back-of-the-book index'', the headings will include names of people, places, events, and concepts selected as being relevant and of interest to a possible reader of the book. The indexer performing the selection may be the author, the editor, or a professional inde ...
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Identifiers
An identifier is a name that identifies (that is, labels the identity of) either a unique object or a unique ''class'' of objects, where the "object" or class may be an idea, physical countable object (or class thereof), or physical noncountable substance (or class thereof). The abbreviation ID often refers to identity, identification (the process of identifying), or an identifier (that is, an instance of identification). An identifier may be a word, number, letter, symbol, or any combination of those. The words, numbers, letters, or symbols may follow an encoding system (wherein letters, digits, words, or symbols ''stand for'' epresentideas or longer names) or they may simply be arbitrary. When an identifier follows an encoding system, it is often referred to as a code or ID code. For instance the ISO/IEC 11179 metadata registry standard defines a code as ''system of valid symbols that substitute for longer values'' in contrast to identifiers without symbolic meaning. Ide ...
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MIRIAM
Miriam ( he, מִרְיָם ''Mīryām'', lit. 'Rebellion') is described in the Hebrew Bible as the daughter of Amram and Jochebed, and the older sister of Moses and Aaron. She was a prophetess and first appears in the Book of Exodus. The Torah refers to her as "Miriam the Prophetess" and the Talmud names her as one of the seven major female prophets of Israel. Scripture describes her alongside of Moses and Aaron as delivering the Jews from exile in Egypt: "For I brought you up out of the land of Egypt and redeemed you from the house of slavery, and I sent before you Moses, Aaron, and Miriam". According to the Midrash, just as Moses led the men out of Egypt and taught them Torah, so too Miriam led the women and taught them Torah. Biblical narrative Miriam was the daughter of Amram and Jochebed; she was the sister of Aaron and Moses, the leader of the Israelites in ancient Egypt. The narrative of Moses' infancy in the Torah describes an unnamed sister of Moses observing him ...
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MycoBank
MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations. It is run by the Westerdijk Fungal Biodiversity Institute in Utrecht. Each novelty, after being screened by nomenclatural experts and found in accordance with the ICN ( International Code of Nomenclature for algae, fungi, and plants), is allocated a unique MycoBank number before the new name has been validly published. This number then can be cited by the naming author in the publication where the new name is being introduced. Only then, this unique number becomes public in the database. By doing so, this system can help solve the problem of knowing which names have been validly published and in which year. MycoBank is linked to other important mycological databases such as ''Index Fungorum'', Life Science Identifiers, Global Biodiversity Information Facility (GBIF) and other databases. MycoBank is one of three nomenclatural repositories r ...
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Escherichia Coli
''Escherichia coli'' (),Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. also known as ''E. coli'' (), is a Gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus ''Escherichia'' that is commonly found in the lower intestine of warm-blooded organisms. Most ''E. coli'' strains are harmless, but some serotypes ( EPEC, ETEC etc.) can cause serious food poisoning in their hosts, and are occasionally responsible for food contamination incidents that prompt product recalls. Most strains do not cause disease in humans and are part of the normal microbiota of the gut; such strains are harmless or even beneficial to humans (although these strains tend to be less studied than the pathogenic ones). For example, some strains of ''E. coli'' benefit their hosts by producing vitamin K2 or by preventing the colonization of the intestine by pathogenic bacteria. These mutually beneficial relationships between ''E. col ...
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