Haldane's Dilemma
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Haldane's Dilemma
Haldane's dilemma, also known as "the waiting time problem", is a limit on the speed of beneficial evolution, calculated by J. B. S. Haldane in 1957. Before the invention of DNA sequencing technologies, it was not known how much polymorphism DNA harbored, although alloenzymes (variant forms of an enzyme which differ structurally but not functionally from other alloenzymes coded for by different alleles at the same locus) were beginning to make it clear that substantial polymorphism existed. This was puzzling because the amount of polymorphism known to exist seemed to exceed the theoretical limits that Haldane calculated, that is, the limits imposed if polymorphisms present in the population generally influence an organism's fitness. Motoo Kimura's landmark paper on neutral theory in 1968 built on Haldane's work to suggest that most molecular evolution is neutral, resolving the dilemma. Although neutral evolution remains the consensus theory among modern biologists, and thus Kimu ...
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JBS Haldane 1964 India - A Cropped Image
JBS may refer to: Schools * John Burroughs School, in Ladue, Missouri, United States * Judge Business School, at Cambridge University * June Buchanan School, in Pippa Passes, Kentucky, United States * John Bosco School, former name of De La Salle John Bosco College * JBS, an abbreviation for Lycée Jean-Baptiste-Say (JBS Lyceum), Paris Groups, organizations, companies * Japan Bible Society * JBS S.A., a Brazilian meat processor operating worldwide ** JBS USA, its U.S. subsidiary * Jewish Broadcasting Service, an American broadcaster * Johanson–Blizzard syndrome * John Birch Society Other uses * Jubilee Bus Station, in Secunderabad, Telangana, India * John Bendor-Samuel (1929–2011), a British missionary linguist * ''Journal of British Studies'' * Journey Beyond Sodor, a 2017 Thomas & Friends film See also * JB (other) * JB's (other) JB's may refer to: *The J.B.'s James Brown's backing band *JB's Dudley a club just outside Birmingham, England *JB's Restaur ...
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Continuum Limit
In mathematical physics and mathematics, the continuum limit or scaling limit of a lattice model (physics), lattice model refers to its behaviour in the limit as the lattice spacing goes to zero. It is often useful to use lattice models to approximate real-world processes, such as Brownian motion. Indeed, according to Donsker's theorem, the discrete random walk would, in the scaling limit, approach the true Brownian motion. Terminology The term ''continuum limit'' mostly finds use in the physical sciences, often in reference to models of aspects of quantum physics, while the term ''scaling limit'' is more common in mathematical use. Application in quantum field theory A lattice model that approximates a Continuum (theory), continuum quantum field theory in the limit as the lattice spacing goes to zero may correspond to finding a second order phase transition of the model. This is the scaling limit of the model. See also * Universality classes References *H. E. Stanley, ''Intro ...
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Works By J
Works may refer to: People * Caddy Works (1896–1982), American college sports coach * Samuel Works (c. 1781–1868), New York politician Albums * '' ''Works'' (Pink Floyd album)'', a Pink Floyd album from 1983 * ''Works'', a Gary Burton album from 1972 * ''Works'', a Status Quo album from 1983 * ''Works'', a John Abercrombie album from 1991 * ''Works'', a Pat Metheny album from 1994 * ''Works'', an Alan Parson Project album from 2002 * ''Works Volume 1'', a 1977 Emerson, Lake & Palmer album * ''Works Volume 2'', a 1977 Emerson, Lake & Palmer album * '' The Works'', a 1984 Queen album Other uses * Microsoft Works, a collection of office productivity programs created by Microsoft * IBM Works, an office suite for the IBM OS/2 operating system * Mount Works, Victoria Land, Antarctica See also * The Works (other) * Work (other) Work may refer to: * Work (human activity), intentional activity people perform to support themselves, others, or the community ** ...
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Mathematical And Theoretical Biology
Mathematical and theoretical biology, or biomathematics, is a branch of biology which employs theoretical analysis, mathematical models and abstractions of the living organisms to investigate the principles that govern the structure, development and behavior of the systems, as opposed to experimental biology which deals with the conduction of experiments to prove and validate the scientific theories. The field is sometimes called mathematical biology or biomathematics to stress the mathematical side, or theoretical biology to stress the biological side. Theoretical biology focuses more on the development of theoretical principles for biology while mathematical biology focuses on the use of mathematical tools to study biological systems, even though the two terms are sometimes interchanged. Mathematical biology aims at the mathematical representation and modeling of biological processes, using techniques and tools of applied mathematics. It can be useful in both theoretical and prac ...
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Evolutionary Biology
Evolutionary biology is the subfield of biology that studies the evolutionary processes (natural selection, common descent, speciation) that produced the diversity of life on Earth. It is also defined as the study of the history of life forms on Earth. Evolution is based on the theory that all species are related and they gradually change over time. In a population, the genetic variations affect the physical characteristics i.e. phenotypes of an organism. These changes in the phenotypes will be an advantage to some organisms, which will then be passed onto their offspring. Some examples of evolution in species over many generations are the Peppered Moth and Flightless birds. In the 1930s, the discipline of evolutionary biology emerged through what Julian Huxley called the modern synthesis of understanding, from previously unrelated fields of biological research, such as genetics and ecology, systematics, and paleontology. The importance of studying Evolutionary biology is ...
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Population Genetics
Population genetics is a subfield of genetics that deals with genetic differences within and between populations, and is a part of evolutionary biology. Studies in this branch of biology examine such phenomena as adaptation, speciation, and population structure. Population genetics was a vital ingredient in the emergence of the modern evolutionary synthesis. Its primary founders were Sewall Wright, J. B. S. Haldane and Ronald Fisher, who also laid the foundations for the related discipline of quantitative genetics. Traditionally a highly mathematical discipline, modern population genetics encompasses theoretical, laboratory, and field work. Population genetic models are used both for statistical inference from DNA sequence data and for proof/disproof of concept. What sets population genetics apart from newer, more phenotypic approaches to modelling evolution, such as evolutionary game theory and adaptive dynamics, is its emphasis on such genetic phenomena as dominance, epi ...
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Muller's Ratchet
In evolutionary genetics, Muller's ratchet (named after Hermann Joseph Muller, by analogy with a ratchet effect) is a process through which, in the absence of recombination (especially in an asexual population), an accumulation of irreversible deleterious mutations results. (original paper as cited by, e.g.: ; ) This happens due to the fact that in the absence of recombination, and assuming reverse mutations are rare, offspring bear at least as much mutational load as their parents. Muller proposed this mechanism as one reason why sexual reproduction may be favored over asexual reproduction, as sexual organisms benefit from recombination and consequent elimination of deleterious mutations. The negative effect of accumulating irreversible deleterious mutations may not be prevalent in organisms which, while they reproduce asexually, also undergo other forms of recombination. This effect has also been observed in those regions of the genomes of sexual organisms that do not undergo ...
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Genetic Load
Genetic load is the difference between the fitness of an average genotype in a population and the fitness of some reference genotype, which may be either the best present in a population, or may be the theoretically optimal genotype. The average individual taken from a population with a low genetic load will generally, when grown in the same conditions, have more surviving offspring than the average individual from a population with a high genetic load. Genetic load can also be seen as reduced fitness at the population level compared to what the population would have if all individuals had the reference high-fitness genotype. High genetic load may put a population in danger of extinction. Fundamentals Consider n genotypes \mathbf _1, \dots, \mathbf _n, which have the fitnesses w_1, \dots, w_n and frequencies p_1, \dots, p_n, respectively. Ignoring frequency-dependent selection, the genetic load L may be calculated as: :L = where w_\max is either some theoretical optimum, or t ...
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Genetic Drift
Genetic drift, also known as allelic drift or the Wright effect, is the change in the frequency of an existing gene variant (allele) in a population due to random chance. Genetic drift may cause gene variants to disappear completely and thereby reduce genetic variation. It can also cause initially rare alleles to become much more frequent and even fixed. When few copies of an allele exist, the effect of genetic drift is more notable, and when many copies exist, the effect is less notable. In the middle of the 20th century, vigorous debates occurred over the relative importance of natural selection versus neutral processes, including genetic drift. Ronald Fisher, who explained natural selection using Mendelian genetics, held the view that genetic drift plays at most a minor role in evolution, and this remained the dominant view for several decades. In 1968, population geneticist Motoo Kimura rekindled the debate with his neutral theory of molecular evolution, which claims that ...
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Error Catastrophe
Error catastrophe refers to the cumulative loss of genetic information in a lineage of organisms due to high mutation rates. The mutation rate above which error catastrophe occurs is called the error threshold. Both terms were coined by Manfred Eigen in his mathematical evolutionary theory of the quasispecies. The term is most widely used to refer to mutation accumulation to the point of inviability of the organism or virus, where it cannot produce enough viable offspring to maintain a population. This use of Eigen's term was adopted by Lawrence Loeb and colleagues to describe the strategy of lethal mutagenesis to cure HIV by using mutagenic ribonucleoside analogs. There was an earlier use of the term introduced in 1963 by Leslie Orgel in a theory for cellular aging, in which errors in the translation of proteins involved in protein translation would amplify the errors until the cell was inviable. This theory has not received empirical support. Error catastrophe is predict ...
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Leigh Van Valen
Leigh Van Valen (August 12, 1935 – October 16, 2010) was a U.S. evolutionary biologist. At the time of his death, he was professor emeritus in the Department of Ecology and Evolution at the University of Chicago. Research and interests Amongst other work, Van Valen's proposed "Law of Extinction", known as Van Valen's law, drew upon the apparent constant probability (as opposed to rate) of extinction in families of related organisms, based on data compiled from existing literature on the duration of tens of thousands of genera throughout the fossil record. Van Valen proposed the Red Queen Hypothesis (1973), as an explanatory tangent to the Law of Extinction. The Red Queen Hypothesis captures the idea that there is a constant 'arms race' between co-evolving species. Its name is a reference to the Red Queen's race in Lewis Carroll's ''Through the Looking-Glass'', in which the chess board moves such that Alice must continue running just to stay in the same place. Van Valen also ...
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Allele
An allele (, ; ; modern formation from Greek ἄλλος ''állos'', "other") is a variation of the same sequence of nucleotides at the same place on a long DNA molecule, as described in leading textbooks on genetics and evolution. ::"The chromosomal or genomic location of a gene or any other genetic element is called a locus (plural: loci) and alternative DNA sequences at a locus are called alleles." The simplest alleles are single nucleotide polymorphisms (SNP). but they can also be insertions and deletions of up to several thousand base pairs. Popular definitions of 'allele' typically refer only to different alleles within genes. For example, the ABO blood grouping is controlled by the ABO gene, which has six common alleles (variants). In population genetics, nearly every living human's phenotype for the ABO gene is some combination of just these six alleles. Most alleles observed result in little or no change in the function of the gene product it codes for. However, ...
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