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Hierarchical Clustering Of Networks
Hierarchical clustering is one method for finding community structures in a network. The technique arranges the network into a hierarchy of groups according to a specified weight function. The data can then be represented in a tree structure known as a dendrogram. Hierarchical clustering can either be agglomerative or divisive depending on whether one proceeds through the algorithm by adding links to or removing links from the network, respectively. One divisive technique is the Girvan–Newman algorithm. Algorithm In the hierarchical clustering algorithm, a weight W_ is first assigned to each pair of vertices (i,j) in the network. The weight, which can vary depending on implementation (see section below), is intended to indicate how closely related the vertices are. Then, starting with all the nodes in the network disconnected, begin pairing nodes from highest to lowest weight between the pairs (in the divisive case, start from the original network and remove links from low ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Hierarchical Clustering
In data mining and statistics, hierarchical clustering (also called hierarchical cluster analysis or HCA) is a method of cluster analysis that seeks to build a hierarchy of clusters. Strategies for hierarchical clustering generally fall into two categories: * Agglomerative: This is a " bottom-up" approach: Each observation starts in its own cluster, and pairs of clusters are merged as one moves up the hierarchy. * Divisive: This is a "top-down" approach: All observations start in one cluster, and splits are performed recursively as one moves down the hierarchy. In general, the merges and splits are determined in a greedy manner. The results of hierarchical clustering are usually presented in a dendrogram. The standard algorithm for hierarchical agglomerative clustering (HAC) has a time complexity of \mathcal(n^3) and requires \Omega(n^2) memory, which makes it too slow for even medium data sets. However, for some special cases, optimal efficient agglomerative methods (of c ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Community Structure
In the study of complex networks, a network is said to have community structure if the nodes of the network can be easily grouped into (potentially overlapping) sets of nodes such that each set of nodes is densely connected internally. In the particular case of ''non-overlapping'' community finding, this implies that the network divides naturally into groups of nodes with dense connections internally and sparser connections between groups. But ''overlapping'' communities are also allowed. The more general definition is based on the principle that pairs of nodes are more likely to be connected if they are both members of the same community(ies), and less likely to be connected if they do not share communities. A related but different problem is community search, where the goal is to find a community that a certain vertex belongs to. Properties In the study of networks, such as computer and information networks, social networks and biological networks, a number of different charac ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Graph (discrete Mathematics)
In discrete mathematics, and more specifically in graph theory, a graph is a structure amounting to a Set (mathematics), set of objects in which some pairs of the objects are in some sense "related". The objects correspond to mathematical abstractions called ''Vertex (graph theory), vertices'' (also called ''nodes'' or ''points'') and each of the related pairs of vertices is called an ''edge'' (also called ''link'' or ''line''). Typically, a graph is depicted in diagrammatic form as a set of dots or circles for the vertices, joined by lines or curves for the edges. Graphs are one of the objects of study in discrete mathematics. The edges may be directed or undirected. For example, if the vertices represent people at a party, and there is an edge between two people if they shake hands, then this graph is undirected because any person ''A'' can shake hands with a person ''B'' only if ''B'' also shakes hands with ''A''. In contrast, if an edge from a person ''A'' to a person ''B'' m ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Dendrogram
A dendrogram is a diagram representing a tree. This diagrammatic representation is frequently used in different contexts: * in hierarchical clustering, it illustrates the arrangement of the clusters produced by the corresponding analyses. * in computational biology, it shows the clustering of genes or samples, sometimes in the margins of heatmaps. * in phylogenetics, it displays the evolutionary relationships among various biological taxa. In this case, the dendrogram is also called a phylogenetic tree. The name ''dendrogram'' derives from the two ancient greek words (), meaning "tree", and (), meaning "drawing, mathematical figure". Clustering example For a clustering example, suppose that five taxa (a to e) have been clustered by UPGMA based on a matrix of genetic distances. The hierarchical clustering dendrogram would show a column of five nodes representing the initial data (here individual taxa), and the remaining nodes represent the clusters to which the dat ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Agglomerative Clustering
In data mining and statistics, hierarchical clustering (also called hierarchical cluster analysis or HCA) is a method of cluster analysis that seeks to build a hierarchy of clusters. Strategies for hierarchical clustering generally fall into two categories: * Agglomerative: This is a " bottom-up" approach: Each observation starts in its own cluster, and pairs of clusters are merged as one moves up the hierarchy. * Divisive: This is a "top-down" approach: All observations start in one cluster, and splits are performed recursively as one moves down the hierarchy. In general, the merges and splits are determined in a greedy manner. The results of hierarchical clustering are usually presented in a dendrogram. The standard algorithm for hierarchical agglomerative clustering (HAC) has a time complexity of \mathcal(n^3) and requires \Omega(n^2) memory, which makes it too slow for even medium data sets. However, for some special cases, optimal efficient agglomerative methods (of compl ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Divisive Clustering
In data mining and statistics, hierarchical clustering (also called hierarchical cluster analysis or HCA) is a method of cluster analysis that seeks to build a hierarchy of clusters. Strategies for hierarchical clustering generally fall into two categories: * Agglomerative: This is a " bottom-up" approach: Each observation starts in its own cluster, and pairs of clusters are merged as one moves up the hierarchy. * Divisive: This is a "top-down" approach: All observations start in one cluster, and splits are performed recursively as one moves down the hierarchy. In general, the merges and splits are determined in a greedy manner. The results of hierarchical clustering are usually presented in a dendrogram. The standard algorithm for hierarchical agglomerative clustering (HAC) has a time complexity of \mathcal(n^3) and requires \Omega(n^2) memory, which makes it too slow for even medium data sets. However, for some special cases, optimal efficient agglomerative methods (of compl ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Girvan–Newman Algorithm
The Girvan–Newman algorithm (named after Michelle Girvan and Mark Newman) is a hierarchical method used to detect communities in complex systems.Girvan M. and Newman M. E. J.Community structure in social and biological networks Proc. Natl. Acad. Sci. USA 99, 7821–7826 (2002) Edge betweenness and community structure The Girvan–Newman algorithm detects communities by progressively removing edges from the original network. The connected components of the remaining network are the communities. Instead of trying to construct a measure that tells us which edges are the most central to communities, the Girvan–Newman algorithm focuses on edges that are most likely "between" communities. Vertex betweenness is an indicator of highly central nodes in networks. For any node i, vertex betweenness is defined as the fraction of shortest paths between pairs of nodes that run through it. It is relevant to models where the network modulates transfer of goods between known start and end n ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Weight (mathematics)
The process of weighting involves emphasizing the contribution of particular aspects of a phenomenon (or of a set of data) over others to an outcome or result; thereby highlighting those aspects in comparison to others in the analysis. That is, rather than each variable in the data set contributing equally to the final result, some of the data is adjusted to make a greater contribution than others. This is analogous to the practice of adding (extra) weight to one side of a pair of scales in order to favour either the buyer or seller. While weighting may be applied to a set of data, such as epidemiological data, it is more commonly applied to measurements of light, heat, sound, gamma radiation, and in fact any stimulus that is spread over a spectrum of frequencies. Weighting and loudness In the measurement of loudness, for example, a weighting filter is commonly used to emphasise frequencies around 3 to 6 kHz where the human ear is most sensitive, while attenuating very ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Vertex (graph Theory)
In discrete mathematics, and more specifically in graph theory, a vertex (plural vertices) or node is the fundamental unit of which graphs are formed: an undirected graph consists of a set of vertices and a set of edges (unordered pairs of vertices), while a directed graph consists of a set of vertices and a set of arcs (ordered pairs of vertices). In a diagram of a graph, a vertex is usually represented by a circle with a label, and an edge is represented by a line or arrow extending from one vertex to another. From the point of view of graph theory, vertices are treated as featureless and indivisible objects, although they may have additional structure depending on the application from which the graph arises; for instance, a semantic network is a graph in which the vertices represent concepts or classes of objects. The two vertices forming an edge are said to be the endpoints of this edge, and the edge is said to be incident to the vertices. A vertex ''w'' is said to be ad ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Betweenness Centrality
In graph theory, betweenness centrality (or "betweeness centrality") is a measure of centrality in a graph based on shortest paths. For every pair of vertices in a connected graph, there exists at least one shortest path between the vertices such that either the number of edges that the path passes through (for unweighted graphs) or the sum of the weights of the edges (for weighted graphs) is minimized. The betweenness centrality for each vertex is the number of these shortest paths that pass through the vertex. Betweenness centrality was devised as a general measure of centrality: it applies to a wide range of problems in network theory, including problems related to social networks, biology, transport and scientific cooperation. Although earlier authors have intuitively described centrality as based on betweenness, gave the first formal definition of betweenness centrality. Betweenness centrality finds wide application in network theory; it represents the degree to which nodes ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Modularity (networks)
Modularity is a measure of the structure of networks or graphs which measures the strength of division of a network into modules (also called groups, clusters or communities). Networks with high modularity have dense connections between the nodes within modules but sparse connections between nodes in different modules. Modularity is often used in optimization methods for detecting community structure in networks. However, it has been shown that modularity suffers a resolution limit and, therefore, it is unable to detect small communities. Biological networks, including animal brains, exhibit a high degree of modularity. Motivation Many scientifically important problems can be represented and empirically studied using networks. For example, biological and social patterns, the World Wide Web, metabolic networks, food webs, neural networks and pathological networks are real world problems that can be mathematically represented and topologically studied to reveal some unexpected str ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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