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Giant Virus Finder
The Giant Virus Finder is a free bioinformatics software for finding giant viruses in metagenomes. Applications The Giant Virus Finder tool integrates and applies thGiant Virus Toplist the list of the largest virus genomes. With the tool, giant viruses were found in diverse habitats, like the Great Rann of Kutch or the Mojave Desert, the Prairie, or the Antarctic dry valleys The McMurdo Dry Valleys are a row of largely Antarctic oasis, snow-free valleys in Antarctica, located within Victoria Land west of McMurdo Sound. The Dry Valleys experience extremely low humidity and surrounding mountains prevent the flow of .... References {{reflist Metagenomics software Free bioinformatics software ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Perl
Perl is a family of two high-level, general-purpose, interpreted, dynamic programming languages. "Perl" refers to Perl 5, but from 2000 to 2019 it also referred to its redesigned "sister language", Perl 6, before the latter's name was officially changed to Raku in October 2019. Though Perl is not officially an acronym, there are various backronyms in use, including "Practical Extraction and Reporting Language". Perl was developed by Larry Wall in 1987 as a general-purpose Unix scripting language to make report processing easier. Since then, it has undergone many changes and revisions. Raku, which began as a redesign of Perl 5 in 2000, eventually evolved into a separate language. Both languages continue to be developed independently by different development teams and liberally borrow ideas from each other. The Perl languages borrow features from other programming languages including C, sh, AWK, and sed; They provide text processing facilities without the arbitrary data-le ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Python (programming Language)
Python is a high-level, general-purpose programming language. Its design philosophy emphasizes code readability with the use of significant indentation. Python is dynamically-typed and garbage-collected. It supports multiple programming paradigms, including structured (particularly procedural), object-oriented and functional programming. It is often described as a "batteries included" language due to its comprehensive standard library. Guido van Rossum began working on Python in the late 1980s as a successor to the ABC programming language and first released it in 1991 as Python 0.9.0. Python 2.0 was released in 2000 and introduced new features such as list comprehensions, cycle-detecting garbage collection, reference counting, and Unicode support. Python 3.0, released in 2008, was a major revision that is not completely backward-compatible with earlier versions. Python 2 was discontinued with version 2.7.18 in 2020. Python consistently ranks as ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
English Language
English is a West Germanic language of the Indo-European language family, with its earliest forms spoken by the inhabitants of early medieval England. It is named after the Angles, one of the ancient Germanic peoples that migrated to the island of Great Britain. Existing on a dialect continuum with Scots, and then closest related to the Low Saxon and Frisian languages, English is genealogically West Germanic. However, its vocabulary is also distinctively influenced by dialects of France (about 29% of Modern English words) and Latin (also about 29%), plus some grammar and a small amount of core vocabulary influenced by Old Norse (a North Germanic language). Speakers of English are called Anglophones. The earliest forms of English, collectively known as Old English, evolved from a group of West Germanic (Ingvaeonic) dialects brought to Great Britain by Anglo-Saxon settlers in the 5th century and further mutated by Norse-speaking Viking settlers starting in the 8th and 9th ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bioinformatics
Bioinformatics () is an interdisciplinary field that develops methods and software tools for understanding biological data, in particular when the data sets are large and complex. As an interdisciplinary field of science, bioinformatics combines biology, chemistry, physics, computer science, information engineering, mathematics and statistics to analyze and interpret the biological data. Bioinformatics has been used for '' in silico'' analyses of biological queries using computational and statistical techniques. Bioinformatics includes biological studies that use computer programming as part of their methodology, as well as specific analysis "pipelines" that are repeatedly used, particularly in the field of genomics. Common uses of bioinformatics include the identification of candidates genes and single nucleotide polymorphisms (SNPs). Often, such identification is made with the aim to better understand the genetic basis of disease, unique adaptations, desirable properties (e ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
GNU General Public Licence
The GNU General Public License (GNU GPL or simply GPL) is a series of widely used free software licenses that guarantee end users the four freedoms to run, study, share, and modify the software. The license was the first copyleft for general use and was originally written by the founder of the Free Software Foundation (FSF), Richard Stallman, for the GNU Project. The license grants the recipients of a computer program the rights of the Free Software Definition. These GPL series are all copyleft licenses, which means that any derivative work must be distributed under the same or equivalent license terms. It is more restrictive than the Lesser General Public License and even further distinct from the more widely used permissive software licenses BSD, MIT, and Apache. Historically, the GPL license family has been one of the most popular software licenses in the free and open-source software domain. Prominent free software programs licensed under the GPL include the Linux kernel a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Girus
A giant virus, sometimes referred to as a girus, is a very large virus, some of which are larger than typical bacteria. All known giant viruses belong to the phylum '' Nucleocytoviricota''. Description While the exact criteria as defined in the scientific literature vary, giant viruses are generally described as viruses having large, pseudo- icosahedral capsids (200 to 400 nanometers in diameter) that may be surrounded by a thick (approximately 100 nm) layer of filamentous protein fibers. The viruses have large, double-stranded DNA genomes (300 to >1000 kilobasepairs) that encode a large contingent of genes (of the order of 1000 genes). The best characterized giant viruses are the phylogenetically related mimivirus and megavirus, which belong to the family ''Mimiviridae'' (aka ''Megaviridae''), and are distinguished by their large capsid diameters. Giant viruses from the deep ocean, terrestrial sources, and human patients contain genes encoding cytochrome P450 (CYP; P450) ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Metagenomics
Metagenomics is the study of genetic material recovered directly from environmental or clinical samples by a method called sequencing. The broad field may also be referred to as environmental genomics, ecogenomics, community genomics or microbiomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Great Rann Of Kutch
The Great Rann of Kutch (or Rann of Kutch seasonal salt marsh) is a salt marsh in the Thar Desert in the Kutch District of Gujarat, India. It is about 7500 km2 (2900 sq miles) in area and is reputed to be one of the largest salt deserts in the world. This area has been inhabited by the Kutchi people. The Hindi word is derived from Sanskrit/Vedic word ' (इरिण) attested in the Rigveda and Mahabharata. It is an extension of the Thar Desert. Location and description The Little Rann of Kutch, including the Banni grasslands on its southern edge, is situated in the district of Kutch and comprises some between the Gulf of Kutch and the mouth of the Indus River in southern Pakistan. The marsh can be accessed from the village of Kharaghoda in Surendranagar District. The Great Rann of Kutch together with the Little Rann of Kutch is called Rann of Kutch. In India's summer monsoon, the flat semi-desert of salty clay and mudflats, which average 15 meters above sea lev ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Mojave Desert
The Mojave Desert ( ; mov, Hayikwiir Mat'aar; es, Desierto de Mojave) is a desert in the rain shadow of the Sierra Nevada mountains in the Southwestern United States. It is named for the indigenous Mojave people. It is located primarily in southeastern California and southwestern Nevada, with small portions extending into Arizona and Utah. The Mojave Desert, together with the Sonoran, Chihuahuan, and Great Basin deserts, forms a larger North American Desert. Of these, the Mojave is the smallest and driest. The Mojave Desert displays typical basin and range topography, generally having a pattern of a series of parallel mountain ranges and valleys. It is also the site of Death Valley, which is the lowest elevation in North America. The Mojave Desert is often colloquially called the "high desert", as most of it lies between . It supports a diversity of flora and fauna. The desert supports a number of human activities, including recreation, ranching, and military training. ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Prairie
Prairies are ecosystems considered part of the temperate grasslands, savannas, and shrublands biome by ecologists, based on similar temperate climates, moderate rainfall, and a composition of grasses, herbs, and shrubs, rather than trees, as the dominant vegetation type. Temperate grassland regions include the Pampas of Argentina, Brazil and Uruguay, and the steppe of Ukraine, Russia and Kazakhstan. Lands typically referred to as "prairie" tend to be in North America. The term encompasses the area referred to as the Geography of North America, Interior Lowlands of Canada, the United States, and Mexico, which includes all of the Great Plains as well as the wetter, hillier land to the east. In the U.S., the area is constituted by most or all of the states of North Dakota, South Dakota, Nebraska, Kansas, and Oklahoma, and sizable parts of the states of Montana, Wyoming, Colorado, New Mexico, Texas, Missouri, Iowa, Illinois, Indiana, Wisconsin, and western and southern Minnesota. The ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Antarctic Dry Valleys
The McMurdo Dry Valleys are a row of largely Antarctic oasis, snow-free valleys in Antarctica, located within Victoria Land west of McMurdo Sound. The Dry Valleys experience extremely low humidity and surrounding mountains prevent the flow of ice from nearby glaciers. The rocks here are granites and gneisses, and glacial tills dot this bedrock landscape, with loose gravel covering the ground. It is one of the driest places on Earth and has not seen rain for nearly two million years. The region is one of the world's most extreme deserts, and includes many features including Lake Vida, a saline lake, and the Onyx River, a meltwater stream and Antarctica's longest river. Although no living organisms have been found in the permafrost here, Endolithic lichen, endolithic Photosynthesis, photosynthetic bacteria have been found living in the relatively moist interior of rocks, and anaerobic bacteria, with a metabolism based on iron and sulfur, live under the Taylor Glacier. The valle ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Metagenomics Software
Metagenomics is the study of genetic material recovered directly from environmental or clinical samples by a method called sequencing. The broad field may also be referred to as environmental genomics, ecogenomics, community genomics or microbiomics. While traditional microbiology and microbial genome sequencing and genomics rely upon cultivated clonal cultures, early environmental gene sequencing cloned specific genes (often the 16S rRNA gene) to produce a profile of diversity in a natural sample. Such work revealed that the vast majority of microbial biodiversity had been missed by cultivation-based methods. Because of its ability to reveal the previously hidden diversity of microscopic life, metagenomics offers a powerful lens for viewing the microbial world that has the potential to revolutionize understanding of the entire living world. As the price of DNA sequencing continues to fall, metagenomics now allows microbial ecology to be investigated at a much greater scale ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
