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GraphViz
Graphviz (short for ''Graph Visualization Software'') is a package of open-source tools initiated by AT&T Labs Research for drawing graphs specified in DOT language scripts having the file name extension "gv". It also provides libraries for software applications to use the tools. Graphviz is free software licensed under the Eclipse Public License. Tools ; dot : a command-line tool to produce layered graph drawings in a variety of output formats, such as (PostScript, PDF, SVG, annotated text and so on). ; neato : useful for undirected graphs. "spring model" layout, minimizes global energy. Useful for graphs up to about 1000 nodes ; fdp : force-directed graph drawing similar to "spring model", but minimizes forces instead of energy. Useful for undirected graphs. ; sfdp : multiscale version of fdp for the layout of large undirected graphs ; twopi : for radial graph layouts. Nodes are placed on concentric circles depending their distance from a given root node ; circo : circul ...
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DOT (graph Description Language)
DOT is a graph description language. DOT graphs are typically files with the filename extension ''gv'' or ''dot''. The extension ''gv'' is preferred, to avoid confusion with the extension ''dot'' used by versions of Microsoft Word before 2007. Various programs can process DOT files. Some, such as ''dot'', ''neato'', ''twopi'', ''circo'', ''fdp'', and ''sfdp'', can read a DOT file and render it in graphical form. Others, such as ''gvpr'', ''gc'', ''acyclic'', ''ccomps'', ''sccmap'', and ''tred'', read DOT files and perform calculations on the represented graph. Finally, others, such as ''lefty'', ''dotty'', and ''grappa'', provide an interactive interface. The ''GVedit'' tool combines a text editor with noninteractive image viewer. Most programs are part of the Graphviz package or use it internally. Syntax Graph types Undirected graphs At its simplest, DOT can be used to describe an undirected graph. An undirected graph shows simple relations between objects, such as fri ...
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Layered Graph Drawing
Layered graph drawing or hierarchical graph drawing is a type of graph drawing in which the vertices of a directed graph are drawn in horizontal rows or layers with the edges generally directed downwards.... It is also known as Sugiyama-style graph drawing after Kozo Sugiyama, who first developed this drawing style. The ideal form for a layered drawing would be an upward planar drawing, in which all edges are oriented in a consistent direction and no pairs of edges cross. However, graphs often contain cycles, minimizing the number of inconsistently-oriented edges is NP-hard, and minimizing the number of crossings is also NP-hard, so layered graph drawing systems typically apply a sequence of heuristics that reduce these types of flaws in the drawing without guaranteeing to find a drawing with the minimum number of flaws. Layout algorithm The construction of a layered graph drawing proceeds in a sequence of steps: *If the input graph is not already a directed acyclic graph, a set ...
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Graph Drawing
Graph drawing is an area of mathematics and computer science combining methods from geometric graph theory and information visualization to derive two-dimensional depictions of graph (discrete mathematics), graphs arising from applications such as social network analysis, cartography, linguistics, and bioinformatics. A drawing of a graph or network diagram is a pictorial representation of the vertex (graph theory), vertices and edge (graph theory), edges of a graph. This drawing should not be confused with the graph itself: very different layouts can correspond to the same graph., p. 6. In the abstract, all that matters is which pairs of vertices are connected by edges. In the concrete, however, the arrangement of these vertices and edges within a drawing affects its understandability, usability, fabrication cost, and aesthetics. The problem gets worse if the graph changes over time by adding and deleting edges (dynamic graph drawing) and the goal is to preserve the user's menta ...
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Doxygen
Doxygen ( ) is a documentation generator and static analysis tool for software source trees. When used as a documentation generator, Doxygen extracts information from specially-formatted comments within the code. When used for analysis, Doxygen uses its parse tree to generate diagrams and charts of the code structure. Doxygen can cross reference documentation and code, so that the reader of a document can easily refer to the actual code. Doxygen is free software, released under the terms of the GNU General Public License version2 (GPLv2). Design Like Javadoc, Doxygen extracts documentation from source file comments. In addition to the Javadoc syntax, Doxygen supports the documentation tags used in the Qt toolkit and can generate output in HyperText Markup Language (HTML) as well as in Microsoft Compiled HTML Help (CHM), Rich Text Format (RTF), Portable Document Format (PDF), LaTeX, PostScript or man pages. Uses Programming languages supported by Doxygen include C, C++, ...
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ConnectedText
ConnectedText (also abbreviated as CT) is a personal wiki which runs on Windows. Articles are written in plain text in CT's own markup language. When viewing articles they are styled by a standard HTML CSS file. The markup language contains many directives for classification and linkage and can also be scripted using the Python programming language. The development of ConnectedText has now ceased. The current version (6.0.15) will be the last. It is still on sale but the developer has said that there will be no new features added. Features ConnectedText also features: * Categories * Outline view * Semantic extensions * Special date topics * Plugins, to include: ** Python scripting ** Ploticus graphs ** Graphviz charts ** Sparklines * Math formulas rendered using LaTeX * Tables * Drag and drop operations * Clipboard catcher * Version comparison * Ability to display pages in a tree view, similar to Keynote * Support to Asian code pages * Ability to export the entire wiki t ...
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Graph Modelling Language
Graph Modeling Language (GML) is a hierarchical ASCII-based file format for describing graphs. It has been also named ''Graph Meta Language''. Example A simple graph in GML format: graph comment "This is a sample graph" directed 1 id 42 label "Hello, I am a graph" node [ id 1 label "node 1" thisIsASampleAttribute 42 node [ id 2 label "node 2" thisIsASampleAttribute 43 ] node [ id 3 label "node 3" thisIsASampleAttribute 44 ] edge [ source 1 target 2 label "Edge from node 1 to node 2" ] edge [ source 2 target 3 label "Edge from node 2 to node 3" ] edge source 3 target 1 label "Edge from node 3 to node 1" ] Applications supporting GML * Cytoscape, an open source bioinformatics software platform for visualizing molecular interaction networks, loads and save previously-constructed interaction networks in GML. * igraph, an open source network analysis library with interfaces to multiple programming languages. * Gephi, an open sour ...
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Force-directed Graph Drawing
Force-directed graph drawing algorithms are a class of algorithms for drawing graphs in an aesthetically-pleasing way. Their purpose is to position the nodes of a graph in two-dimensional or three-dimensional space so that all the edges are of more or less equal length and there are as few crossing edges as possible, by assigning forces among the set of edges and the set of nodes, based on their relative positions, and then using these forces either to simulate the motion of the edges and nodes or to minimize their energy. While graph drawing can be a difficult problem, force-directed algorithms, being physical simulations, usually require no special knowledge about graph theory such as planarity. Forces Force-directed graph drawing algorithms assign forces among the set of edges and the set of nodes of a graph drawing. Typically, spring-like attractive forces based on Hooke's law are used to attract pairs of endpoints of the graph's edges towards each other, while simultaneousl ...
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AT&T Labs
AT&T Labs is the research & development division of AT&T, the telecommunications company. It employs some 1,800 people in various locations, including: Bedminster NJ; Middletown, NJ; Manhattan, NY; Warrenville, IL; Austin, TX; Dallas, TX; Atlanta, GA; San Francisco, CA; San Ramon, CA; and Redmond, WA. The main research division, made up of around 450 people, is based across the Bedminster, Middletown, San Francisco, and Manhattan locations. AT&T Labs traces its history from AT&T Bell Labs. Much research is in areas traditionally associated with networks and systems, ranging from the physics of optical transmission to foundational topics in computing and communications. Other research areas address the technical challenges of large operational networks and the resulting large data sets. Achievements Since its creation in 1996, AT&T Labs has been issued over 2,000 US patents. Researchers at AT&T Labs developed UWIN a package for running Unix applications on Windows; Graphviz, ...
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Eclipse Public License
The Eclipse Public License (EPL) is a free and open source software license most notably used for the Eclipse IDE and other projects by the Eclipse Foundation. It replaces the Common Public License (CPL) and removes certain terms relating to litigations related to patents.In section 7, this sentence is in CPL 1.0, but not EPL 1.0: "If Recipient institutes patent litigation against a Contributor with respect to a patent applicable to software (including a cross-claim or counterclaim in a lawsuit), then any patent licenses granted by that Contributor to such Recipient under this Agreement shall terminate as of the date such litigation is filed." The Eclipse Public License is designed to be a business-friendly free software license, and features weaker copyleft provisions than licenses such as the GNU General Public License (GPL). The receiver of EPL-licensed programs can use, modify, copy and distribute the work and modified versions, in some cases being obligated to release th ...
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Wikipedia HistoryHelper Pluging Life Cycle
Wikipedia is a multilingual free online encyclopedia written and maintained by a community of volunteers, known as Wikipedians, through open collaboration and using a wiki-based editing system. Wikipedia is the largest and most-read reference work in history. It is consistently one of the 10 most popular websites ranked by Similarweb and formerly Alexa; Wikipedia was ranked the 5th most popular site in the world. It is hosted by the Wikimedia Foundation, an American non-profit organization funded mainly through donations. Wikipedia was launched by Jimmy Wales and Larry Sanger on January 15, 2001. Sanger coined its name as a blend of ''wiki'' and '' encyclopedia''. Wales was influenced by the " spontaneous order" ideas associated with Friedrich Hayek and the Austrian School of economics after being exposed to these ideas by the libertarian economist Mark Thornton. Initially available only in English, versions in other languages were quickly developed. Its combined editio ...
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Graphical User Interface
The GUI ( "UI" by itself is still usually pronounced . or ), graphical user interface, is a form of user interface that allows users to interact with electronic devices through graphical icons and audio indicator such as primary notation, instead of text-based UIs, typed command labels or text navigation. GUIs were introduced in reaction to the perceived steep learning curve of CLIs ( command-line interfaces), which require commands to be typed on a computer keyboard. The actions in a GUI are usually performed through direct manipulation of the graphical elements. Beyond computers, GUIs are used in many handheld mobile devices such as MP3 players, portable media players, gaming devices, smartphones and smaller household, office and industrial controls. The term ''GUI'' tends not to be applied to other lower-display resolution types of interfaces, such as video games (where HUD (''head-up display'') is preferred), or not including flat screens like volumetric displays because ...
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Linux
Linux ( or ) is a family of open-source Unix-like operating systems based on the Linux kernel, an operating system kernel first released on September 17, 1991, by Linus Torvalds. Linux is typically packaged as a Linux distribution, which includes the kernel and supporting system software and libraries, many of which are provided by the GNU Project. Many Linux distributions use the word "Linux" in their name, but the Free Software Foundation uses the name "GNU/Linux" to emphasize the importance of GNU software, causing some controversy. Popular Linux distributions include Debian, Fedora Linux, and Ubuntu, the latter of which itself consists of many different distributions and modifications, including Lubuntu and Xubuntu. Commercial distributions include Red Hat Enterprise Linux and SUSE Linux Enterprise. Desktop Linux distributions include a windowing system such as X11 or Wayland, and a desktop environment such as GNOME or KDE Plasma. Distributions intended for ser ...
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