East Coast Boubou
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East Coast Boubou
The East Coast boubou or Zanzibar boubou (''Laniarius sublacteus'') is a species of bird in the family Malaconotidae. It is found from southeast Somalia to northeast Tanzania, and Zanzibar island. Its natural habitat is moist savanna. It has vestigial or no white wing stripe. Outer tail feathers may have white tips. Juveniles have no barring on underside. An all-black morph occurs in the area around the lower Jubba and Tana Rivers and on the Lamu Archipelago. Recent cladistic analysis of nDNA BRM15 intron-15 and mtDNA NADH dehydrogenase subunit 2 and ATP synthase F0 subunit 6 sequence data indicates that the Ethiopian boubou is a polyphyletic cryptic species complex, which was once lumped with the tropical boubou, black boubou, and Ethiopian boubou. References East Coast boubou Birds of East Africa East Coast boubou The East Coast boubou or Zanzibar boubou (''Laniarius sublacteus'') is a species of bird in the family Malaconotidae. It is found from southeast Somalia ...
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John Cassin
John Cassin (September 6, 1813 – January 10, 1869) was an American ornithologist from Pennsylvania. He worked as curator and Vice President at the Philadelphia Academy of Natural Sciences and focused on the systemic classification of the Academy's extensive collection of birds. He was one of the founders of the Delaware County Institute of Science and published several books describing 194 new species of birds. Five species of North American birds, a cicada and a mineral are named in his honor. Early life and education Cassin was born in Upper Providence Township, Pennsylvania on September 6, 1813. He was educated at the Westtown School in Westtown, Pennsylvania. His great Uncle, John Cassin, was a commodore in the U.S. Navy and served in the War of 1812. He served in the Union Army during the American Civil War and was held prisoner in the infamous Confederate Libby Prison in Richmond, Virginia. Career Cassin moved to Philadelphia in 1834 and became the head of a lith ...
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NADH Dehydrogenase
NADH dehydrogenase is an enzyme that converts nicotinamide adenine dinucleotide (NAD) from its reduced form (NADH) to its oxidized form (NAD+). Members of the NADH dehydrogenase family and analogues are commonly systematically named using the format ''NADH:acceptor oxidoreductase''. The chemical reaction these enzymes catalyze are generally represented with the follow equation; : NADH + H+ + acceptor NAD+ + reduced acceptor NADH dehydrogenase is a flavoprotein that contains iron-sulfur centers. NADH dehydrogenase is used in the electron transport chain for generation of ATP. The EC term NADH dehydrogenase (quinone) (EC 1.6.5.11) is defined for NADH dehydrogenases that use a quinone (excluding ubiquinone) as the acceptor. The EC term NADH dehydrogenase (ubiquinone) Respiratory complex I, (also known as NADH:ubiquinone oxidoreductase, Type I NADH dehydrogenase and mitochondrial complex I) is the first large protein complex of the respiratory chains of many organisms from bac ...
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Laniarius
''Laniarius'' is a genus of brightly coloured, carnivorous passerine birds commonly known as boubous or gonoleks. Not to be confused with the similar-sounding genus ''Lanius'', they were formerly classed with the true shrikes in the family Laniidae, but they and related genera are now considered sufficiently distinctive to be separated from that group as the bush-shrike family Malaconotidae. This is an African group of species which are found in scrub or open woodland. They are similar in habits to shrikes, hunting insects and other small prey from a perch on a bush. Although similar in build to the shrikes, these tend to be either colourful species or largely black. Some species are also quite secretive. Taxonomy and systematics The genus ''Laniarius'' was introduced by the French ornithologist Louis Jean Pierre Vieillot in 1816 with the yellow-crowned gonolek as the type species. The closest relatives of the genus appear to be the genus '' Chlorophoneus''. Previously, memb ...
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Ethiopian Boubou
The Ethiopian boubou (''Laniarius aethiopicus'') is a species of bird in the family Malaconotidae. It is found in Eritrea, Ethiopia, northwest Somalia, and northern Kenya. Its natural habitat is moist savanna. Its breast and belly are pinkish. It has a narrow wing stripe, extending across the median and larger wing coverts, and often a bit onto the secondary remiges. Outer tail feathers never have white tips. Recent cladistic analysis of nDNA BRM15 intron-15 and mtDNA NADH dehydrogenase subunit 2 and ATP synthase F0 subunit 6 sequence data indicates that the Ethiopian boubou is a polyphyletic cryptic species complex, which was once lumped with the tropical boubou, black boubou, and East Coast boubou. A quill mite, ''Neoaulonastus malaconotus'', has been identified as an ectoparasite of the species. It belongs to the Syringophilinae, a mite subfamily known to infect several bushshrike species. References Ethiopian boubou Birds of the Horn of Africa Ethiopian boubou Ethi ...
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Black Boubou
The black boubou (''Laniarius nigerrimus''), also known as Somali boubou, Erlanger's boubou or coastal boubou, is a medium-size bushshrike. It was split from the tropical boubou as a result of DNA sequence analysis,Nguembock, B., Fjeldså J., Couloux A., Pasquet, E. (2008)Phylogeny of ''Laniarius'': molecular data reveal'' L. liberatus ''synonymous with ''L. erlangeri'' and "plumage coloration" as unreliable morphological characters for defining species and species groups. PDF ''Mol. Phyl. Evol.'' 48(2): 396-407. and this change in status was recognized by the International Ornithological Committee in 2008. Two colour morphs are recognized, a predominantly black one, the black boubou, and an extremely rare black and yellow morph which was formerly considered a separate species, the Bulo Burti boubou (''Laniarius liberatus''). The black boubou is found in Somalia and northern Kenya. Description The adult has glossy blue-black except for white spots on the rump, visible when the ...
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Tropical Boubou
The tropical boubou or bell shrike (''Laniarius aethiopicus'') is a medium-sized passerine bird of sub-Saharan Africa. This very diverse "species" with its numerous subspecies and morphs has since long posed a taxonomic problem, and recent research suggests it is a cryptic species complex that has now been split into several species.Harris & Franklin (2000), Nguembock ''et al.'' (2008) Description The tropical boubou is fairly large for its family (bushshrikes), measuring 23–25 cm in length. Its weight can vary between about 38-70 g, but typically adults weigh between 50 and 60 g. Females are on average a bit smaller than males, but individual variation is so large that for most practical purposes the sexes seem to be of identical size. The wing measures about 98 mm on average (between 85 and 110), the tail is a mere two millimetres longer both on average and as regards variation. The tarsus is 29–37 mm long, 33 mm on average, while the bill's exposed ...
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Cryptic Species Complex
In biology, a species complex is a group of closely related organisms that are so similar in appearance and other features that the boundaries between them are often unclear. The taxa in the complex may be able to hybridize readily with each other, further blurring any distinctions. Terms that are sometimes used synonymously but have more precise meanings are cryptic species for two or more species hidden under one species name, sibling species for two (or more) species that are each other's closest relative, and species flock for a group of closely related species that live in the same habitat. As informal taxonomic ranks, species group, species aggregate, macrospecies, and superspecies are also in use. Two or more taxa that were once considered conspecific (of the same species) may later be subdivided into infraspecific taxa (taxa within a species, such as bacterial strains or plant varieties Variety may refer to: Arts and entertainment Entertainment formats * Variety ( ...
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Polyphyletic
A polyphyletic group is an assemblage of organisms or other evolving elements that is of mixed evolutionary origin. The term is often applied to groups that share similar features known as homoplasies, which are explained as a result of convergent evolution. The arrangement of the members of a polyphyletic group is called a polyphyly .. ource for pronunciation./ref> It is contrasted with monophyly and paraphyly. For example, the biological characteristic of warm-bloodedness evolved separately in the ancestors of mammals and the ancestors of birds; "warm-blooded animals" is therefore a polyphyletic grouping. Other examples of polyphyletic groups are algae, C4 photosynthetic plants, and edentates. Many taxonomists aim to avoid homoplasies in grouping taxa together, with a goal to identify and eliminate groups that are found to be polyphyletic. This is often the stimulus for major revisions of the classification schemes. Researchers concerned more with ecology than with systema ...
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DNA Sequence
DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is used to determine the order of the four bases: adenine, guanine, cytosine, and thymine. The advent of rapid DNA sequencing methods has greatly accelerated biological and medical research and discovery. Knowledge of DNA sequences has become indispensable for basic biological research, DNA Genographic Projects and in numerous applied fields such as medical diagnosis, biotechnology, forensic biology, virology and biological systematics. Comparing healthy and mutated DNA sequences can diagnose different diseases including various cancers, characterize antibody repertoire, and can be used to guide patient treatment. Having a quick way to sequence DNA allows for faster and more individualized medical care to be administered, and for more organisms to be identified and cataloged. The rapid speed of sequencing attained with modern D ...
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ATP Synthase F0 Subunit 6
''MT-ATP6'' (or ''ATP6'') is a mitochondrial gene with the full name 'mitochondrially encoded ATP synthase membrane subunit 6' that encodes the ATP synthase Fo subunit 6 (or subunit/chain A). This subunit belongs to the Fo complex of the large, transmembrane F-type ATP synthase. This enzyme, which is also known as complex V, is responsible for the final step of oxidative phosphorylation in the electron transport chain. Specifically, one segment of ATP synthase allows positively charged ions, called protons, to flow across a specialized membrane inside mitochondria. Another segment of the enzyme uses the energy created by this proton flow to convert a molecule called adenosine diphosphate (ADP) to ATP. Mutations in the ''MT-ATP6'' gene have been found in approximately 10 to 20 percent of people with Leigh syndrome. Structure The ''MT-ATP6'' gene provides information for making a protein that is essential for normal mitochondrial function. The human ''MT-ATP6'' gene, located i ...
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Protein Subunit
In structural biology, a protein subunit is a polypeptide chain or single protein molecule that assembles (or "''coassembles''") with others to form a protein complex. Large assemblies of proteins such as viruses often use a small number of types of protein subunits as building blocks. A subunit is often named with a Greek or Roman letter, and the numbers of this type of subunit in a protein is indicated by a subscript. For example, ATP synthase has a type of subunit called α. Three of these are present in the ATP synthase molecule, leading to the designation α3. Larger groups of subunits can also be specified, like α3β3-hexamer and c-ring. Naturally-occurring proteins that have a relatively small number of subunits are referred to as oligomeric.Quote: ''Oligomer molecule: A molecule of intermediate relative molecular mass, the structure of which essentially comprises a small plurality of units derived, actually or conceptually, from molecules of lower relative molecular ...
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MtDNA
Mitochondrial DNA (mtDNA or mDNA) is the DNA located in mitochondria, cellular organelles within eukaryotic cells that convert chemical energy from food into a form that cells can use, such as adenosine triphosphate (ATP). Mitochondrial DNA is only a small portion of the DNA in a eukaryotic cell; most of the DNA can be found in the cell nucleus and, in plants and algae, also in plastids such as chloroplasts. Human mitochondrial DNA was the first significant part of the human genome to be sequenced. This sequencing revealed that the human mtDNA includes 16,569 base pairs and encodes 13 proteins. Since animal mtDNA evolves faster than nuclear genetic markers, it represents a mainstay of phylogenetics and evolutionary biology. It also permits an examination of the relatedness of populations, and so has become important in anthropology and biogeography. Origin Nuclear and mitochondrial DNA are thought to be of separate evolutionary origin, with the mtDNA being derived from t ...
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