Drymoreomys Albimaculatus
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Drymoreomys Albimaculatus
''Drymoreomys'' is a rodent genus in the tribe Oryzomyini that lives in the Atlantic Forest of Brazil. The single species, ''D. albimaculatus'', is known only from the states of São Paulo and Santa Catarina and was not named until 2011. It lives in the humid forest on the eastern slopes of the Serra do Mar and perhaps reproduces year-round. Although its range is relatively large and includes some protected areas, it is patchy and threatened, and the discoverers recommend that the animal be considered "Near Threatened" on the IUCN Red List. Within Oryzomyini, ''Drymoreomys'' appears to be most closely related to ''Eremoryzomys'' from the Andes of Peru, a biogeographically unusual relationship, in that the two populations are widely separated and each is adapted to an arid or a moist environment. With a body mass of , ''Drymoreomys'' is a medium-sized rodent with long fur that is orange to reddish-buff above and grayish with several white patches below. The pads on the hin ...
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Alexandre Reis Percequillo
Alexandre may refer to: * Alexandre (given name) * Alexandre (surname) * Alexandre (film) See also * Alexander Alexander is a male given name. The most prominent bearer of the name is Alexander the Great, the king of the Ancient Greek kingdom of Macedonia who created one of the largest empires in ancient history. Variants listed here are Aleksandar, Al ... * Xano (other), a Portuguese hypocoristic of the name "Alexandre" {{Disambig ...
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Palate
The palate () is the roof of the mouth in humans and other mammals. It separates the oral cavity from the nasal cavity. A similar structure is found in crocodilians, but in most other tetrapods, the oral and nasal cavities are not truly separated. The palate is divided into two parts, the anterior, bony hard palate and the posterior, fleshy soft palate (or velum). Structure Innervation The maxillary nerve branch of the trigeminal nerve supplies sensory innervation to the palate. Development The hard palate forms before birth. Variation If the fusion is incomplete, a cleft palate results. Function When functioning in conjunction with other parts of the mouth, the palate produces certain sounds, particularly velar, palatal, palatalized, postalveolar, alveolopalatal, and uvular consonants. History Etymology The English synonyms palate and palatum, and also the related adjective palatine (as in palatine bone), are all from the Latin ''palatum'' via Old French ''palat ...
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Phylogenetic Signal
Phylogenetic signal is an evolutionary and ecological term, that describes the tendency or the pattern of related biological species to resemble each other more than any other species that is randomly picked from the same phylogenetic tree. Characteristics Phylogenetic signal is usually described as the tendency of related biological species to resemble each other more than any other species that is randomly picked from the same phylogenetic tree. In other words, phylogenetic signal can be defined as the statistical dependence among species' trait values that is a consequence of their phylogenetic relationships. The traits (eg. morphological, ecological, life-history or behavioural traits) are inherited characteristics – meaning the trait values are usually alike within closely related species, while trait values of distantly related biological species do not resemble each other to a such great degree. It is often said that traits that are more similar in closely related taxa ...
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Saturation (genetic)
Genetic saturation is the result of multiple substitutions at the same site in a sequence, or identical substitutions in different sequence, such that the apparent sequence divergence rate is lower than the actual divergence that has occurred. In phylogenetics, saturation effects result in long branch attraction, where the most distant lineages have misleadingly short branch lengths. It also decreases phylogenetic information contained in the sequences. Genetic saturation occurs most rapidly on fast evolving sequences, such as the hypervariable region of mitochondrial DNA, or in Short tandem repeat such as on the Y-chromosome. See also *Long branch attraction *Molecular clock *Human mitochondrial molecular clock *Convergent evolution Convergent evolution is the independent evolution of similar features in species of different periods or epochs in time. Convergent evolution creates analogous structures that have similar form or function but were not present in the last co ...
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Clade
A clade (), also known as a monophyletic group or natural group, is a group of organisms that are monophyletic – that is, composed of a common ancestor and all its lineal descendants – on a phylogenetic tree. Rather than the English term, the equivalent Latin term ''cladus'' (plural ''cladi'') is often used in taxonomical literature. The common ancestor may be an individual, a population, or a species (extinct or extant). Clades are nested, one in another, as each branch in turn splits into smaller branches. These splits reflect evolutionary history as populations diverged and evolved independently. Clades are termed monophyletic (Greek: "one clan") groups. Over the last few decades, the cladistic approach has revolutionized biological classification and revealed surprising evolutionary relationships among organisms. Increasingly, taxonomists try to avoid naming taxa that are not clades; that is, taxa that are not monophyletic. Some of the relationships between organisms ...
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Eremoryzomys Polius
''Eremoryzomys polius'', also known as the gray rice rat or the Marañon oryzomys,Musser and Carleton, 2005, p. 1153 is a rodent species in the tribe Oryzomyini of the family Cricetidae. Discovered in 1912 and first described in 1913 by Wilfred Osgood, it was originally placed in ''Oryzomys'' and named ''Oryzomys polius''. In 2006, a cladistic analysis found that it was not closely related to ''Oryzomys'' in the strict sense or to any other oryzomyine then known, so that it is now placed in its own genus, ''Eremoryzomys''. The Brazilian genus ''Drymoreomys'', named in 2011, is probably the closest relative of ''Eremoryzomys''. ''Eremoryzomys'' has a limited distribution in the dry upper valley of the Marañón River in central Peru, but may yet contain more than one species. A large, long-tailed rice rat, with head and body length of , ''E. polius'' has gray fur and short ears. There are well-developed ungual tufts of hair on the hindfeet. Females have eight mammae. The rostr ...
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Cytochrome B
Cytochrome b within both molecular and cell biology, is a protein found in the mitochondria of eukaryotic cells. It functions as part of the electron transport chain and is the main subunit of transmembrane cytochrome bc1 and b6f complexes. Function In the mitochondrion of eukaryotes and in aerobic prokaryotes, cytochrome b is a component of respiratory chain complex III () — also known as the bc1 complex or ubiquinol-cytochrome c reductase. In plant chloroplasts and cyanobacteria, there is an analogous protein, cytochrome b6, a component of the plastoquinone-plastocyanin reductase (), also known as the b6f complex. These complexes are involved in electron transport, the pumping of protons to create a proton-motive force ( PMF). This proton gradient is used for the generation of ATP. These complexes play a vital role in cells. Structure Cytochrome b/b6 is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. ...
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Mitochondrial DNA
Mitochondrial DNA (mtDNA or mDNA) is the DNA located in mitochondria, cellular organelles within eukaryotic cells that convert chemical energy from food into a form that cells can use, such as adenosine triphosphate (ATP). Mitochondrial DNA is only a small portion of the DNA in a eukaryotic cell; most of the DNA can be found in the cell nucleus and, in plants and algae, also in plastids such as chloroplasts. Human mitochondrial DNA was the first significant part of the human genome to be sequenced. This sequencing revealed that the human mtDNA includes 16,569 base pairs and encodes 13 proteins. Since animal mtDNA evolves faster than nuclear genetic markers, it represents a mainstay of phylogenetics and evolutionary biology. It also permits an examination of the relatedness of populations, and so has become important in anthropology and biogeography. Origin Nuclear and mitochondrial DNA are thought to be of separate evolutionary origin, with the mtDNA being derived ...
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RBP3
Retinol-binding protein 3, interstitial (RBP3), also known as IRBP is a protein that in humans is encoded by the ''RBP3'' gene. RBP3 orthologs have been identified in most eutherians except tenrecs and armadillos. Function The inter- photoreceptor retinoid-binding protein is a large glycoprotein known to bind retinoids and found primarily in the interphotoreceptor matrix of the retina between the retinal pigment epithelium and the photoreceptor cells. It is thought to transport retinoids between the retinal pigment epithelium and the photoreceptors, a critical role in the visual process. Gene The human IRBP gene is approximately 9.5 kbp in length and consists of four exons separated by three introns. The introns are 1.6-1.9 kbp long. The gene is transcribed by photoreceptor and retinoblastoma cells into an approximately 4.3-kilobase mRNA that is translated and processed into a glycosylated protein of 135,000 Da. Structure The amino acid sequence of human IRBP can ...
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Nuclear DNA
Nuclear DNA (nDNA), or nuclear deoxyribonucleic acid, is the DNA contained within each cell nucleus of a eukaryotic organism. It encodes for the majority of the genome in eukaryotes, with mitochondrial DNA and plastid DNA coding for the rest. It adheres to Mendelian inheritance, with information coming from two parents, one male and one female—rather than matrilineally (through the mother) as in mitochondrial DNA. Structure Nuclear DNA is a nucleic acid, a polymeric biomolecule or biopolymer, found in the nucleus of eukaryotic cells. Its structure is a double helix, with two strands wound around each other, a structure first described by Francis Crick and James D. Watson (1953) using data collected by Rosalind Franklin. Each strand is a long polymer chain of repeating nucleotides. Each nucleotide is composed of a five-carbon sugar, a phosphate group, and an organic base. Nucleotides are distinguished by their bases: purines, large bases that include adenine and guanine; and pyr ...
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Morphology (anatomy)
Morphology is a branch of biology dealing with the study of the form and structure of organisms and their specific structural features. This includes aspects of the outward appearance (shape, structure, colour, pattern, size), i.e. external morphology (or eidonomy), as well as the form and structure of the internal parts like bones and organs, i.e. internal morphology (or anatomy). This is in contrast to physiology, which deals primarily with function. Morphology is a branch of life science dealing with the study of gross structure of an organism or taxon and its component parts. History The etymology of the word "morphology" is from the Ancient Greek (), meaning "form", and (), meaning "word, study, research". While the concept of form in biology, opposed to function, dates back to Aristotle (see Aristotle's biology), the field of morphology was developed by Johann Wolfgang von Goethe (1790) and independently by the German anatomist and physiologist Karl Friedrich Burdach ...
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Phylogenetics
In biology, phylogenetics (; from Greek language, Greek wikt:φυλή, φυλή/wikt:φῦλον, φῦλον [] "tribe, clan, race", and wikt:γενετικός, γενετικός [] "origin, source, birth") is the study of the evolutionary history and relationships among or within groups of organisms. These relationships are determined by Computational phylogenetics, phylogenetic inference methods that focus on observed heritable traits, such as DNA sequences, Protein, protein Amino acid, amino acid sequences, or Morphology (biology), morphology. The result of such an analysis is a phylogenetic tree—a diagram containing a hypothesis of relationships that reflects the evolutionary history of a group of organisms. The tips of a phylogenetic tree can be living taxa or fossils, and represent the "end" or the present time in an evolutionary lineage. A phylogenetic diagram can be rooted or unrooted. A rooted tree diagram indicates the hypothetical common ancestor of the tree. An un ...
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