Cryptosporangiales
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Cryptosporangiales
The ''Cryptosporangiaceae'' are the only family of the order ''Cryptosporangiales'', which is a part of the phylum Actinomycetota. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature and National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The ... and the phylogeny is based on 16S rRNA-based LTP release 106 by 'The All-Species Living Tree' Project'The All-Species Living Tree' Project. References Actinomycetia Bacteria families {{actinobacteria-stub ...
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Actinomycetia
The Actinomycetia are a class of bacteria. Taxonomy The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). * Acidothermales Sen et al. 2014 * Actinomycetales Buchanan 1917 (Approved Lists 1980) * Actinopolysporales Goodfellow and Trujillo 2015 * Bifidobacteriales Stackebrandt et al. 1997 * Catenulisporales Donadio et al. 2015 * Cryptosporangiales Nouioui et al. 2018 * Frankiales Sen et al. 2014 * Geodermatophilales Sen et al. 2014 * Glycomycetales Labeda 2015 * Jatrophihabitantales Salam et al. 2020 * Jiangellales Tang et al. 2015 * Kineosporiales Kämpfer 2015 * Micrococcales Prévot 1940 (Approved Lists 1980) * Micromonosporales Genilloud 2015 * Mycobacteriales Janke 1924 (Approved Lists 1980) * Nakamurellales Sen et al. 2014 * Propionibacteriales (Rainey et al. 1997) Patrick and McDowell 2015 * Pseudonocardiales Labeda and Goodfellow 2015 * Sporichthyales ...
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Cryptosporangium
''Cryptosporangium'' is a genus of bacteria in the phylum Actinomycetota. Etymology The name ''Cryptosporangium'' derives from:Gr . adj . ''kruptos'', hidden; New Latin noun ''sporangium'' Greek noun ''spora (σπορά)'', a seed (and in biology a spore), and Ancient Greek language">Greek noun ''angeion'' (Latin transliteration ''angium''), vessel], sporangium; New Latin neuter gender noun ''Cryptosporangium'', an organism with sporangia (spore containing vessels) covered or hidden by mycelium. Species ''Cryptosporangium'' comprises the following species: * '' C. arvum'' Tamura ''et al''. 1998 (Latin noun ''arvum'', arable field, cultivated land, pertaining to isolate from arable land.) * '' C. aurantiacum'' (''ex'' Ruan ''et al''. 1976) Tamura and Hatano 2001 (New Latin neuter gender adjective ''aurantiacum'', orange-coloured.) * '' C. cibodasense'' Nurkanto et al. 2015 * '' C. eucalypti'' Himaman et al. 2017 * '' C. japonicum'' Tamura ''et al''. 1998 (New Latin neuter gender ...
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Genus
Genus ( plural genera ) is a taxonomic rank used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In the hierarchy of biological classification, genus comes above species and below family (taxonomy), family. In binomial nomenclature, the genus name forms the first part of the binomial species name for each species within the genus. :E.g. ''Panthera leo'' (lion) and ''Panthera onca'' (jaguar) are two species within the genus ''Panthera''. ''Panthera'' is a genus within the family Felidae. The composition of a genus is determined by taxonomy (biology), taxonomists. The standards for genus classification are not strictly codified, so different authorities often produce different classifications for genera. There are some general practices used, however, including the idea that a newly defined genus should fulfill these three criteria to be descriptively useful: # monophyly – all descendants ...
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List Of Prokaryotic Names With Standing In Nomenclature
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes The International Code of Nomenclature of Prokaryotes (ICNP) formerly the International Code of Nomenclature of Bacteria (ICNB) or Bacteriological Code (BC) governs the scientific names for Bacteria and Archaea.P. H. A. Sneath, 2003. A short hist .... The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in Nomenclature
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Actinomycetota
The ''Actinomycetota'' (or ''Actinobacteria'') are a phylum of all gram-positive bacteria. They can be terrestrial or aquatic. They are of great economic importance to humans because agriculture and forests depend on their contributions to soil systems. In soil they help to decompose the organic matter of dead organisms so the molecules can be taken up anew by plants. While this role is also played by fungi, ''Actinomycetota'' are much smaller and likely do not occupy the same ecological niche. In this role the colonies often grow extensive mycelia, like a fungus would, and the name of an important order of the phylum, '' Actinomycetales'' (the actinomycetes), reflects that they were long believed to be fungi. Some soil actinomycetota (such as ''Frankia'') live symbiotically with the plants whose roots pervade the soil, fixing nitrogen for the plants in exchange for access to some of the plant's saccharides. Other species, such as many members of the genus '' Mycobacterium'', ar ...
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National Center For Biotechnology Information
The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper. The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David Lipman, one of the original authors of the BLAST sequence alignment program and a widely respected figure in bioinformatics. GenBank NCBI had responsibility for making available the GenBank DNA seque ...
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'The All-Species Living Tree' Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB Project, ARB, SILVA rRNA database project, and List of Prokaryotic names with Standing in Nomenclature, LPSN, with the aim of assembling a database of 16S ribosomal RNA, 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S ribosomal RNA, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded ...
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Silva Comprehensive Ribosomal RNA Database
SILVA is a ribosomal RNA database established in collaboration between the Microbial Genomics Group at the Max Planck Institute for Marine Microbiology in Bremen, Germany, the Department of Microbiology at the Technical University Munich, and Ribocon. Release 117 of the database (January 2014) held more than 4,000,000 small subunit (SSU - 16S/18S) and 400,000 large subunit In structural biology, a protein subunit is a polypeptide chain or single protein molecule that assembles (or "''coassembles''") with others to form a protein complex. Large assemblies of proteins such as viruses often use a small number of ty ... (LSU - 23S/28S) sequences. Sequences are provided as files for the ARB software environment. See also * List of biological databases#RNA databases References {{reflist, refs= Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner (2014)An Introduction to RNA Databases ''Methods in Molecular Biology'' 1097: 107–123. {{doi, 10.1007/978-1-62703-709-9_6.
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Cryptosporangium Arvum
''Cryptosporangium'' is a genus of bacteria in the phylum Actinomycetota. Etymology The name ''Cryptosporangium'' derives from:Gr . adj . ''kruptos'', hidden; New Latin noun ''sporangium'' Greek noun ''spora (σπορά)'', a seed (and in biology a spore), and Ancient Greek language">Greek noun ''angeion'' (Latin transliteration ''angium''), vessel], sporangium; New Latin neuter gender noun ''Cryptosporangium'', an organism with sporangia (spore containing vessels) covered or hidden by mycelium. Species ''Cryptosporangium'' comprises the following species: * '' C. arvum'' Tamura ''et al''. 1998 (Latin noun ''arvum'', arable field, cultivated land, pertaining to isolate from arable land.) * '' C. aurantiacum'' (''ex'' Ruan ''et al''. 1976) Tamura and Hatano 2001 (New Latin neuter gender adjective ''aurantiacum'', orange-coloured.) * '' C. cibodasense'' Nurkanto et al. 2015 * '' C. eucalypti'' Himaman et al. 2017 * '' C. japonicum'' Tamura ''et al''. 1998 (New Latin neuter gender ...
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Cryptosporangium Japonicum
''Cryptosporangium'' is a genus of bacteria in the phylum Actinomycetota. Etymology The name ''Cryptosporangium'' derives from:Gr . adj . ''kruptos'', hidden; New Latin noun ''sporangium'' Greek noun ''spora (σπορά)'', a seed (and in biology a spore), and Ancient Greek language">Greek noun ''angeion'' (Latin transliteration ''angium''), vessel], sporangium; New Latin neuter gender noun ''Cryptosporangium'', an organism with sporangia (spore containing vessels) covered or hidden by mycelium. Species ''Cryptosporangium'' comprises the following species: * '' C. arvum'' Tamura ''et al''. 1998 (Latin noun ''arvum'', arable field, cultivated land, pertaining to isolate from arable land.) * '' C. aurantiacum'' (''ex'' Ruan ''et al''. 1976) Tamura and Hatano 2001 (New Latin neuter gender adjective ''aurantiacum'', orange-coloured.) * '' C. cibodasense'' Nurkanto et al. 2015 * '' C. eucalypti'' Himaman et al. 2017 * '' C. japonicum'' Tamura ''et al''. 1998 (New Latin neuter gender ...
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