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Convergent Evolution
Convergent evolution is the independent evolution of similar features in species of different periods or epochs in time. Convergent evolution creates analogous structures that have similar form or function but were not present in the last common ancestor of those groups. The cladistic term for the same phenomenon is homoplasy. The recurrent evolution of flight is a classic example, as flying insects, birds, pterosaurs, and bats have independently evolved the useful capacity of flight. Functionally similar features that have arisen through convergent evolution are ''analogous'', whereas '' homologous'' structures or traits have a common origin but can have dissimilar functions. Bird, bat, and pterosaur wings are analogous structures, but their forelimbs are homologous, sharing an ancestral state despite serving different functions. The opposite of convergence is divergent evolution, where related species evolve different traits. Convergent evolution is similar to para ...
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Succulent Plant
In botany, succulent plants, also known as succulents, are plants with parts that are thickened, fleshy, and engorged, usually to retain water in arid climates or soil conditions. The word ''succulent'' comes from the Latin word ''sucus'', meaning "juice" or "sap". Succulent plants may store water in various structures, such as leaves and stems. The water content of some succulent organs can get up to 90–95%, such as ''Glottiphyllum semicyllindricum'' and ''Mesembryanthemum barkleyii''. Some definitions also include roots, thus geophytes that survive unfavorable periods by dying back to underground storage organs may be regarded as succulents. The habitats of these water-preserving plants are often in areas with high temperatures and low rainfall, such as deserts, but succulents may be found even in alpine ecosystems growing in rocky soil. Succulents are characterized by their ability to thrive on limited water sources, such as mist and dew, which makes them equipped t ...
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C4 Photosynthesis
carbon fixation or the Hatch–Slack pathway is one of three known photosynthetic processes of carbon fixation in plants. It owes the names to the 1960's discovery by Marshall Davidson Hatch and Charles Roger Slack that some plants, when supplied with 14, incorporate the 14C label into four-carbon molecules first. fixation is an addition to the ancestral and more common carbon fixation. The main carboxylating enzyme in photosynthesis is called RuBisCO, which catalyses two distinct reactions using either (carboxylation) or oxygen (oxygenation) as a substrate. The latter process, oxygenation, gives rise to the wasteful process of photorespiration. photosynthesis reduces photorespiration by concentrating around RuBisCO. To ensure that RuBisCO works in an environment where there is a lot of carbon dioxide and very little oxygen, leaves generally differentiate two partially isolated compartments called mesophyll cells and bundle-sheath cells. is initially fixed in the m ...
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Stephen Jay Gould
Stephen Jay Gould (; September 10, 1941 – May 20, 2002) was an American paleontologist, evolutionary biologist, and historian of science. He was one of the most influential and widely read authors of popular science of his generation. Gould spent most of his career teaching at Harvard University and working at the American Museum of Natural History in New York. In 1996, Gould was hired as the Vincent Astor Visiting Research Professor of Biology at New York University, after which he divided his time teaching between there and Harvard. Gould's most significant contribution to evolutionary biology was the theory of punctuated equilibrium developed with Niles Eldredge in 1972.Eldredge, Niles, and S. J. Gould (1972)"Punctuated equilibria: an alternative to phyletic gradualism."In T.J.M. Schopf, ed., ''Models in Paleobiology''. San Francisco: Freeman, Cooper and Company, pp. 82–115. The theory proposes that most evolution is characterized by long periods of evolutionary st ...
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Wonderful Life (book)
''Wonderful Life: The Burgess Shale and the Nature of History'' is a 1989 book on the evolution of Cambrian fauna by Harvard paleontologist Stephen Jay Gould. The volume made ''The New York Times'' Best Seller list, was the 1991 winner of the Royal Society's Rhone-Poulenc Prize, the American Historical Association's Forkosch Award, and was a 1991 finalist for the Pulitzer Prize. Gould described his later book ''Full House'' (1996) as a companion volume to ''Wonderful Life''. Summary Gould's thesis in ''Wonderful Life'' was that contingency plays a major role in the evolutionary history of life. He based his argument on the extraordinarily well preserved fossils of the Burgess Shale, a rich fossil-bearing deposit in Canada's Rocky Mountains, dating 505 million years ago. Gould argues that during this period just after the Cambrian explosion there was a greater disparity of anatomical body plans (phyla) than exist today. However most of these phyla left no modern descendant ...
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Enzyme Superfamilies
A protein superfamily is the largest grouping (clade) of proteins for which common ancestry can be inferred (see homology). Usually this common ancestry is inferred from structural alignment and mechanistic similarity, even if no sequence similarity is evident. Sequence homology can then be deduced even if not apparent (due to low sequence similarity). Superfamilies typically contain several protein families which show sequence similarity within each family. The term ''protein clan'' is commonly used for protease and glycosyl hydrolases superfamilies based on the MEROPS and CAZy classification systems. Identification Superfamilies of proteins are identified using a number of methods. Closely related members can be identified by different methods to those needed to group the most evolutionarily divergent members. Sequence similarity Historically, the similarity of different amino acid sequences has been the most common method of inferring homology. Sequence similarity is consi ...
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Catalytic Triad
A catalytic triad is a set of three coordinated amino acids that can be found in the active site of some enzymes. Catalytic triads are most commonly found in hydrolase and transferase enzymes (e.g. proteases, amidases, esterases, acylases, lipases and β-lactamases). An acid- base-nucleophile triad is a common motif for generating a nucleophilic residue for covalent catalysis. The residues form a charge-relay network to polarise and activate the nucleophile, which attacks the substrate, forming a covalent intermediate which is then hydrolysed to release the product and regenerate free enzyme. The nucleophile is most commonly a serine or cysteine amino acid, but occasionally threonine or even selenocysteine. The 3D structure of the enzyme brings together the triad residues in a precise orientation, even though they may be far apart in the sequence (primary structure). As well as divergent evolution of function (and even the triad's nucleophile), catalytic triads show som ...
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Active Site
In biology and biochemistry, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction. The active site consists of amino acid residues that form temporary bonds with the substrate ( binding site) and residues that catalyse a reaction of that substrate (catalytic site). Although the active site occupies only ~10–20% of the volume of an enzyme, it is the most important part as it directly catalyzes the chemical reaction. It usually consists of three to four amino acids, while other amino acids within the protein are required to maintain the tertiary structure of the enzymes. Each active site is evolved to be optimised to bind a particular substrate and catalyse a particular reaction, resulting in high specificity. This specificity is determined by the arrangement of amino acids within the active site and the structure of the substrates. Sometimes enzymes also need to bind with some cofactors to fulfil their function. The activ ...
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Enzyme Mechanism
Enzyme catalysis is the increase in the rate of a process by a biological molecule, an "enzyme". Most enzymes are proteins, and most such processes are chemical reactions. Within the enzyme, generally catalysis occurs at a localized site, called the active site. Most enzymes are made predominantly of proteins, either a single protein chain or many such chains in a multi-subunit complex. Enzymes often also incorporate non-protein components, such as metal ions or specialized organic molecules known as cofactor (e.g. adenosine triphosphate). Many cofactors are vitamins, and their role as vitamins is directly linked to their use in the catalysis of biological process within metabolism. Catalysis of biochemical reactions in the cell is vital since many but not all metabolically essential reactions have very low rates when uncatalysed. One driver of protein evolution is the optimization of such catalytic activities, although only the most crucial enzymes operate near catalytic ...
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Homology (biology)
In biology, homology is similarity due to shared ancestry between a pair of structures or genes in different taxa. A common example of homologous structures is the forelimbs of vertebrates, where the Bat wing development, wings of bats and Origin of avian flight, birds, the arms of primates, the front flippers of whales and the forelegs of Quadrupedalism, four-legged vertebrates like Canidae, dogs and crocodiles are all derived from the same ancestral tetrapod structure. Evolutionary biology explains homologous structures adaptation (biology), adapted to different purposes as the result of descent with modification from a Common descent, common ancestor. The term was first applied to biology in a non-evolutionary context by the anatomist Richard Owen in 1843. Homology was later explained by Charles Darwin's theory of evolution in 1859, but had been observed before this, from Aristotle's biology, Aristotle onwards, and it was explicitly analysed by Pierre Belon in 1555. In devel ...
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Richard Owen
Sir Richard Owen (20 July 1804 – 18 December 1892) was an English biologist, comparative anatomist and paleontologist. Owen is generally considered to have been an outstanding naturalist with a remarkable gift for interpreting fossils. Owen produced a vast array of scientific work, but is probably best remembered today for coining the word '' Dinosauria'' (meaning "Terrible Reptile" or "Fearfully Great Reptile"). An outspoken critic of Charles Darwin's theory of evolution by natural selection, Owen agreed with Darwin that evolution occurred, but thought it was more complex than outlined in Darwin's ''On the Origin of Species''. Owen's approach to evolution can be considered to have anticipated the issues that have gained greater attention with the recent emergence of evolutionary developmental biology. Owen was the first president of the Microscopical Society of London in 1839 and edited many issues of its journal – then known as '' The Microscopic Journal''. Owen als ...
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Ecological Niche
In ecology, a niche is the match of a species to a specific environmental condition. Three variants of ecological niche are described by It describes how an organism or population responds to the distribution of resources and competitors (for example, by growing when resources are abundant, and when predators, parasites and pathogens are scarce) and how it in turn alters those same factors (for example, limiting access to resources by other organisms, acting as a food source for predators and a consumer of prey). "The type and number of variables comprising the dimensions of an environmental niche vary from one species to another ndthe relative importance of particular environmental variables for a species may vary according to the geographic and biotic contexts". See also Chapter 2: Concepts of niches, pp. 7 ''ff'' A Grinnellian niche is determined by the habitat in which a species lives and its accompanying behavioral adaptations. An Eltonian niche emphasizes that a sp ...
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Analogous & Homologous Structures
Analogy (from Greek ''analogia'', "proportion", from ''ana-'' "upon, according to" lso "against", "anew"+ ''logos'' "ratio" lso "word, speech, reckoning" is a cognitive process of transferring information or meaning from a particular subject (the analog, or source) to another (the target), or a linguistic expression corresponding to such a process. In a narrower sense, analogy is an inference or an argument from one particular to another particular, as opposed to deduction, inductive reasoning, induction, and abductive reasoning, abduction, in which at least one of the premises, or the conclusion, is general rather than particular in nature. The term analogy can also refer to the relation between the source and the target themselves, which is often (though not always) a Similarity (philosophy), similarity, as in the analogy (biology), biological notion of analogy. Analogy plays a significant role in problem solving, as well as decision making, argumentation, perception, genera ...
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