Ciona Intestinalis Protein Database
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Ciona Intestinalis Protein Database
The ''Ciona intestinalis'' protein database (CIPRO) is a protein database for the tunicate species '' C. intestinalis''. See also * ''Ciona intestinalis ''Ciona intestinalis'' (sometimes known by the common name of vase tunicate) is an ascidian (sea squirt), a tunicate with very soft tunic. Its Latin name literally means "pillar of intestines", referring to the fact that its body is a soft, trans ...'' References External links * http://cipro.ibio.jp/2.5 Protein databases Phlebobranchia Computer-related introductions in 2010 {{Biodatabase-stub ...
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Database
In computing, a database is an organized collection of data stored and accessed electronically. Small databases can be stored on a file system, while large databases are hosted on computer clusters or cloud storage. The design of databases spans formal techniques and practical considerations, including data modeling, efficient data representation and storage, query languages, security and privacy of sensitive data, and distributed computing issues, including supporting concurrent access and fault tolerance. A database management system (DBMS) is the software that interacts with end users, applications, and the database itself to capture and analyze the data. The DBMS software additionally encompasses the core facilities provided to administer the database. The sum total of the database, the DBMS and the associated applications can be referred to as a database system. Often the term "database" is also used loosely to refer to any of the DBMS, the database system or an appli ...
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Ciona Intestinalis
''Ciona intestinalis'' (sometimes known by the common name of vase tunicate) is an ascidian (sea squirt), a tunicate with very soft tunic. Its Latin name literally means "pillar of intestines", referring to the fact that its body is a soft, translucent column-like structure, resembling a mass of intestines sprouting from a rock. It is a globally distributed cosmopolitan species. Since Linnaeus described the species, ''Ciona intestinalis'' has been used as a model invertebrate chordate in developmental biology and genomics. Studies conducted between 2005 and 2010 have shown that there are at least two, possibly four, sister species. More recently it has been shown that one of these species has already been described as ''Ciona robusta''. By anthropogenic means, the species has invaded various parts of the world and is known as an invasive species. Although Linnaeus first categorised this species as a kind of mollusk, Alexander Kovalevsky found a tadpole-like larval stage during ...
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Hokkaido University
, or , is a Japanese national university in Sapporo, Hokkaido. It was the fifth Imperial University in Japan, which were established to be the nation's finest institutions of higher education or research. Hokkaido University is considered one of the top universities in Japan and was ranked 5th in THE Japan University Rankings. It was also selected as a "Top Type" university by the Japanese government's Top Global University Project. The main campus is located in downtown Sapporo, just north of Sapporo Station, and stretches approximately 2.4 kilometers northward. History The history of the university dates to the formal incorporation of Yezo as Hokkaido into the Japanese realm. Director of the Hokkaidō Development Commission Kuroda Kiyotaka, having traveled to America in 1870, looked to the American model of settling the new lands. Upon return he brought General Horace Capron, a commissioner of agriculture who pushed for the adoption of new agricultural practices and crops ...
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Tunicate
A tunicate is a marine invertebrate animal, a member of the subphylum Tunicata (). It is part of the Chordata, a phylum which includes all animals with dorsal nerve cords and notochords (including vertebrates). The subphylum was at one time called Urochordata, and the term urochordates is still sometimes used for these animals. They are the only chordates that have lost their myomeric segmentation, with the possible exception of the 'seriation of the gill slits'. Some tunicates live as solitary individuals, but others replicate by budding and become colonies, each unit being known as a zooid. They are marine filter feeders with a water-filled, sac-like body structure and two tubular openings, known as siphons, through which they draw in and expel water. During their respiration and feeding, they take in water through the incurrent (or inhalant) siphon and expel the filtered water through the excurrent (or exhalant) siphon. Most adult tunicates are sessile, immobile and perman ...
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Protein Databases
Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions within organisms, including catalysing metabolic reactions, DNA replication, responding to stimuli, providing structure to cells and organisms, and transporting molecules from one location to another. Proteins differ from one another primarily in their sequence of amino acids, which is dictated by the nucleotide sequence of their genes, and which usually results in protein folding into a specific 3D structure that determines its activity. A linear chain of amino acid residues is called a polypeptide. A protein contains at least one long polypeptide. Short polypeptides, containing less than 20–30 residues, are rarely considered to be proteins and are commonly called peptides. The individual amino acid residues are bonded together by peptide bonds and adjacent amino acid residues. The sequence of amino acid residues in ...
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Phlebobranchia
Phlebobranchia is a suborder of sea squirts in the class Ascidiacea. Characteristics The group includes both colonial and solitary animals. They are distinguished from other sea squirts by the presence of longitudinal vessels in the pharyngeal basket. This provides the etymology of their name: in ancient greek, means "blood vessel". Another characteristic of phlebobranchians is the gonads being surrounded by a loop of gut. The posterior part of the abdomen is absent, and many species also lack the epicardial cavity that surrounds the heart and other internal organs in many other sea squirts. Taxonomy * ?† Permosomidae ** ?†'' Permosoma tunicatum'' Jaekel 1915 'Sphaerospongia permotessellata'' Parona 1933* Agneziidae Monniot & Monniot 1991 gnesiidae Michaelsen 1898**'' Adagnesia'' Kott 1963 **'' Agnezia'' Monniot & Monniot 1991 'Agnesia'' Michaelsen 1898 non Koninck 1883**'' Caenagnesia'' Ärnbäck-Christie-Linde 1938 **'' Proagnesia depressa'' (Millar 1955) **'' Pter ...
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