|
Chloroflexi-1 RNA Motif
The Chloroflexi-1 RNA motif is a conserved RNA structure detected by bioinformatics within the species '' Chloroflexus aggregans''. ''C. aggregans'' has three predicted Chloroflexi-1 RNAs, which are located nearby to one another. This arrangement might suggest a repetitive element. ''C. aggregans'' is classified as belonging to the bacterial phylum Chloroflexota (formerly Chloroflexi). See also *Acido-Lenti-1 RNA motif *Bacteroidales-1 RNA motif *Collinsella-1 RNA motif The Collinsella-1 RNA motif denotes a particular conserved RNA structure discovered by bioinformatics. Of the six sequences belonging to this motif that were originally identified, five are from uncultivated bacteria residing in the human gut, ... * Flavo-1 RNA motif References External links * Non-coding RNA {{molecular-cell-biology-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Chloroflexus Aggregans
''Chloroflexus aggregans'' is a bacterium from the genus ''Chloroflexus'' which has been isolated from hot springs in Japan. Etymology The ''Chloroflexus aggregans'' name origins from aggregate forming strains indicative of a new species from the ''Chloroflexus'' genus. The naming of the ''C. aggregans'' comes from the visible aggregates formed by the species. Discovery and isolation In 1995, Satoshi Hanada, Akira Hiraishi, Keizo Shimada, and Katsumi Matsuura discovered a new strain of the ''Chloroflexus'' genus, named as the ''Chloroflexus aggregans.'' The researchers discovered two strains of this bacterial species: MD-66T and YI-9. The "T" in MD-66T represents the type strain. The former, MD-66T strain, was discovered from the Meotobuchi hot spring while the YI-9 strain was from the Yufuin hot spring. Phylogenetics Phylogenetically, Chloroflexus bacteria are very distinct from green sulfur bacteria but are still taxonomic relatives. Thus, there is some overlap bet ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bioinformatics
Bioinformatics () is an interdisciplinary field that develops methods and software tools for understanding biological data, in particular when the data sets are large and complex. As an interdisciplinary field of science, bioinformatics combines biology, chemistry, physics, computer science, information engineering, mathematics and statistics to analyze and interpret the biological data. Bioinformatics has been used for '' in silico'' analyses of biological queries using computational and statistical techniques. Bioinformatics includes biological studies that use computer programming as part of their methodology, as well as specific analysis "pipelines" that are repeatedly used, particularly in the field of genomics. Common uses of bioinformatics include the identification of candidates genes and single nucleotide polymorphisms (SNPs). Often, such identification is made with the aim to better understand the genetic basis of disease, unique adaptations, desirable properties (e ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacterial
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationships ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Chloroflexota
The Chloroflexota are a phylum of bacteria containing isolates with a diversity of phenotypes, including members that are aerobic thermophiles, which use oxygen and grow well in high temperatures; anoxygenic phototrophs, which use light for photosynthesis (green non-sulfur bacteria); and anaerobic halorespirers, which uses halogenated organics (such as the toxic chlorinated ethenes and polychlorinated biphenyls) as electron acceptors. The members of the phylum ''Chloroflexota'' are monoderms (that is, have one cell membrane with no outer membrane), but they stain mostly gram-negative. Many well-studied phyla of bacteria are diderms and stain gram-negative, whereas well-known monoderms that stain Gram-positive include ''Firmicutes'' (or ''Bacillota'') ( low G+C gram-positives), ''Actinomycetota'' (high-G+C gram-positives) and ''Deinococcota'' (gram-positive diderms with thick peptidoglycan). History The taxon name was created in the 2001 edition of Volume 1 of Bergey's Manual of ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Acido-Lenti-1 RNA Motif
The Acido-Lenti-1 RNA motif describes a predicted non-coding RNA that is found in bacteria within the phyla acidobacteriota and lentisphaerota. It is sometimes found nearby to group II introns, but the reason for this apparent association is unknown. See also *Bacteroidales-1 RNA motif The Bacteroidales-1 RNA motif is a conserved RNA structure identified by bioinformatics. It has been identified only in bacteria within the order (biology) Bacteroidales. Its presumed length is marked by a promoter on one end that conforms to a ... * Collinsella-1 RNA motif * Chloroflexi-1 RNA motif * Flavo-1 RNA motif References External links * Non-coding RNA {{molecular-cell-biology-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacteroidales-1 RNA Motif
The Bacteroidales-1 RNA motif is a conserved RNA structure identified by bioinformatics. It has been identified only in bacteria within the order (biology) Bacteroidales. Its presumed length is marked by a promoter on one end that conforms to an alternate consensus sequence that is common in the phylum Bacteroidota, and its 3′ end is indicated by predicted transcription terminators. It is often located downstream of a gene that encodes the L20 ribosomal subunit, although it is unclear whether there is a functional reason underlying this apparent association. Bacteroidales-1 RNA motif has been reported as a 6S RNA homologue by a report of ''Bacteroides thetaiotaomicron'' transcriptome map. The existence of small product RNAs (pRNAs) that rescue sequestered RNA polymerases In molecular biology, RNA polymerase (abbreviated RNAP or RNApol), or more specifically DNA-directed/dependent RNA polymerase (DdRP), is an enzyme that synthesizes RNA from a DNA template. Using t ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Collinsella-1 RNA Motif
The Collinsella-1 RNA motif denotes a particular conserved RNA structure discovered by bioinformatics. Of the six sequences belonging to this motif that were originally identified, five are from uncultivated bacteria residing in the human gut, while only the sixth is in a cultivated species, ''Collinsella aerofaciens''. The evidence supporting the stem-loops designated as "P1" and "P2" is ambiguous. See also *Acido-Lenti-1 RNA motif *Bacteroidales-1 RNA motif The Bacteroidales-1 RNA motif is a conserved RNA structure identified by bioinformatics. It has been identified only in bacteria within the order (biology) Bacteroidales. Its presumed length is marked by a promoter on one end that conforms to a ... * Chloroflexi-1 RNA motif * Flavo-1 RNA motif References External links * Non-coding RNA {{molecular-cell-biology-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Flavo-1 RNA Motif
The Flavo-1 RNA motif is a conserved RNA structure that was identified by bioinformatics. The vast majority of Flavo-1 RNAs are found in Flavobacteria, but some were detected in the phylum Bacteroidota, which contains Flavobacteria, or the phylum Spirochaetota, which is evolutionarily related to Bacteroidota. It was presumed that Flavo-1 RNAs function as non-coding RNAs. See also *Acido-Lenti-1 RNA motif *Bacteroidales-1 RNA motif *Collinsella-1 RNA motif *Chloroflexi-1 RNA motif The Chloroflexi-1 RNA motif is a conserved RNA structure detected by bioinformatics within the species '' Chloroflexus aggregans''. ''C. aggregans'' has three predicted Chloroflexi-1 RNAs, which are located nearby to one another. This arrangemen ... References External links * Non-coding RNA {{molecular-cell-biology-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
