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Bifidobacteriales
The Bifidobacteriaceae are the only family of bacteria in the order '' Bifidobacteriales''. According to the 16S rRNA-based LTP release 106 published by 'The All-Species Living Tree' Project, the order Bifidobacteriales is a clade nested within the suborder Micrococcineae, also the genus ''Bifidobacterium'' is paraphyletic to the other genera within the family, i.e. the other genera are nested within ''Bifidobacterium''. Genomics In a phylogenetic tree for the order ''Bifidobacteriales'', based on RpoB, RpoC, and DNA Gyrase B, ''Gardnerella vaginalis'' branches between different ''Bifidobacterium'' species, which makes the genus ''Bifidobacterium'' polyphyletic. The genus could be made monophyletic if ''G. vaginalis'' were placed within ''Bifidobacterium''. Comparative analysis of aligned protein sequences has led to the discovery of two conserved signature indels which are specific for the order ''Bifidobacteriales''. The first indel, a 1 amino acid deletion in ribosomal pr ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bifidobacteriales
The Bifidobacteriaceae are the only family of bacteria in the order '' Bifidobacteriales''. According to the 16S rRNA-based LTP release 106 published by 'The All-Species Living Tree' Project, the order Bifidobacteriales is a clade nested within the suborder Micrococcineae, also the genus ''Bifidobacterium'' is paraphyletic to the other genera within the family, i.e. the other genera are nested within ''Bifidobacterium''. Genomics In a phylogenetic tree for the order ''Bifidobacteriales'', based on RpoB, RpoC, and DNA Gyrase B, ''Gardnerella vaginalis'' branches between different ''Bifidobacterium'' species, which makes the genus ''Bifidobacterium'' polyphyletic. The genus could be made monophyletic if ''G. vaginalis'' were placed within ''Bifidobacterium''. Comparative analysis of aligned protein sequences has led to the discovery of two conserved signature indels which are specific for the order ''Bifidobacteriales''. The first indel, a 1 amino acid deletion in ribosomal pr ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gardnerella
''Gardnerella'' is a genus of Gram-variable-staining facultative anaerobic bacteria. Eponym It is named after Hermann L. Gardner (1912–1982), an American bacteriologist who discovered it in 1955. References Bifidobacteriales Bacteria genera {{actinobacteria-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gardnerella Vaginalis
''Gardnerella vaginalis'' is a species of Gram-variable-staining facultative anaerobic bacteria. The organisms are small (1.0–1.5 μm in diameter) non-spore-forming, nonmotile coccobacilli. Once classified as ''Haemophilus vaginalis'' and afterwards as ''Corynebacterium vaginalis'', ''G. vaginalis'' grows as small, circular, convex, gray colonies on chocolate agar; it also grows on agar. A selective medium for ''G. vaginalis'' is colistin-oxolinic acid blood agar. Clinical significance ''G. vaginalis'' is a facultatively anaerobic Gram-variable rod that is involved, together with many other bacteria, mostly anaerobic, in bacterial vaginosis in some women as a result of a disruption in the normal vaginal microflora. The resident facultative anaerobic ''Lactobacillus'' population in the vagina is responsible for the acidic environment. Once the anaerobes have supplanted the normal vaginal bacteria, prescription antibiotics with anaerobic coverage may have to be given to r ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bifidobacterium
''Bifidobacterium'' is a genus of gram-positive, nonmotile, often branched anaerobic bacteria. They are ubiquitous inhabitants of the gastrointestinal tract though strains have been isolated from the vagina and mouth ('' B. dentium'') of mammals, including humans. Bifidobacteria are one of the major genera of bacteria that make up the gastrointestinal tract microbiota in mammals. Some bifidobacteria are used as probiotics. Before the 1960s, ''Bifidobacterium'' species were collectively referred to as ''Lactobacillus bifidus''. History In 1899, Henri Tissier, a French pediatrician at the Pasteur Institute in Paris, isolated a bacterium characterised by a Y-shaped morphology ("bifid") in the intestinal microbiota of breast-fed infants and named it "bifidus". In 1907, Élie Metchnikoff, deputy director at the Pasteur Institute, propounded the theory that lactic acid bacteria are beneficial to human health. Metchnikoff observed that the longevity of Bulgarians was the result of t ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Scardovia
''Scardovia'' is a genus of bacteria in the family Bifidobacteriaceae The Bifidobacteriaceae are the only family of bacteria in the order ''Bifidobacteriales''. According to the 16S rRNA-based LTP release 106 published by 'The All-Species Living Tree' Project, the order Bifidobacteriales is a clade nested within th .... References Bacteria genera Bifidobacteriales {{Actinobacteria-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bifidobacterium Adolescentis
''Bifidobacterium'' is a genus of gram-positive, nonmotile, often branched anaerobic bacteria. They are ubiquitous inhabitants of the gastrointestinal tract though strains have been isolated from the vagina and mouth ('' B. dentium'') of mammals, including humans. Bifidobacteria are one of the major genera of bacteria that make up the gastrointestinal tract microbiota in mammals. Some bifidobacteria are used as probiotics. Before the 1960s, ''Bifidobacterium'' species were collectively referred to as ''Lactobacillus bifidus''. History In 1899, Henri Tissier, a French pediatrician at the Pasteur Institute in Paris, isolated a bacterium characterised by a Y-shaped morphology ("bifid") in the intestinal microbiota of breast-fed infants and named it "bifidus". In 1907, Élie Metchnikoff, deputy director at the Pasteur Institute, propounded the theory that lactic acid bacteria are beneficial to human health. Metchnikoff observed that the longevity of Bulgarians was the result of t ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Aeriscardovia
''Aeriscardovia aeriphila'' is a species of bacteria in the phylum Actinomycetota. Etymology The name ''Aeriscardovia'' derives from: Latin masculine gender noun ''aer'' ''aeris'', air; New Latin feminine gender noun ''Scardovia'', a bacterial generic name to honor Vittorio Scardovi, an Italian microbiologist; New Latin feminine gender noun ''Aeriscardovia'', cells similar to the genus ''Scardovia'' that can grow in air. The species epithet (''aeriphila'') drives from: Latin masculine gender noun ''aer'' ''aeris'', air; New Latin adjective ''philus'' from Greek adjective ''philos (φίλος)'' meaning friend, loving; New Latin feminine gender adjective ''aeriphila'', air-loving.) See also * Bacterial taxonomy * Microbiology Microbiology () is the scientific study of microorganisms, those being unicellular (single cell), multicellular (cell colony), or acellular (lacking cells). Microbiology encompasses numerous sub-disciplines including virology, bacteriology, prot ... ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Paraphyletic
In taxonomy (general), taxonomy, a group is paraphyletic if it consists of the group's most recent common ancestor, last common ancestor and most of its descendants, excluding a few Monophyly, monophyletic subgroups. The group is said to be paraphyletic ''with respect to'' the excluded subgroups. In contrast, a monophyletic group (a clade) includes a common ancestor and ''all'' of its descendants. The terms are commonly used in phylogenetics (a subfield of biology) and in the tree model of historical linguistics. Paraphyletic groups are identified by a combination of Synapomorphy and apomorphy, synapomorphies and symplesiomorphy, symplesiomorphies. If many subgroups are missing from the named group, it is said to be polyparaphyletic. The term was coined by Willi Hennig to apply to well-known taxa like Reptilia (reptiles) which, as commonly named and traditionally defined, is paraphyletic with respect to mammals and birds. Reptilia contains the last common ancestor of reptiles a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Amino Acid
Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although hundreds of amino acids exist in nature, by far the most important are the alpha-amino acids, which comprise proteins. Only 22 alpha amino acids appear in the genetic code. Amino acids can be classified according to the locations of the core structural functional groups, as Alpha and beta carbon, alpha- , beta- , gamma- or delta- amino acids; other categories relate to Chemical polarity, polarity, ionization, and side chain group type (aliphatic, Open-chain compound, acyclic, aromatic, containing hydroxyl or sulfur, etc.). In the form of proteins, amino acid '' residues'' form the second-largest component (water being the largest) of human muscles and other tissues. Beyond their role as residues in proteins, amino acids participate in a number of processes such as neurotransmitter transport and biosynthesis. It is thought that they played a key role in enabling life ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Indel
Indel is a molecular biology term for an insertion or deletion of bases in the genome of an organism. It is classified among small genetic variations, measuring from 1 to 10 000 base pairs in length, including insertion and deletion events that may be separated by many years, and may not be related to each other in any way. A microindel is defined as an indel that results in a net change of 1 to 50 nucleotides. In coding regions of the genome, unless the length of an indel is a multiple of 3, it will produce a frameshift mutation. For example, a common microindel which results in a frameshift causes Bloom syndrome in the Jewish or Japanese population. Indels can be contrasted with a point mutation. An indel inserts or deletes nucleotides from a sequence, while a point mutation is a form of substitution that ''replaces'' one of the nucleotides without changing the overall number in the DNA. Indels can also be contrasted with Tandem Base Mutations (TBM), which may result from fun ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Conserved Signature Indels
Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers that are generally of defined size and they are flanked on both sides by conserved regions to ensure their reliability. While indels can be arbitrary inserts or deletions, CSIs are defined as only those protein indels that are present within conserved regions of the protein. The CSIs that are restricted to a particular clade or group of species, generally provide good phylogenetic markers of common evolutionary descent. Due to the rarity and highly specific nature of such changes, it is less likely that they could arise independently by either convergent or parallel evolution (i.e. homoplasy) and therefore are likely to represent synapomorphy. Other confounding factors such as differences in evolutionary rates at different sites or among ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
