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BrainMaps
BrainMaps is an NIH-funded interactive zoomable high-resolution digital brain atlas and virtual microscope that is based on more than 140 million megapixels (140 terabytes) of scanned images of serial sections of both primate and non-primate brains and that is integrated with a high-speed database for querying and retrieving data about brain structure and function over the internet. Currently featured are complete brain atlas datasets for 16 species; a few of which are: ''Macaca mulatta'', '' Chlorocebus aethiops'', ''Felis silvestris catus'', ''Mus musculus'', ''Rattus norvegicus'', and ''Tyto alba''. The project's principal investigator was UC Davis neuroscientist Ted Jones from 2005 through 2011, after which the role was taken by W. Martin Usrey. Description BrainMaps uses multiresolution image formats for representing massive brain images, and a dHTML/Javascript front-end user interface for image navigation, both similar to the way that Google Maps works for geospatial da ...
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BrainMaps Treewidget
BrainMaps is an NIH-funded interactive zoomable high-resolution digital brain atlas and virtual microscope that is based on more than 140 million megapixels (140 terabytes) of scanned images of serial sections of both primate and non-primate brains and that is integrated with a high-speed database for querying and retrieving data about brain structure and function over the internet. Currently featured are complete brain atlas datasets for 16 species; a few of which are: ''Macaca mulatta'', ''Chlorocebus aethiops'', ''Felis silvestris catus'', ''Mus musculus'', ''Rattus norvegicus'', and ''Tyto alba''. The project's principal investigator was UC Davis neuroscientist Ted Jones from 2005 through 2011, after which the role was taken by W. Martin Usrey. Description BrainMaps uses multiresolution image formats for representing massive brain images, and a dHTML/Javascript front-end user interface for image navigation, both similar to the way that Google Maps works for geospatial dat ...
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Tyto Alba
The barn owl (''Tyto alba'') is the most widely distributed species of owl in the world and one of the most widespread of all species of birds, being found almost everywhere except for the polar and desert regions, Asia north of the Himalayas, most of Indonesia, and some Pacific Islands. It is also known as the common barn owl, to distinguish it from the other species in its family, Tytonidae, which forms one of the two main lineages of living owls, the other being the typical owls (''Strigidae''). There are at least three major lineages of barn owl: the western barn owl of Europe, western Asia, and Africa; the eastern barn owl of southeastern Asia and Australasia; and the American barn owl of the Americas. Some taxonomic authorities classify barn owls differently, recognising up to five separate species; and further research needs to be done to resolve the disparate taxonomies. There is considerable variation of size and colour among the approximately 28 subspecies, but mos ...
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Mouse Brain
The mouse brain refers to the brain of Mus musculus. Various brain atlases exist. For reasons of reproducibility, genetically characterized, stable strains like C57BL/6 were chosen to produce high-resolution images and databases. Well known online resources include: *Allen Brain Atlas * Mouse Brain LibraryHigh resolution mouse brain atlas*BrainMaps High-Resolution Brain Maps and Brain Atlases of ''Mus musculus'' Despite superficial differences, especially in size and weight, the mouse brain and its function can serve as a powerful animal model for study of human brain diseases or mental disorders (see e.g. Reeler, Chakragati mouse). This is because the genes responsible for building and operating both mouse and human brain are 90% identical. Transgenic mouse lines also allow neuroscientists to specifically target the labeling of certain cell types to probe the neural basis of fundamental processes. Anatomy The cerebral cortex of a mouse has around 8–14 million neurons while in ...
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Brain Atlas
A brain atlas is composed of serial sections along different anatomical planes of the healthy or diseased developing or adult animal or human brain where each relevant brain structure is assigned a number of coordinates to define its outline or volume. Brain atlases are contiguous, comprehensive results of visual brain mapping and may include anatomical, genetic or functional features. A functional brain atlas is made up of N regions of interest, where these regions are typically defined as spatially contiguous and functionally coherent patches of gray matter. In most atlases, the three dimensions are: latero-lateral (x), dorso-ventral (y) and rostro- caudal (z). The possible sections are * coronal * sagittal * transverse Surface maps are sometimes used in addition to the 3D serial section maps Besides the human brain, brain atlases exist for the brains of the mouse, rhesus macaques, ''Drosophila'', pig and others. Notable examples include the Allen Brain Atlas, BrainMaps, Bi ...
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List Of Neuroscience Databases
A number of online neuroscience databases are available which provide information regarding gene expression, neurons, macroscopic brain structure, and neurological or psychiatric disorders. Some databases contain descriptive and numerical data, some to brain function, others offer access to 'raw' imaging data, such as postmortem brain sections or 3D MRI and fMRI images. Some focus on the human brain, others on non-human. As the number of databases that seek to disseminate information about the structure, development and function of the brain has grown, so has the need to collate these resources themselves. As a result, there now exist databases of neuroscience databases, some of which reach over 3000 entries. __TOC__ Neuroscience databases Databases of neuroscience databases Neuroscience article aggregators Neuroscience feed at RightRelevance. See also *Neuroinformatics *Budapest Reference Connectome The Budapest Reference Connectome server computes the frequentl ...
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Ted Jones (neuroscientist)
Edward (Ted) G. Jones (March 26, 1939, Upper Hutt, New Zealand – June 6, 2011, Davis, California) was an American neuroscientist and a prolific neuroanatomist. One of his main contributions involves his Matrix-Core theory of thalamic organization. He authored a highly influential book entitled ''The Thalamus'' in 1985. Jones resided in California and served as director for the Center for Neuroscience at the University of California, Davis. He was a former president of the Society for Neuroscience The Society for Neuroscience (SfN) is a professional society, headquartered in Washington, DC, for basic scientists and physicians around the world whose research is focused on the study of the brain and nervous system. It is especially well kn .... External links UC Davis Center for NeuroscienceUC Davis Center for Neuroscience Memorial PagePersonal Homepage at Center for Neuroscience, UC DavisBrainMaps.org, a high-resolution interactive brain atlas American neuroscientists ...
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Online Databases
An online database is a database accessible from a local network or the Internet, as opposed to one that is stored locally on an individual computer or its attached storage (such as a CD). Online databases are hosted on websites, made available as software as a service products accessible via a web browser. They may be free or require payment, such as by a monthly subscription. Some have enhanced features such as collaborative editing and email notification. Cloud database A cloud database is a database that is run on and accessed via the Internet, rather than locally. So, rather than keep a customer information database at one location, a business may choose to have it hosted on the Internet so that all its departments or divisions can access and update it. Most database services offer web-based consoles, which the end user can use to provision and configure database instances. See also * List of online databases ** Bibliographic databases * Customer relationship management * List ...
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NeuroNames
''NeuroNames'' is an integrated nomenclature for structures in the brain and spinal cord of the four species most studied by neuroscientists: human, macaque, rat and mouse. It offers a standard, controlled vocabulary of common names for structures, which is suitable for unambiguous neuroanatomical indexing of information in digital databases. Terms in the standard vocabulary have been selected for ease of pronunciation, mnemonic value, and frequency of use in recent neuroscientific publications. Structures and their relations to each other are defined in terms of the standard vocabulary. Currently NeuroNames contains standard names, synonyms and definitions of some 2,500 neuroanatomical entities. The nomenclature is maintained by the University of Washington and is the core component of a tool called "BrainInfo". BrainInfo helps one identify structures in the brain. One can either search by a structure name or locate the structure in a brain atlas and get information such as it ...
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Human Brain Project
The Human Brain Project (HBP) is a large ten-year scientific research project, based on exascale supercomputers, that aims to build a collaborative ICT-based scientific research infrastructure to allow researchers across Europe to advance knowledge in the fields of neuroscience, computing, and brain-related medicine. The Project, which started on 1 October 2013, is a European Commission Future and Emerging Technologies Flagship. The HBP is coordinated by the École Polytechnique Fédérale de Lausanne and is largely funded by the European Union. The project coordination office is in Geneva, Switzerland. Peer-reviewed research finds that the public discussion forum (HBP forum) has been actively utilized and showed resilience during the Covid-19 pandemic. The HBP forum has been most actively utilized and useful for solving questions related to programming issues and close to HBP core areas. Strategic goals and organisation Fundamental to the HBP approach is to investigate th ...
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OpenGL
OpenGL (Open Graphics Library) is a cross-language, cross-platform application programming interface (API) for rendering 2D and 3D vector graphics. The API is typically used to interact with a graphics processing unit (GPU), to achieve hardware-accelerated rendering. Silicon Graphics, Inc. (SGI) began developing OpenGL in 1991 and released it on June 30, 1992; applications use it extensively in the fields of computer-aided design (CAD), virtual reality, scientific visualization, information visualization, flight simulation, and video games. Since 2006, OpenGL has been managed by the non-profit technology consortium Khronos Group. Design The OpenGL specification describes an abstract API for drawing 2D and 3D graphics. Although it is possible for the API to be implemented entirely in software, it is designed to be implemented mostly or entirely in hardware. The API is defined as a set of functions which may be called by the client program, alongside a set of named intege ...
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Google Maps
Google Maps is a web mapping platform and consumer application offered by Google. It offers satellite imagery, aerial photography, street maps, 360° interactive panoramic views of streets ( Street View), real-time traffic conditions, and route planning for traveling by foot, car, bike, air (in beta) and public transportation. , Google Maps was being used by over 1 billion people every month around the world. Google Maps began as a C++ desktop program developed by brothers Lars and Jens Rasmussen at Where 2 Technologies. In October 2004, the company was acquired by Google, which converted it into a web application. After additional acquisitions of a geospatial data visualization company and a real-time traffic analyzer, Google Maps was launched in February 2005. The service's front end utilizes JavaScript, XML, and Ajax. Google Maps offers an API that allows maps to be embedded on third-party websites, and offers a locator for businesses and other organizations in numero ...
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UC Davis
The University of California, Davis (UC Davis, UCD, or Davis) is a public land-grant research university near Davis, California. Named a Public Ivy, it is the northernmost of the ten campuses of the University of California system. The institution was first founded as an agricultural branch of the system in 1905 and became the seventh campus of the University of California in 1959. The university is classified among "R1: Doctoral Universities – Very high research activity". The UC Davis faculty includes 23 members of the National Academy of Sciences, 30 members of the American Academy of Arts and Sciences, 17 members of the American Law Institute, 14 members of the Institute of Medicine, and 14 members of the National Academy of Engineering. Among other honors that university faculty, alumni, and researchers have won are two Nobel Prizes, one Fields Medal, a Presidential Medal of Freedom, three Pulitzer Prizes, three MacArthur Fellowships, and a National Medal of Science. Fo ...
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