Bolivar Rice Rat
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Bolivar Rice Rat
''Transandinomys bolivaris'', also known as the long-whiskered rice rat, is a rodent in the family Cricetidae. It is found in humid forest from northeastern Honduras to western Ecuador, up to above sea level. Since it was first described in 1901 from Ecuador, six scientific names have been introduced for it, but their common identity was not documented until 1998 and the species has long been known under the name ''Oryzomys bombycinus'', described from Panama in 1912. The name ''Oryzomys bolivaris'' was used before it was moved to the new genus ''Transandinomys'' with ''Transandinomys talamancae'' (formerly ''Oryzomys talamancae'') in 2006. It is a medium-sized rice rat distinguished by its very long vibrissae (whiskers)—those above the eyes are up to long. The fur, which is soft and dense, is usually dark brown above and light gray below; it is darker in juveniles. The feet are long and the tail is about as long as the head and body. The skull is narrow and has a broad inte ...
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Joel Asaph Allen
Joel Asaph Allen (July 19, 1838 – August 29, 1921) was an American zoology, zoologist, mammalogy, mammalogist, and ornithology, ornithologist. He became the first president of the American Ornithologists' Union, the first curator of birds and mammals at the American Museum of Natural History, and the first head of that museum's Department of Ornithology. He is remembered for Allen's rule, which states that the bodies of endotherms (warm-blooded animals) vary in shape with climate, having increased surface area in hot climates to lose heat, and minimized surface area in cold climates, to conserve heat. Early life Allen was born in Springfield, Massachusetts, the son of Joel Allen and Harriet Trumbull. He studied and collected specimen of natural history early in life, but he was forced to sell his relatively large collection so that he could attend the Wilbraham & Monson Academy in 1861. The following year, he transferred to Harvard University, where he studied under Louis Agassi ...
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Synonym (taxonomy)
The Botanical and Zoological Codes of nomenclature treat the concept of synonymy differently. * In botanical nomenclature, a synonym is a scientific name that applies to a taxon that (now) goes by a different scientific name. For example, Linnaeus was the first to give a scientific name (under the currently used system of scientific nomenclature) to the Norway spruce, which he called ''Pinus abies''. This name is no longer in use, so it is now a synonym of the current scientific name, ''Picea abies''. * In zoology, moving a species from one genus to another results in a different binomen, but the name is considered an alternative combination rather than a synonym. The concept of synonymy in zoology is reserved for two names at the same rank that refers to a taxon at that rank - for example, the name ''Papilio prorsa'' Linnaeus, 1758 is a junior synonym of ''Papilio levana'' Linnaeus, 1758, being names for different seasonal forms of the species now referred to as ''Araschnia le ...
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DNA Sequence
DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is used to determine the order of the four bases: adenine, guanine, cytosine, and thymine. The advent of rapid DNA sequencing methods has greatly accelerated biological and medical research and discovery. Knowledge of DNA sequences has become indispensable for basic biological research, DNA Genographic Projects and in numerous applied fields such as medical diagnosis, biotechnology, forensic biology, virology and biological systematics. Comparing healthy and mutated DNA sequences can diagnose different diseases including various cancers, characterize antibody repertoire, and can be used to guide patient treatment. Having a quick way to sequence DNA allows for faster and more individualized medical care to be administered, and for more organisms to be identified and cataloged. The rapid speed of sequencing attained with modern D ...
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Morphology (anatomy)
Morphology is a branch of biology dealing with the study of the form and structure of organisms and their specific structural features. This includes aspects of the outward appearance (shape, structure, colour, pattern, size), i.e. external morphology (or eidonomy), as well as the form and structure of the internal parts like bones and organs, i.e. internal morphology (or anatomy). This is in contrast to physiology, which deals primarily with function. Morphology is a branch of life science dealing with the study of gross structure of an organism or taxon and its component parts. History The etymology of the word "morphology" is from the Ancient Greek (), meaning "form", and (), meaning "word, study, research". While the concept of form in biology, opposed to function, dates back to Aristotle (see Aristotle's biology), the field of morphology was developed by Johann Wolfgang von Goethe (1790) and independently by the German anatomist and physiologist Karl Friedrich Burdach ...
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Tribe (taxonomy)
In biology, a tribe is a taxonomic rank above genus, but below family and subfamily. It is sometimes subdivided into subtribes. By convention, all taxonomic ranks from genus upwards are capitalized, including both tribe and subtribe. In zoology, the standard ending for the name of a zoological tribe is "-ini". Examples include the tribes Caprini (goat-antelopes), Hominini (hominins), Bombini (bumblebees), and Thunnini (tunas). The tribe Hominini is divided into subtribes by some scientists; subtribe Hominina then comprises "humans". The standard ending for the name of a zoological subtribe is "-ina". In botany, the standard ending for the name of a botanical tribe is "-eae". Examples include the tribes Acalypheae and Hyacintheae. The tribe Hyacintheae is divided into subtribes, including the subtribe Massoniinae. The standard ending for the name of a botanical subtribe is "-inae". In bacteriology, the form of tribe names is as in botany, e.g., Pseudomonadeae, based on the genu ...
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Phylogenetics
In biology, phylogenetics (; from Greek language, Greek wikt:φυλή, φυλή/wikt:φῦλον, φῦλον [] "tribe, clan, race", and wikt:γενετικός, γενετικός [] "origin, source, birth") is the study of the evolutionary history and relationships among or within groups of organisms. These relationships are determined by Computational phylogenetics, phylogenetic inference methods that focus on observed heritable traits, such as DNA sequences, Protein, protein Amino acid, amino acid sequences, or Morphology (biology), morphology. The result of such an analysis is a phylogenetic tree—a diagram containing a hypothesis of relationships that reflects the evolutionary history of a group of organisms. The tips of a phylogenetic tree can be living taxa or fossils, and represent the "end" or the present time in an evolutionary lineage. A phylogenetic diagram can be rooted or unrooted. A rooted tree diagram indicates the hypothetical common ancestor of the tree. An un ...
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Phylogeny
A phylogenetic tree (also phylogeny or evolutionary tree Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, MA.) is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon similarities and differences in their physical or genetic characteristics. All life on Earth is part of a single phylogenetic tree, indicating common ancestry. In a ''rooted'' phylogenetic tree, each node with descendants represents the inferred most recent common ancestor of those descendants, and the edge lengths in some trees may be interpreted as time estimates. Each node is called a taxonomic unit. Internal nodes are generally called hypothetical taxonomic units, as they cannot be directly observed. Trees are useful in fields of biology such as bioinformatics, systematics, and phylogenetics. ''Unrooted'' trees illustrate only the relatedness of the leaf nodes and do not require the ancestral root to be ...
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Mammal Species Of The World
''Mammal Species of the World: A Taxonomic and Geographic Reference'' is a standard reference work in mammalogy giving descriptions and bibliographic data for the known species of mammals. It is now in its third edition, published in late 2005, which was edited by Don E. Wilson and DeeAnn M. Reeder. An online version is hosted by Bucknell University, from which the names of the species can be downloaded as a custom dictionary. A partial online version is available at Google Books (see "External links" below). The Checklist Committee is charged with compiling and updating MSW. In its Annual Report for 2015, the Committee noted that it is under contract with Johns Hopkins Press The Johns Hopkins University Press (also referred to as JHU Press or JHUP) is the publishing division of Johns Hopkins University. It was founded in 1878 and is the oldest continuously running university press in the United States. The press publi ... for the 4th edition of MSW, which will be edited by D ...
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Holotype
A holotype is a single physical example (or illustration) of an organism, known to have been used when the species (or lower-ranked taxon) was formally described. It is either the single such physical example (or illustration) or one of several examples, but explicitly designated as the holotype. Under the International Code of Zoological Nomenclature (ICZN), a holotype is one of several kinds of name-bearing types. In the International Code of Nomenclature for algae, fungi, and plants (ICN) and ICZN, the definitions of types are similar in intent but not identical in terminology or underlying concept. For example, the holotype for the butterfly '' Plebejus idas longinus'' is a preserved specimen of that subspecies, held by the Museum of Comparative Zoology at Harvard University. In botany, an isotype is a duplicate of the holotype, where holotype and isotypes are often pieces from the same individual plant or samples from the same gathering. A holotype is not necessarily "typ ...
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Guy Musser
Guy Graham Musser (August 10, 1936 – October 2019) was an American zoologist. His main research was in the field of the rodent subfamily Murinae, in which he has described many new species. Musser was born in Salt Lake City, Utah. He attended elementary and secondary public schools until 1955 and in 1967 obtained a PhD at the University of Michigan with a thesis about the taxonomy of the Mexican gray squirrel (''Sciurus aureogaster''). In 1966 he joined the American Museum of Natural History where he became curator of mammals. Since his retirement in 2002 he is curator emeritus. In the 1960s and 1970s he published numerous articles on squirrels, Neotominae and Murinae. In the 1970s he conducted a three-year expedition to the Indonesian island of Sulawesi where he discovered several new mice and rat species. The results of this expedition are still not fully published. In the early 1980s he published some of his most important works including ''Notes on systematics of Indo-Mal ...
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Hylaeamys Megacephalus
''Hylaeamys megacephalus'', also known as Azara's broad-headed oryzomys or the large-headed rice rat, is a species of rodent in the genus ''Hylaeamys'' of family Cricetidae, of which it is the type species. It is found mainly in lowland tropical rainforest from its type locality in Paraguay north through central Brazil, French Guiana, Guyana, Suriname, and Venezuela onto Trinidad and Tobago. To its west and east, other closely related species of ''Hylaeamys'' are found: '' H. perenensis'' in western Amazonia, '' H. acritus'' in Bolivia, and '' H. laticeps'' and '' H. oniscus'' in the Atlantic Forest of eastern Brazil. Taxonomy It was first described by Spanish naturalist Félix de Azara. Based on his description, several names were given to the animal, including ''Mus megacephalus'' Fischer, 1814 and ''Mus capito'' Olfers, 1818, both of which were largely forgotten for over a century. When ''capito'' was rediscovered in 1960, it came in use (as ''Oryzomys capito'') for a "sp ...
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Euryoryzomys Nitidus
''Euryoryzomys nitidus'', also known as the elegant oryzomys or elegant rice rat, is a rodent species in the family Cricetidae. Previously it was known as ''Oryzomys nitidus'', but it is not closely related to ''Oryzomys'' as that genus is now constructed. Its range includes Bolivia, Brazil and Peru to the east of the Andes, in lowland tropical rainforest as well as forest in the eastern foothills of the mountains, at elevations from . Description ''Euryoryzomys nitidus'' is a medium-sized rice rat with a head-and-body length of about and a similar length tail. The short dense fur on the head and back is tawny or tawny-brown, the sides of the head and flanks being tinged with ochre. The underparts are whitish-grey. The tail is a uniform colour apart from the underside near the tip which is mottled. The upper surfaces of both fore- and hind-feet are clad in white hair, and the nails are hidden by tufts of hair growing between them. Distribution and habitat The main population of ...
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