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Annwoodia
The genus ''Annwoodia'' was named in 2017 to circumscribe an organism previously described as a member of the genus ''Thiobacillus'', ''Thiobacillus aquaesulis'' - the type and only species is ''Annwoodia aquaesulis'', which was isolated from the geothermal waters of the Roman Baths in the city of Bath in the United Kingdom by Ann P. Wood and Donovan P. Kelly of the University of Warwick - the genus was subsequently named to honour Wood's contribution to microbiology. The genus falls within the family '' Thiobacillaceae'' along with ''Thiobacillus'' and '' Sulfuritortus'', both of which comprise autotrophic organisms dependent on thiosulfate, other sulfur oxyanions and sulfide as electron donors for chemolithoheterotrophic growth. Whilst ''Annwoodia'' spp. and '' Sulfuritortus'' spp. are thermophilic, ''Thiobacillus'' spp. are mesophilic. ''A. aquaesulis'' is moderately thermophilic with an optimum temperature of 43 °C and a temperature range of 30 °C to 55 °C ...
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Annwoodia Aquaesulis
The genus ''Annwoodia'' was named in 2017 to circumscribe an organism previously described as a member of the genus ''Thiobacillus'', ''Thiobacillus aquaesulis'' - the type and only species is ''Annwoodia aquaesulis'', which was isolated from the geothermal waters of the Roman Baths in the city of Bath in the United Kingdom by Ann P. Wood and Donovan P. Kelly of the University of Warwick - the genus was subsequently named to honour Wood's contribution to microbiology. The genus falls within the family '' Thiobacillaceae'' along with ''Thiobacillus'' and '' Sulfuritortus'', both of which comprise autotrophic organisms dependent on thiosulfate, other sulfur oxyanions and sulfide as electron donors for chemolithoheterotrophic growth. Whilst ''Annwoodia'' spp. and '' Sulfuritortus'' spp. are thermophilic, ''Thiobacillus'' spp. are mesophilic. ''A. aquaesulis'' is moderately thermophilic with an optimum temperature of 43 °C and a temperature range of 30 °C to 55 °C ...
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Thiobacillus
''Thiobacillus'' is a genus of Gram-negative Betaproteobacteria. '' Thiobacillus thioparus'' is the type species of the genus, and the type strain thereof is the StarkeyT strain, isolated by Robert Starkey in the 1930s from a field at Rutgers University in the United States of America. While over 30 "species" have been named in this genus since it was defined by Martinus Beijerinck in 1904, (the first strain was observed by the biological oceanographer Alexander Nathansohn in 1902 - likely what we would now call ''Halothiobacillus neapolitanus''), most names were never validly or effectively published. The remainder were either reclassified into ''Paracoccus'', '' Starkeya'' (both in the Alphaproteobacteria); '' Sulfuriferula'', ''Annwoodia'', ''Thiomonas'' (in the Betaproteobacteria); ''Halothiobacillus'', ''Guyparkeria'' (in the Gammaproteobacteria), or ''Thermithiobacillus'' or ''Acidithiobacillus'' (in the Acidithiobacillia). The very loosely defined "species" '' Thiobacillu ...
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Nitrosomonadales
The NitrosomonadalesBoden, R; Hutt, LP, Rae AW (2017) Reclassification of ''Thiobacillus aquaesulis'' (Wood & Kelly, 1995) as ''Annwoodia aquaesulis'' gen. nov., comb. nov., transfer of ''Thiobacillus'' (Beijerinck, 1904) from the ''Hydrogenophilales'' to the ''Nitrosomonadales'', proposal of ''Hydrogenophilalia'' class. nov. within the 'Proteobacteria', and four new families within the orders ''Nitrosomonadales'' and ''Rhodocyclales''. Int J Syst Evol Microbiol 67: 1191-1205 are an order of the class ''Betaproteobacteria'' in the phylum "'' Pseudomonadota''".Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.) (2005). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. . Like all members of their class, they are Gram-negative. The order is divided into six families: '' Nitrosomonadaceae'' (type family) comprises the genera ''Nitrosomonas'' (t ...
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Betaproteobacteria
Betaproteobacteria are a class of Gram-negative bacteria, and one of the eight classes of the phylum Pseudomonadota (synonym Proteobacteria). The ''Betaproteobacteria'' are a class comprising over 75 genera and 400 species of bacteria. Together, the ''Betaproteobacteria'' represent a broad variety of metabolic strategies and occupy diverse environments from obligate pathogens living within host organisms to oligotrophic groundwater ecosystems. Whilst most members of the ''Betaproteobacteria'' are heterotrophic, deriving both their carbon and electrons from organocarbon sources, some are photoheterotrophic, deriving energy from light and carbon from organocarbon sources. Other genera are autotrophic, deriving their carbon from bicarbonate or carbon dioxide and their electrons from reduced inorganic ions such as nitrite, ammonium, thiosulfate or sulfide — many of these chemolithoautotrophic. ''Betaproteobacteria'' are economically important, with roles in maintaining soil p ...
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Pseudomonadota
Pseudomonadota (synonym Proteobacteria) is a major phylum of Gram-negative bacteria. The renaming of phyla in 2021 remains controversial among microbiologists, many of whom continue to use the earlier names of long standing in the literature. The phylum Proteobacteria includes a wide variety of pathogenic genera, such as ''Escherichia'', '' Salmonella'', ''Vibrio'', ''Yersinia'', ''Legionella'', and many others.Slonczewski JL, Foster JW, Foster E. Microbiology: An Evolving Science 5th Ed. WW Norton & Company; 2020. Others are free-living (nonparasitic) and include many of the bacteria responsible for nitrogen fixation. Carl Woese established this grouping in 1987, calling it informally the "purple bacteria and their relatives". Because of the great diversity of forms found in this group, it was later informally named Proteobacteria, after Proteus, a Greek god of the sea capable of assuming many different shapes (not after the Proteobacteria genus ''Proteus''). In 2021 the Internat ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationsh ...
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Bicarbonate
In inorganic chemistry, bicarbonate (IUPAC-recommended nomenclature: hydrogencarbonate) is an intermediate form in the deprotonation of carbonic acid. It is a polyatomic anion with the chemical formula . Bicarbonate serves a crucial biochemical role in the physiological pH buffering system. The term "bicarbonate" was coined in 1814 by the English chemist William Hyde Wollaston. The name lives on as a trivial name. Chemical properties The bicarbonate ion (hydrogencarbonate ion) is an anion with the empirical formula and a molecular mass of 61.01  daltons; it consists of one central carbon atom surrounded by three oxygen atoms in a trigonal planar arrangement, with a hydrogen atom attached to one of the oxygens. It is isoelectronic with nitric acid . The bicarbonate ion carries a negative one formal charge and is an amphiprotic species which has both acidic and basic properties. It is both the conjugate base of carbonic acid ; and the conjugate acid of , ...
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Chemolithoautotroph
A lithoautotroph is an organism which derives energy from reactions of reduced compounds of mineral (inorganic) origin. Two types of lithoautotrophs are distinguished by their energy source; photolithoautotrophs derive their energy from light while chemolithoautotrophs (chemolithotrophs or chemoautotrophs) derive their energy from chemical reactions. Chemolithoautotrophs are exclusively microbes. Photolithoautotrophs include macroflora such as plants; these do not possess the ability to use mineral sources of reduced compounds for energy. Most chemolithoautotrophs belong to the domain Bacteria, while some belong to the domain Archaea. Lithoautotrophic bacteria can only use inorganic molecules as substrates in their energy-releasing reactions. The term "lithotroph" is from Greek ''lithos'' (''λίθος'') meaning "rock" and ''trōphos'' (τροφοσ) meaning "consumer"; literally, it may be read "eaters of rock". The "lithotroph" part of the name refers to the fact that these org ...
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Electron Donor
In chemistry, an electron donor is a chemical entity that donates electrons to another compound. It is a reducing agent that, by virtue of its donating electrons, is itself oxidized in the process. Typical reducing agents undergo permanent chemical alteration through covalent or ionic reaction chemistry. This results in the complete and irreversible transfer of one or more electrons. In many chemical circumstances, however, the transfer of electronic charge to an electron acceptor may be only fractional, meaning an electron is not completely transferred, but results in an electron resonance between the donor and acceptor. This leads to the formation of charge transfer complexes in which the components largely retain their chemical identities. The electron donating power of a donor molecule is measured by its ionization potential which is the energy required to remove an electron from the highest occupied molecular orbital (HOMO). The overall energy balance (ΔE), i.e., energ ...
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Carbon Dioxide
Carbon dioxide (chemical formula ) is a chemical compound made up of molecules that each have one carbon atom covalently double bonded to two oxygen atoms. It is found in the gas state at room temperature. In the air, carbon dioxide is transparent to visible light but absorbs infrared radiation, acting as a greenhouse gas. It is a trace gas in Earth's atmosphere at 421 parts per million (ppm), or about 0.04% by volume (as of May 2022), having risen from pre-industrial levels of 280 ppm. Burning fossil fuels is the primary cause of these increased CO2 concentrations and also the primary cause of climate change.IPCC (2022Summary for policy makersiClimate Change 2022: Mitigation of Climate Change. Contribution of Working Group III to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA Carbon dioxide is soluble in water and is found in groundwater, lakes, ice caps, ...
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Chemostat
A chemostat (from ''chem''ical environment is ''stat''ic) is a bioreactor to which fresh medium is continuously added, while culture liquid containing left over nutrients, metabolic end products and microorganisms is continuously removed at the same rate to keep the culture volume constant. By changing the rate with which medium is added to the bioreactor the specific growth rate of the microorganism can be easily controlled within limits. Operation Steady state One of the most important features of chemostats is that microorganisms can be grown in a physiological steady state under constant environmental conditions. In this steady state, growth occurs at a constant specific growth rate and all culture parameters remain constant (culture volume, dissolved oxygen concentration, nutrient and product concentrations, pH, cell density, etc.). In addition, environmental conditions can be controlled by the experimenter. Microorganisms growing in chemostats usually reach a steady stat ...
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Tetrathionate
The tetrathionate anion, , is a sulfur oxoanion derived from the compound tetrathionic acid, H2S4O6. Two of the sulfur atoms present in the ion are in oxidation state 0 and two are in oxidation state +5. Alternatively, the compound can be viewed as the adduct resulting from the binding of to SO3. Tetrathionate is one of the polythionates, a family of anions with the formula ''n''(SO3)2sup>2−. Its IUPAC name is ''2-(dithioperoxy)disulfate'', and the name of its corresponding acid is ''2-(dithioperoxy)disulfuric acid''. The Chemical Abstracts Service identifies tetrathionate by the CAS Number 15536-54-6. Formation Tetrathionate is a product of the oxidation of thiosulfate, , by iodine, I2: :2 + I2 → + 2 I− Structure Tetrathionate's structure can be visualized by following three edges of a rectangular cuboid, as in the diagram below. The structure shown is the configuration of in BaS4O6·2H2O and Na2S4O6·2H2O. Dihedral S–S–S–S angles approaching 90° are comm ...
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